MD11G1160200.v1.1

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015580
Physical Location & Seq
Forward (+)
15716637 .. 15717645
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1160200.v1.1.491

Sequence Viewer

Length: 459 bp
ATGGCTCAAATTGCCAAGATTGACGCCCAAGCAGAGATAAAATCCTCGCCAGATAAGTTTCATGGCTTCTTCAAGAACAACATCACCTCTTTCCCGCAGATGTTCCCTCAAATCTTCAAGAGCGTTGAAGTAGTAGGAGGAGGTGCGCTCAGAGCCGGTGCCGTCTTTTCTTGCAAATACGACCTTGGAGAGGGTCCAGTGACGGCAAAAATTAAGATTCCAGCGGTAGATGATGAGAATACATCAATCAACTTTGTTGTCCTTGAAGGAGATGTTTTGAAGCTGTATAAGACTTTCAAGGCAAAACTTGAGATTAGCAAAGCAGGAAATGGTGGCAGCACAGTAAAATGGACTTTGGAAGTTGAGAAGGCAAATGCAAATGCACCCGAGCCGAAGCTCTATGCGGATCATGCAATTAAAGTGTCCAAAGGCATTGATGCTTACCTGGGCAGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

153

Amino Acids

16.38

Weight (kDa)

8.89

Isoelectric Point (pI)

20.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 149 1.9e-27 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015580)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29520 FvH4_3g29530 FvH4_3g29540
malus_domestica MD11G1160200.v1.1
rosa_chinensis RchiOBHm_Chr5g0054611
rosa_laevigata RLG00000034935 RLG00000034939
rosa_multiflora Rmu_sc0019242.1_g000001
rosa_roxburghii Rroxscaffold_1G00026350
rosa_rugosa Rorug05G0287000
rosa_samantha Rh5AG357400 Rh5BG369400 Rh5BG369500 Rh5CG392100
rosa_wichuraiana Rw5G033560 Rw5G033770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 3 cut(s) 95, 224, 404
AclWI GGATC 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 190, 451
AgsI TTSAA 6 cut(s) 73, 118, 128, 266, 280, 298
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 2 cut(s) 283, 397
AluI AGCT 2 cut(s) 283, 397
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 194
BanI GGYRCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 348
BceAI ACGGC 2 cut(s) 146, 219
BciT130I CCWGG 1 cut(s) 446
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 160, 195
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 1 cut(s) 427
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpuEI CTTGAG 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 184, 445
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 451
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 2 cut(s) 184, 445
BseLI CCNNNNNNNGG 2 cut(s) 190, 451
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 348
BshNI GGYRCC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 190, 451
BsoBI CYCGRG 1 cut(s) 386
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 3 cut(s) 95, 224, 404
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 160, 195
BspPI GGATC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 184, 445
BssMI GATC 1 cut(s) 406
BssNI GRCGYC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 1 cut(s) 343
BstACI GRCGYC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 1 cut(s) 409
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 3 cut(s) 11, 152, 410
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 204
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 32
CviAII CATG 2 cut(s) 62, 410
CviJI RGCY 7 cut(s) 5, 66, 155, 283, 391, 397, 455
CviKI_1 RGCY 7 cut(s) 5, 66, 155, 283, 391, 397, 455
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 386
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 2 cut(s) 65, 413
FaiI YATR 4 cut(s) 63, 288, 402, 411
FatI CATG 2 cut(s) 61, 409
FauI CCCGC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 337
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 337
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 2 cut(s) 65, 413
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 73, 118
HpyAV CCTTC 2 cut(s) 260, 361
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 4 cut(s) 174, 377, 383, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 152, 410
HpyF3I CTNAG 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 2 cut(s) 65, 413
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 7 cut(s) 63, 169, 210, 234, 309, 431, 436
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 2 cut(s) 61, 106
MluCI AATT 3 cut(s) 9, 210, 414
MnlI CCTC 6 cut(s) 55, 97, 117, 131, 134, 184
MseI TTAA 3 cut(s) 213, 417, 457
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 11, 152, 410
NdeII GATC 1 cut(s) 406
NlaIII CATG 2 cut(s) 65, 413
NlaIV GGNNCC 2 cut(s) 160, 195
NmuCI GTSAC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 160, 195
PspPI GGNCC 1 cut(s) 194
SaqAI TTAA 3 cut(s) 213, 417, 457
SatI GCNGC 1 cut(s) 337
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 446
SetI ASST 6 cut(s) 89, 145, 186, 285, 399, 447
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 9, 210, 414
SsiI CCGC 3 cut(s) 95, 224, 404
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 343
TasI AATT 3 cut(s) 9, 210, 414
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 3 cut(s) 213, 417, 457
Tru9I TTAA 3 cut(s) 213, 417, 457
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 336
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 50
TspRI CASTG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 194
XagI CCTNNNNNAGG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.