FvH4_3g29520

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015580
Physical Location & Seq
Reverse (-)
22568972 .. 22569745
774 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29520.t1

Sequence Viewer

Length: 459 bp
ATGGCTCAAATTGCAAAGGCTGAGGGTCAAGCAGAGATAAAATCGTCAGCGGACAAGTTCTATGGCTTTTTTAAGAACAACATGAGCTCTTTTGTTCAGATGTTCCCTCAAATACTTAAGAGCTTTGAAGTTGTAGGGGGAGGTGAGATCAGAACTGGCTCAGTGACAAAATGGGCATTCAACATTGGTAGGGGCGTGGAAACAGCAAAACTTAAAATCCAAGAAGCAGATGATGAAAACACTTCAATCTCGTTCATTGGACTTGAAGGAGATATTTTGAAGGATTATAAGAGTTTCAAGGAGAAACTCCAAGTTGTTAGAGCAGCTAATGGCGGGAGCATAGTGAAATGGACATTTGAGTGTGAGAAGGCGGATGCGAATGCACCTGATGCAAAACCCTATGCGGACCTTTCAGTTCAAGTTTCCAAGGCCATTGATGCTTACCTTTGCAGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

153

Amino Acids

16.68

Weight (kDa)

6.34

Isoelectric Point (pI)

25.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 8 - 150 1e-30 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015580)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29520 FvH4_3g29530 FvH4_3g29540
malus_domestica MD11G1160200.v1.1
rosa_chinensis RchiOBHm_Chr5g0054611
rosa_laevigata RLG00000034935 RLG00000034939
rosa_multiflora Rmu_sc0019242.1_g000001
rosa_roxburghii Rroxscaffold_1G00026350
rosa_rugosa Rorug05G0287000
rosa_samantha Rh5AG357400 Rh5BG369400 Rh5BG369500 Rh5CG392100
rosa_wichuraiana Rw5G033560 Rw5G033770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AciI CCGC 4 cut(s) 50, 333, 371, 404
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 7 cut(s) 128, 181, 246, 266, 280, 298, 419
AluBI AGCT 3 cut(s) 87, 123, 326
AluI AGCT 3 cut(s) 87, 123, 326
Alw21I GWGCWC 1 cut(s) 89
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 89
BbvCI CCTCAGC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 116
BglII AGATCT 1 cut(s) 452
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmsI GCATC 3 cut(s) 364, 379, 427
Bpu10I CCTNAGC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 12, 174
BseNI ACTGG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 335
BshFI GGCC 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 89
BsmI GAATGC 2 cut(s) 176, 385
BsnI GGCC 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 147, 452
BspACI CCGC 4 cut(s) 50, 333, 371, 404
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 2 cut(s) 13, 173
BspTI CTTAAG 1 cut(s) 116
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 2 cut(s) 147, 452
BssT1I CCWWGG 1 cut(s) 426
BstAFI CTTAAG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 21, 160
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 2 cut(s) 150, 455
BstMBI GATC 2 cut(s) 147, 452
BstMWI GCNNNNNNNGC 3 cut(s) 11, 389, 437
BstV1I GCAGC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 1 cut(s) 431
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 406
CviAII CATG 1 cut(s) 82
CviJI RGCY 8 cut(s) 5, 20, 66, 87, 123, 159, 326, 431
CviKI_1 RGCY 8 cut(s) 5, 20, 66, 87, 123, 159, 326, 431
DdeI CTNAG 2 cut(s) 21, 160
DpnI GATC 2 cut(s) 149, 454
DpnII GATC 2 cut(s) 147, 452
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 85
FaiI YATR 5 cut(s) 63, 83, 288, 341, 402
FatI CATG 1 cut(s) 81
FauI CCCGC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 1 cut(s) 431
Hin1II CATG 1 cut(s) 85
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 99, 152
Hpy188III TCNNGA 1 cut(s) 456
HpyAV CCTTC 3 cut(s) 260, 274, 361
HpyCH4V TGCA 4 cut(s) 14, 383, 392, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 389, 437
HpyF3I CTNAG 2 cut(s) 21, 160
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 2 cut(s) 147, 452
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 2 cut(s) 141, 399
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 3 cut(s) 364, 379, 427
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 149, 454
MboI GATC 2 cut(s) 147, 452
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 1 cut(s) 9
MnlI CCTC 3 cut(s) 16, 117, 134
MseI TTAA 3 cut(s) 72, 117, 213
MslI CAYNNNNRTG 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 116
Mva1269I GAATGC 2 cut(s) 176, 385
MwoI GCNNNNNNNGC 3 cut(s) 11, 389, 437
NdeII GATC 2 cut(s) 147, 452
NlaIII CATG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 163
PctI GAATGC 2 cut(s) 176, 385
PkrI GCNGC 1 cut(s) 325
PsiI TTATAA 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 406
PsuI RGATCY 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 358
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 3 cut(s) 72, 117, 213
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 147, 452
Sau96I GGNCC 1 cut(s) 406
SduI GDGCHC 1 cut(s) 89
SetI ASST 7 cut(s) 89, 125, 145, 328, 388, 411, 447
SfaNI GCATC 3 cut(s) 364, 379, 427
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 9
SsiI CCGC 4 cut(s) 50, 333, 371, 404
SstI GAGCTC 1 cut(s) 89
StyI CCWWGG 1 cut(s) 426
TasI AATT 1 cut(s) 9
Tru1I TTAA 3 cut(s) 72, 117, 213
Tru9I TTAA 3 cut(s) 72, 117, 213
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 244, 249
TspRI CASTG 1 cut(s) 168
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.