FvH4_3g29530

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015580
Physical Location & Seq
Reverse (-)
22571179 .. 22571877
699 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29530.t1

Sequence Viewer

Length: 459 bp
ATGGCTCAAATTGCAAAGATTGAGTCCCAAGCAGAGCTGAAATCATCTGCAGCCAAGTTCTATGGCTTTTTCAAGAGCAACATGAGCTCTTTTGTTCAGATGTTCCCTCAAATCTTTAAGAACTTCGAAGTTGTGGGGGGAGGTGAGATCAGAACTGGCTCTGTGACTAAATGGACATACGACCTTGGAGAGGGTGTAATTGCAGCAAAAATCAAAATCCAAGCCTTAGATGATGGAGATACGTCAATTACATTTGTTATCCTTGAAGGAGATGTTTTGAAGGTCTATAAGAGTTTCATGGCAAAGATGCAAGTTACCAAAGCTGGTAATGGTGGGAGCATAGTGAAATGGACCCTTGAATTTGAGAAGGCAAATTCAAATACACCTGATCCAAAAATCTATGCAGAATATGCAATCAAAGTGTCCAAGGGCATTGATGCTTACCTTGGAAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

153

Amino Acids

16.66

Weight (kDa)

8.98

Isoelectric Point (pI)

18.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 149 2.6e-31 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015580)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29520 FvH4_3g29530 FvH4_3g29540
malus_domestica MD11G1160200.v1.1
rosa_chinensis RchiOBHm_Chr5g0054611
rosa_laevigata RLG00000034935 RLG00000034939
rosa_multiflora Rmu_sc0019242.1_g000001
rosa_roxburghii Rroxscaffold_1G00026350
rosa_rugosa Rorug05G0287000
rosa_samantha Rh5AG357400 Rh5BG369400 Rh5BG369500 Rh5CG392100
rosa_wichuraiana Rw5G033560 Rw5G033770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 2 cut(s) 359, 373
AfiI CCNNNNNNNGG 2 cut(s) 190, 451
AgsI TTSAA 5 cut(s) 73, 266, 280, 359, 378
AluBI AGCT 3 cut(s) 37, 87, 323
AluI AGCT 3 cut(s) 37, 87, 323
Alw21I GWGCWC 1 cut(s) 89
AlwI GGATC 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 50, 203
ApoI RAATTY 2 cut(s) 359, 373
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 62, 215
BccI CCATC 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 51, 204
BlsI GCNGC 2 cut(s) 52, 205
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 353
BmsI GCATC 2 cut(s) 297, 427
Bpu14I TTCGAA 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 184, 426, 445
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 451
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 3 cut(s) 184, 426, 445
BseLI CCNNNNNNNGG 2 cut(s) 190, 451
BseNI ACTGG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 62, 215
BsiHKAI GWGCWC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 190, 451
BsmFI GGGAC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 147, 388
BspLI GGNNCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 126
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 184, 426, 445
BssMI GATC 2 cut(s) 147, 388
BssT1I CCWWGG 3 cut(s) 184, 426, 445
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 226
BstENI CCTNNNNNAGG 1 cut(s) 188
BstKTI GATC 2 cut(s) 150, 391
BstMBI GATC 2 cut(s) 147, 388
BstMWI GCNNNNNNNGC 3 cut(s) 11, 84, 410
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 62, 215
Cfr13I GGNCC 1 cut(s) 351
CviAII CATG 2 cut(s) 82, 298
CviJI RGCY 9 cut(s) 5, 37, 53, 66, 87, 159, 224, 323, 455
CviKI_1 RGCY 9 cut(s) 5, 37, 53, 66, 87, 159, 224, 323, 455
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 149, 390
DpnII GATC 2 cut(s) 147, 388
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 3 cut(s) 184, 426, 445
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoT14I CCWWGG 3 cut(s) 184, 426, 445
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 3 cut(s) 184, 426, 445
FaeI CATG 2 cut(s) 85, 301
FaiI YATR 8 cut(s) 63, 83, 178, 288, 299, 341, 402, 411
FaqI GGGAC 1 cut(s) 10
FatI CATG 2 cut(s) 81, 297
Fnu4HI GCNGC 2 cut(s) 51, 204
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 51, 204
GluI GCNGC 2 cut(s) 51, 204
Hin1II CATG 2 cut(s) 85, 301
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 99, 152
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 4 cut(s) 260, 274, 361, 444
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 6 cut(s) 14, 50, 203, 310, 404, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 84, 410
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 2 cut(s) 85, 301
Kzo9I GATC 2 cut(s) 147, 388
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 3 cut(s) 141, 309, 399
Lsp1109I GCAGC 2 cut(s) 62, 215
LweI GCATC 2 cut(s) 297, 427
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 163, 313
MalI GATC 2 cut(s) 149, 390
MboI GATC 2 cut(s) 147, 388
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 5 cut(s) 9, 198, 246, 359, 373
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 3 cut(s) 117, 134, 184
MseI TTAA 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 11, 84, 410
NdeII GATC 2 cut(s) 147, 388
NlaIII CATG 2 cut(s) 85, 301
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 163
NspV TTCGAA 1 cut(s) 126
PkrI GCNGC 2 cut(s) 52, 205
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 351
PstI CTGCAG 1 cut(s) 52
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 51, 204
Sau3AI GATC 2 cut(s) 147, 388
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 89
SetI ASST 9 cut(s) 39, 89, 145, 186, 245, 285, 325, 388, 447
SfaNI GCATC 2 cut(s) 297, 427
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 351
Sse9I AATT 5 cut(s) 9, 198, 246, 359, 373
SstI GAGCTC 1 cut(s) 89
StyI CCWWGG 3 cut(s) 184, 426, 445
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 126
TasI AATT 5 cut(s) 9, 198, 246, 359, 373
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 2 cut(s) 50, 203
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 351
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 359, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.