RLG00000034939

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015580
Physical Location & Seq
Reverse (-)
57394812 .. 57395719
908 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034939

Sequence Viewer

Length: 468 bp
ATGGCTCAAATTGCAAAGATTGAGTCACACGCAGAGCTGAAATCATCTGCAGAGAAGTTCTATGGCTTTTTCAAGAACAACATGAGCTCTTTTGTTCAGATGTTCCCTCAAATCTTTAAGAACTTCGAAGTTGTGGGGGGAGGTGAGATCAGAGCTGGCTCCGTGACTAAATGGACATACGACATTGGAGAGGGTGTAATGGCAGCAAAAATCAAAATCCAAGCCTTAGATGATGGAAATACGTCAATTACGTTTCTTGTCCTTGAAGGAGATCTTTTGAAGGTCTATAACAGTTTCAAGGCAAAGCTGCAACTTACCAAAGCTGGTAATGGTGGGAGCATAGTGAAATGGACCCTTGAATTTGAGAAGGCAAATGCAAATTCACCTGATCCAAAAATCTATGCAGAACAAGCAATTAAAGTGTCCAAGGGCATTGATGCTTACCTTGGAAGGGCTTCATCACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

156

Amino Acids

16.98

Weight (kDa)

9.0

Isoelectric Point (pI)

20.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 149 3e-31 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015580)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29520 FvH4_3g29530 FvH4_3g29540
malus_domestica MD11G1160200.v1.1
rosa_chinensis RchiOBHm_Chr5g0054611
rosa_laevigata RLG00000034935 RLG00000034939
rosa_multiflora Rmu_sc0019242.1_g000001
rosa_roxburghii Rroxscaffold_1G00026350
rosa_rugosa Rorug05G0287000
rosa_samantha Rh5AG357400 Rh5BG369400 Rh5BG369500 Rh5CG392100
rosa_wichuraiana Rw5G033560 Rw5G033770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 2 cut(s) 359, 379
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 5 cut(s) 73, 266, 280, 298, 359
AluBI AGCT 5 cut(s) 37, 87, 155, 307, 323
AluI AGCT 5 cut(s) 37, 87, 155, 307, 323
Alw21I GWGCWC 1 cut(s) 89
AlwI GGATC 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 203, 307
ApoI RAATTY 2 cut(s) 359, 379
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
Asp700I GAANNNNTTC 1 cut(s) 454
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 155, 375
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 2 cut(s) 215, 294
BccI CCATC 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 48
BglII AGATCT 1 cut(s) 271
BisI GCNGC 2 cut(s) 204, 308
BlsI GCNGC 2 cut(s) 205, 309
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 160, 353
BmsI GCATC 1 cut(s) 427
Bpu14I TTCGAA 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 426, 445
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 451
BseDI CCNNGG 2 cut(s) 426, 445
BseLI CCNNNNNNNGG 1 cut(s) 451
BseXI GCAGC 2 cut(s) 215, 294
BsiHKAI GWGCWC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 147, 271, 388
BspLI GGNNCC 2 cut(s) 160, 353
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 426, 445
BssMI GATC 3 cut(s) 147, 271, 388
BssT1I CCWWGG 2 cut(s) 426, 445
Bst4CI ACNGT 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 226
BstKTI GATC 3 cut(s) 150, 274, 391
BstMBI GATC 3 cut(s) 147, 271, 388
BstMWI GCNNNNNNNGC 2 cut(s) 11, 410
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 215, 294
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 351
CviAII CATG 1 cut(s) 82
DdeI CTNAG 1 cut(s) 226
DpnI GATC 3 cut(s) 149, 273, 390
DpnII GATC 3 cut(s) 147, 271, 388
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 2 cut(s) 426, 445
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 426, 445
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 2 cut(s) 426, 445
FaeI CATG 1 cut(s) 85
FaiI YATR 6 cut(s) 63, 83, 178, 288, 341, 402
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 204, 308
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 204, 308
GluI GCNGC 2 cut(s) 204, 308
Hin1II CATG 1 cut(s) 85
HinfI GANTC 1 cut(s) 23
HphI GGTGA 2 cut(s) 155, 375
Hpy188I TCNGA 2 cut(s) 99, 152
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 4 cut(s) 260, 274, 361, 444
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 2 cut(s) 242, 251
HpyCH4V TGCA 5 cut(s) 14, 50, 310, 377, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 410
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 2 cut(s) 242, 251
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 3 cut(s) 147, 271, 388
LmnI GCTCC 2 cut(s) 164, 336
LpnPI CCDG 3 cut(s) 141, 309, 399
Lsp1109I GCAGC 2 cut(s) 215, 294
LweI GCATC 1 cut(s) 427
MaeII ACGT 2 cut(s) 242, 251
MaeIII GTNAC 2 cut(s) 24, 163
MalI GATC 3 cut(s) 149, 273, 390
MboI GATC 3 cut(s) 147, 271, 388
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 5 cut(s) 9, 246, 359, 379, 414
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 3 cut(s) 117, 134, 184
MroXI GAANNNNTTC 1 cut(s) 454
MseI TTAA 2 cut(s) 117, 417
MwoI GCNNNNNNNGC 2 cut(s) 11, 410
NdeII GATC 3 cut(s) 147, 271, 388
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 160, 353
NmuCI GTSAC 2 cut(s) 24, 163
NspV TTCGAA 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 454
PkrI GCNGC 2 cut(s) 205, 309
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 160, 353
PspPI GGNCC 1 cut(s) 351
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 271
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 117, 417
SatI GCNGC 2 cut(s) 204, 308
Sau3AI GATC 3 cut(s) 147, 271, 388
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 351
Sse9I AATT 5 cut(s) 9, 246, 359, 379, 414
SstI GAGCTC 1 cut(s) 89
StyI CCWWGG 2 cut(s) 426, 445
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 2 cut(s) 245, 254
TaqI TCGA 1 cut(s) 126
TasI AATT 5 cut(s) 9, 246, 359, 379, 414
Tru1I TTAA 2 cut(s) 117, 417
Tru9I TTAA 2 cut(s) 117, 417
TseFI GTSAC 2 cut(s) 24, 163
TseI GCWGC 2 cut(s) 203, 307
Tsp45I GTSAC 2 cut(s) 24, 163
TspDTI ATGAA 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 2 cut(s) 359, 379
XmnI GAANNNNTTC 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.