FvH4_3g29540

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015580
Physical Location & Seq
Reverse (-)
22573322 .. 22573909
588 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29540.t1

Sequence Viewer

Length: 459 bp
ATGGCCAAGATTGGCAAGCTTGAGAGTCAGACACAGATAAACGCATCAGCAGATAAGTTCTTTGGTTTCTTTAAAAATAATATGACCAAATTTGTTCAGATTTTCCCTCAAAACTTCAAGGGCTTTCAAGTAGTGGGAGGAGGTGAGATTAGAGCTGCATGCGAGATTTACTGGAAATATGACATTGGGAGTGGCGTACTGACAGCAAAGCTTAAAGTCCAAGCAATAGATGATGAAAACAGATCAATCACCTTTATTTTTCTGGAAGGAGATGCCTTGAAGGTGTATAAGAGTTTCAAGGCAAAAATGCAAGCAAACAAAGCAGGTAATGGTGGTTGCACAGTCAAATGGACGATGGAATTTGAGAAGGCAAATGAAAATGTACCAGATCCAAAAGGCTATACAGAACTTGGCGAAAAAGTGTCGAGAGGCCTTGATGCTTACCTTGCTGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

153

Amino Acids

16.85

Weight (kDa)

8.98

Isoelectric Point (pI)

17.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 4 - 150 1.9e-31 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015580)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29520 FvH4_3g29530 FvH4_3g29540
malus_domestica MD11G1160200.v1.1
rosa_chinensis RchiOBHm_Chr5g0054611
rosa_laevigata RLG00000034935 RLG00000034939
rosa_multiflora Rmu_sc0019242.1_g000001
rosa_roxburghii Rroxscaffold_1G00026350
rosa_rugosa Rorug05G0287000
rosa_samantha Rh5AG357400 Rh5BG369400 Rh5BG369500 Rh5CG392100
rosa_wichuraiana Rw5G033560 Rw5G033770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 89, 359
AfaI GTAC 2 cut(s) 198, 384
AgsI TTSAA 4 cut(s) 118, 128, 280, 298
AluBI AGCT 3 cut(s) 19, 155, 211
AluI AGCT 3 cut(s) 19, 155, 211
AlwI GGATC 1 cut(s) 383
AoxI GGCC 2 cut(s) 3, 430
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 89, 359
AsuHPI GGTGA 2 cut(s) 155, 241
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmsI GCATC 3 cut(s) 53, 262, 427
BpuEI CTTGAG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 449
BshFI GGCC 2 cut(s) 5, 432
BsnI GGCC 2 cut(s) 5, 432
Bsp143I GATC 2 cut(s) 242, 388
BspANI GGCC 2 cut(s) 5, 432
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 176
BssMI GATC 2 cut(s) 242, 388
Bst4CI ACNGT 1 cut(s) 343
BstC8I GCNNGC 3 cut(s) 17, 160, 312
BstKTI GATC 2 cut(s) 245, 391
BstMBI GATC 2 cut(s) 242, 388
BstMWI GCNNNNNNNGC 2 cut(s) 320, 446
BstNSI RCATGY 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 2 cut(s) 5, 432
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 17, 160, 312
Csp6I GTAC 2 cut(s) 197, 383
CviAII CATG 1 cut(s) 159
CviJI RGCY 7 cut(s) 5, 19, 123, 155, 211, 399, 432
CviKI_1 RGCY 7 cut(s) 5, 19, 123, 155, 211, 399, 432
CviQI GTAC 2 cut(s) 197, 383
DpnI GATC 2 cut(s) 244, 390
DpnII GATC 2 cut(s) 242, 388
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 432
FaeI CATG 1 cut(s) 162
FaiI YATR 5 cut(s) 83, 160, 180, 288, 402
FatI CATG 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 453
HaeIII GGCC 2 cut(s) 5, 432
Hin1II CATG 1 cut(s) 162
HindIII AAGCTT 2 cut(s) 17, 209
HinfI GANTC 1 cut(s) 25
HphI GGTGA 2 cut(s) 155, 241
Hpy188I TCNGA 2 cut(s) 30, 99
Hpy188III TCNNGA 2 cut(s) 263, 426
HpyAV CCTTC 3 cut(s) 260, 274, 361
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 158, 310, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 446
Hsp92II CATG 1 cut(s) 162
Kzo9I GATC 2 cut(s) 242, 388
LpnPI CCDG 5 cut(s) 157, 248, 309, 399, 435
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 3 cut(s) 53, 262, 427
MalI GATC 2 cut(s) 244, 390
MboI GATC 2 cut(s) 242, 388
MflI RGATCY 1 cut(s) 388
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 89, 359
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 4 cut(s) 117, 131, 134, 422
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 72, 213
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 320, 446
NdeII GATC 2 cut(s) 242, 388
NlaIII CATG 1 cut(s) 162
NspI RCATGY 1 cut(s) 162
PaeI GCATGC 1 cut(s) 162
PceI AGGCCT 1 cut(s) 432
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 449
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 2 cut(s) 198, 384
RsaNI GTAC 2 cut(s) 197, 383
SaqAI TTAA 2 cut(s) 72, 213
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 242, 388
SchI GAGTC 1 cut(s) 34
SetI ASST 8 cut(s) 21, 145, 157, 213, 254, 285, 328, 447
SfaNI GCATC 3 cut(s) 53, 262, 427
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SphI GCATGC 1 cut(s) 162
Sse9I AATT 2 cut(s) 89, 359
SseBI AGGCCT 1 cut(s) 432
StuI AGGCCT 1 cut(s) 432
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 425
TasI AATT 2 cut(s) 89, 359
Tru1I TTAA 2 cut(s) 72, 213
Tru9I TTAA 2 cut(s) 72, 213
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 249, 390
XapI RAATTY 2 cut(s) 89, 359
XceI RCATGY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.