Rroxscaffold_1G00026350

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015580
Physical Location & Seq
Forward (+)
33188111 .. 33191276
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026350.1

Sequence Viewer

Length: 489 bp
ATGGCTCAAATTGCAAAGATTGAGTCGCACGCAGAGCTGAAATCATCTGCAGAGAAGTTCTATGGCTTTTTCAAGAACAGCATGAGCTCTTTTGTTCAGATGTTCCCTCAAATCTTTAAGAACTTCGAAGTTGTGGGGGAGGAGAGATCAGAGCAGGCTTCGGGTGTGGAAACAACAAAACTTAAAATCCAAGAAGCAGATGATGAAAACACAACGATCACGATCATTGGTCTTGAAGGAGATATTTTGAAGGGTTATAAGAGTTTCAAGGAGAAGCTCCAAGTTATTAAAGCAGGGAGCATAGTGAAATGGGCATTCGAGTGTGAGAAGGCAAATGCAAATGCACCTGATGCAAAGATAGGCATGCGGACCTTTCAGTTAAAGTGCCCAAGGCCATTGATGCTTACCTTTGCAGGACTTGATTCTCATTATAACAAATCAACTCTCTACTCTCTTTCATACCTAGTGGTTAATCAAGTGAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

162

Amino Acids

18.15

Weight (kDa)

7.71

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 119 8.4e-14 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015580)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29520 FvH4_3g29530 FvH4_3g29540
malus_domestica MD11G1160200.v1.1
rosa_chinensis RchiOBHm_Chr5g0054611
rosa_laevigata RLG00000034935 RLG00000034939
rosa_multiflora Rmu_sc0019242.1_g000001
rosa_roxburghii Rroxscaffold_1G00026350
rosa_rugosa Rorug05G0287000
rosa_samantha Rh5AG357400 Rh5BG369400 Rh5BG369500 Rh5CG392100
rosa_wichuraiana Rw5G033560 Rw5G033770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 258, 432
AciI CCGC 1 cut(s) 367
AgsI TTSAA 4 cut(s) 73, 236, 250, 268
AluBI AGCT 4 cut(s) 37, 87, 277, 486
AluI AGCT 4 cut(s) 37, 87, 277, 486
Alw21I GWGCWC 1 cut(s) 89
AoxI GGCC 1 cut(s) 392
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspS9I GGNCC 1 cut(s) 369
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 89
BfaI CTAG 2 cut(s) 464, 487
BfmI CTRYAG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmsI GCATC 2 cut(s) 340, 390
Bpu14I TTCGAA 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 389
Bse8I GATNNNNATC 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 389
BseJI GATNNNNATC 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 389
BshFI GGCC 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 394
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 89, 389
Bsp143I GATC 3 cut(s) 146, 216, 222
BspACI CCGC 1 cut(s) 367
BspANI GGCC 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 3 cut(s) 146, 216, 222
BssT1I CCWWGG 1 cut(s) 389
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 30, 156, 365
BstKTI GATC 3 cut(s) 149, 219, 225
BstMBI GATC 3 cut(s) 146, 216, 222
BstMWI GCNNNNNNNGC 4 cut(s) 11, 34, 350, 400
BstNSI RCATGY 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 394
Cac8I GCNNGC 3 cut(s) 30, 156, 365
Cfr13I GGNCC 1 cut(s) 369
CviAII CATG 2 cut(s) 82, 364
CviJI RGCY 8 cut(s) 5, 37, 66, 87, 158, 277, 394, 486
CviKI_1 RGCY 8 cut(s) 5, 37, 66, 87, 158, 277, 394, 486
DpnI GATC 3 cut(s) 148, 218, 224
DpnII GATC 3 cut(s) 146, 216, 222
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 389
FaeI CATG 2 cut(s) 85, 367
FaiI YATR 7 cut(s) 63, 83, 258, 302, 365, 432, 460
FatI CATG 2 cut(s) 81, 363
FriOI GRGCYC 1 cut(s) 89
FspBI CTAG 2 cut(s) 464, 487
HaeIII GGCC 1 cut(s) 394
Hin1II CATG 2 cut(s) 85, 367
HinfI GANTC 2 cut(s) 23, 422
Hpy188I TCNGA 2 cut(s) 99, 151
Hpy188III TCNNGA 3 cut(s) 73, 220, 233
HpyAV CCTTC 3 cut(s) 230, 244, 322
HpyCH4V TGCA 6 cut(s) 14, 50, 338, 344, 353, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 34, 350, 400
Hsp92II CATG 2 cut(s) 85, 367
Kzo9I GATC 3 cut(s) 146, 216, 222
LmnI GCTCC 2 cut(s) 282, 297
LpnPI CCDG 4 cut(s) 140, 279, 360, 399
LweI GCATC 2 cut(s) 340, 390
MaeI CTAG 2 cut(s) 464, 487
MalI GATC 3 cut(s) 148, 218, 224
MboI GATC 3 cut(s) 146, 216, 222
MhlI GDGCHC 2 cut(s) 89, 389
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 2 cut(s) 117, 133
MseI TTAA 5 cut(s) 117, 183, 288, 380, 471
MslI CAYNNNNRTG 1 cut(s) 319
Mva1269I GAATGC 1 cut(s) 314
MwoI GCNNNNNNNGC 4 cut(s) 11, 34, 350, 400
NdeII GATC 3 cut(s) 146, 216, 222
NlaIII CATG 2 cut(s) 85, 367
NspI RCATGY 1 cut(s) 367
NspV TTCGAA 1 cut(s) 126
PaeI GCATGC 1 cut(s) 367
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 422
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PsiI TTATAA 2 cut(s) 258, 432
Psp124BI GAGCTC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 369
PstI CTGCAG 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 319
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 5 cut(s) 117, 183, 288, 380, 471
Sau3AI GATC 3 cut(s) 146, 216, 222
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 2 cut(s) 89, 389
SetI ASST 8 cut(s) 39, 89, 279, 349, 374, 410, 465, 488
SfaNI GCATC 2 cut(s) 340, 390
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 319
SphI GCATGC 1 cut(s) 367
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 367
SspMI CTAG 2 cut(s) 464, 487
SstI GAGCTC 1 cut(s) 89
StyI CCWWGG 1 cut(s) 389
TaqI TCGA 2 cut(s) 126, 318
TasI AATT 1 cut(s) 9
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 5 cut(s) 117, 183, 288, 380, 471
Tru9I TTAA 5 cut(s) 117, 183, 288, 380, 471
TspDTI ATGAA 2 cut(s) 219, 447
VpaK11BI GGWCC 1 cut(s) 369
XceI RCATGY 1 cut(s) 367
XspI CTAG 2 cut(s) 464, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.