Rorug04G0458700

Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016799
Physical Location & Seq
Reverse (-)
61141800 .. 61142207
408 bp
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UTR
Exon/CDS
Intron
Rorug04G0458700.1

Sequence Viewer

Length: 408 bp
ATGGGGATGTTTCGCAATGCTTGGAGGATTAATGGAGCATTGCAGGTGGAGGAAGTAGAGGAGCAAAGGGTGCTCTTCATGCTGTCGGACCTTGCTGATAGGGTTCAGATCTGGCGAGGTGCGCCATGGGGTTATAACCATGCTCCGGTGGCGTTGGCTTGGTATGATGGCATCATGCCGGTTGAAAAAGTTCCCTTGACTACGACATCGTATTGGATTACCCTGATCCCGCCGGCGTTCCGGTCTGAACGAGTCATGACTATGATAGGATACACATTAGGGGACTTCCAGGAGATCGATAAAAATGGCAAGAAGGTCGGGAAGCTCTGGATTAGGGTTGAAATTCCGCTTAACAAGCCTTTGCCATTCAAGCGATGGTATTTGGTGGAGGATGAGGTTGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHO4

Protein Analysis

135

Amino Acids

15.83

Weight (kDa)

5.86

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 4 - 56 2.7e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016799)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g27970
malus_domestica MD00G1008800.v1.1 MD10G1275200.v1.1
prunus_persica Prupe.4G067200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011761
rosa_laevigata RLG00000031860
rosa_roxburghii Rroxscaffold_1G00064790
rosa_rugosa Rorug04G0458700 Rorug04G0458800
rosa_samantha Rh5AG090500 Rh5BG086000 Rh5CG099800 Rh5DG086200
rosa_wichuraiana Rw5G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AarI CACCTGC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 34
AciI CCGC 2 cut(s) 230, 347
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 3 cut(s) 185, 341, 370
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 342
AseI ATTAAT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 88
AvaII GGWCC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 2 cut(s) 161, 369
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 290
BciVI GTATCC 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 34
BfuI GTATCC 1 cut(s) 263
BglII AGATCT 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 2 cut(s) 145, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 2 cut(s) 178, 232
Bse3DI GCAATG 2 cut(s) 22, 38
BseBI CCWGG 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 12, 397
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 2 cut(s) 22, 38
BseRI GAGGAG 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 4 cut(s) 146, 179, 233, 241
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 3 cut(s) 108, 225, 294
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 2 cut(s) 230, 347
BspDI ATCGAT 1 cut(s) 297
BspHI TCATGA 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 22, 38
BsrFI RCCGGY 2 cut(s) 178, 232
BssAI RCCGGY 2 cut(s) 178, 232
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 3 cut(s) 108, 225, 294
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 12, 397
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 3 cut(s) 111, 228, 297
BstMBI GATC 3 cut(s) 108, 225, 294
BstMWI GCNNNNNNNGC 6 cut(s) 70, 79, 121, 149, 355, 370
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 263
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 12, 397
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 234
CciI TCATGA 1 cut(s) 255
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 2 cut(s) 178, 232
Cfr13I GGNCC 1 cut(s) 88
ClaI ATCGAT 1 cut(s) 297
CviAII CATG 5 cut(s) 79, 126, 140, 175, 256
CviJI RGCY 3 cut(s) 158, 325, 358
CviKI_1 RGCY 3 cut(s) 158, 325, 358
DpnI GATC 3 cut(s) 110, 227, 296
DpnII GATC 3 cut(s) 108, 225, 294
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 5 cut(s) 82, 129, 143, 178, 259
FaiI YATR 8 cut(s) 80, 127, 135, 141, 165, 176, 257, 263
FaqI GGGAC 1 cut(s) 296
FatI CATG 5 cut(s) 78, 125, 139, 174, 255
FauI CCCGC 1 cut(s) 237
FokI GGATG 2 cut(s) 19, 404
GlaI GCGC 1 cut(s) 123
HapII CCGG 4 cut(s) 146, 179, 233, 241
HhaI GCGC 1 cut(s) 124
Hin1II CATG 5 cut(s) 82, 129, 143, 178, 259
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 1 cut(s) 252
HpaII CCGG 4 cut(s) 146, 179, 233, 241
Hpy188I TCNGA 3 cut(s) 88, 108, 247
Hpy188III TCNNGA 3 cut(s) 256, 319, 328
HpyAV CCTTC 1 cut(s) 307
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 79, 121, 149, 355, 370
Hsp92II CATG 5 cut(s) 82, 129, 143, 178, 259
HspAI GCGC 1 cut(s) 122
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 108, 225, 294
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 3 cut(s) 35, 61, 148
LweI GCATC 1 cut(s) 180
MalI GATC 3 cut(s) 110, 227, 296
MboI GATC 3 cut(s) 108, 225, 294
MboII GAAGA 1 cut(s) 67
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 342
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 6 cut(s) 18, 43, 52, 110, 382, 388
MreI CGCCGGCG 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 30, 351
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 4 cut(s) 146, 179, 233, 241
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 6 cut(s) 70, 79, 121, 149, 355, 370
NaeI GCCGGC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 125
NdeII GATC 3 cut(s) 108, 225, 294
NgoMIV GCCGGC 1 cut(s) 232
NlaIII CATG 5 cut(s) 82, 129, 143, 178, 259
PagI TCATGA 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 80
PdiI GCCGGC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 288
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 30
PsiI TTATAA 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 30, 351
Sau3AI GATC 3 cut(s) 108, 225, 294
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 75
SetI ASST 6 cut(s) 48, 93, 121, 318, 327, 399
SfaNI GCATC 1 cut(s) 180
SgrAI CRCCGGYG 1 cut(s) 232
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 1 cut(s) 342
SsiI CCGC 2 cut(s) 230, 347
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 125
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 342
Tru1I TTAA 2 cut(s) 30, 351
Tru9I TTAA 2 cut(s) 30, 351
TspDTI ATGAA 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 88
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.