RLG00000034935

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015580
Physical Location & Seq
Forward (+)
57320500 .. 57322968
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034935

Sequence Viewer

Length: 435 bp
ATGGCTCAAATTGCAAAGGTTGAGGGTCAAGCAGAGATAAAATCATCGGCGGACAAGTTGTATGGCTTCTCTAAGAACAACATGAGCTCTTGTGTCCAAATGTTCTCTCAAATCCTTAAGAGCTTTGAAGTTGTGGGGGGAGGTGAGATCATAACTGGCTCAGTGACAAAATGGGCATTCAACATTGATGGCCGCGCTAGAGCGATTCATCGACGCCTATTACTGACTCCTGCAAGGGAGATTTCTCGTCTGCGATTGATTTCTATTGGTGGGGGACTTGTATCTTGGATTAGGAGGGGTGGCGGTGCTTTCTATCCTTCTCTTCTTCTTGGTGATAGTGGTACCGTCCGTGGTGTTGGTAGATCTGGTCTATGTTGCTTGGTTGTTGGCCACAGTGGTGTGGCTGATCTGGAGATGATAGGGCCTAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

145

Amino Acids

15.32

Weight (kDa)

9.85

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015580)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29520 FvH4_3g29530 FvH4_3g29540
malus_domestica MD11G1160200.v1.1
rosa_chinensis RchiOBHm_Chr5g0054611
rosa_laevigata RLG00000034935 RLG00000034939
rosa_multiflora Rmu_sc0019242.1_g000001
rosa_roxburghii Rroxscaffold_1G00026350
rosa_rugosa Rorug05G0287000
rosa_samantha Rh5AG357400 Rh5BG369400 Rh5BG369500 Rh5CG392100
rosa_wichuraiana Rw5G033560 Rw5G033770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AccII CGCG 1 cut(s) 195
AciI CCGC 3 cut(s) 50, 193, 303
AcoI YGGCCR 2 cut(s) 190, 388
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 343
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 128, 181
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 2 cut(s) 87, 123
AluI AGCT 2 cut(s) 87, 123
Alw21I GWGCWC 1 cut(s) 89
AoxI GGCC 3 cut(s) 190, 388, 422
Asp718I GGTACC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 2 cut(s) 155, 344
BalI TGGCCA 1 cut(s) 390
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 89
BccI CCATC 1 cut(s) 182
BfaI CTAG 3 cut(s) 198, 426, 433
BfrI CTTAAG 1 cut(s) 116
BglII AGATCT 1 cut(s) 362
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 3 cut(s) 192, 390, 424
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 3 cut(s) 192, 390, 424
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 147, 362, 406
BspACI CCGC 3 cut(s) 50, 193, 303
BspANI GGCC 3 cut(s) 192, 390, 424
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 341
BspTI CTTAAG 1 cut(s) 116
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 3 cut(s) 147, 362, 406
BssNI GRCGYC 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 346, 395
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 214
BstAFI CTTAAG 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 72, 160
BstDSI CCRYGG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 3 cut(s) 150, 365, 409
BstMBI GATC 3 cut(s) 147, 362, 406
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstUI CGCG 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 3 cut(s) 192, 390, 424
BtgI CCRYGG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 168, 400
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 342
CviAII CATG 1 cut(s) 82
CviJI RGCY 9 cut(s) 5, 66, 87, 123, 159, 192, 390, 404, 424
CviKI_1 RGCY 9 cut(s) 5, 66, 87, 123, 159, 192, 390, 404, 424
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 2 cut(s) 72, 160
DpnI GATC 3 cut(s) 149, 364, 408
DpnII GATC 3 cut(s) 147, 362, 406
EaeI YGGCCR 2 cut(s) 190, 388
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 89
FaeI CATG 1 cut(s) 85
FaiI YATR 4 cut(s) 63, 83, 152, 373
FaqI GGGAC 1 cut(s) 288
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 3 cut(s) 198, 426, 433
GlaI GCGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 3 cut(s) 192, 390, 424
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 2 cut(s) 205, 226
HphI GGTGA 2 cut(s) 155, 344
Hpy188III TCNNGA 1 cut(s) 410
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 2 cut(s) 346, 395
HpyCH4V TGCA 2 cut(s) 14, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 72, 160
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 195
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 3 cut(s) 147, 362, 406
LpnPI CCDG 4 cut(s) 141, 243, 351, 395
MaeI CTAG 3 cut(s) 198, 426, 433
MaeIII GTNAC 1 cut(s) 163
MalI GATC 3 cut(s) 149, 364, 408
MboI GATC 3 cut(s) 147, 362, 406
MboII GAAGA 2 cut(s) 314, 317
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 1 cut(s) 9
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 3 cut(s) 16, 134, 288
Mox20I TGGCCA 1 cut(s) 390
MscI TGGCCA 1 cut(s) 390
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 396
Msp20I TGGCCA 1 cut(s) 390
MspCI CTTAAG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 176
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 147, 362, 406
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 396
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 194
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 422
PsuI RGATCY 1 cut(s) 362
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 3 cut(s) 147, 362, 406
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 89
SetI ASST 4 cut(s) 21, 89, 125, 145
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 9
SsiI CCGC 3 cut(s) 50, 193, 303
SspMI CTAG 3 cut(s) 198, 426, 433
SstI GAGCTC 1 cut(s) 89
TaaI ACNGT 2 cut(s) 346, 395
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 9
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 168, 400
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 2 cut(s) 168, 400
Vha464I CTTAAG 1 cut(s) 116
XspI CTAG 3 cut(s) 198, 426, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.