FvH4_3g30690

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016801
Physical Location & Seq
Forward (+)
24066102 .. 24066963
862 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30690.t1

Sequence Viewer

Length: 390 bp
ATGGAGGTTGCGAAGATGATCAGCAGCAACGCGTCAGAAGCTACAGAGAAGGTGGAGGCGAGTCGTCGGCGTTACGAGATGGTGTGGCAGCTGGGATCATGCGACAGGGTGGTGGTGGTCAGCGCGAGCGGCTGCCCCATGTGCACCGTGGCGGAGCATCTCCTCTTCAGCCTCGGAGTTGGCCCCACCATCGTAGTGCTGGACCGCCATGTGGACGGACCGGCCATTAGGGAGGTCCTCCGCGAGATGATGGAGGATGAGCAGCAGCCTGCGGTTCCGGCGGTGTTCATCGGAGGCAAGTTTTTGGGAGCCGTGGAGGCGCTCATGGCTTACCACATCAACGGCAACCTAGTTCCTCTGCTCAAGCACTCCGGCGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

130

Amino Acids

14.03

Weight (kDa)

5.51

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 37 - 101 6.5e-11 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 3 cut(s) 32, 125, 243
AciI CCGC 6 cut(s) 129, 152, 205, 241, 272, 281
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 30
AluBI AGCT 2 cut(s) 41, 91
AluI AGCT 2 cut(s) 41, 91
Alw21I GWGCWC 1 cut(s) 146
Alw44I GTGCAC 1 cut(s) 142
AlwI GGATC 1 cut(s) 103
AoxI GGCC 2 cut(s) 181, 222
ApaLI GTGCAC 1 cut(s) 142
ApeKI GCWGC 5 cut(s) 24, 88, 132, 262, 265
AspLEI GCGC 3 cut(s) 125, 322, 377
AspS9I GGNCC 4 cut(s) 182, 202, 218, 235
AvaII GGWCC 3 cut(s) 202, 218, 235
BaeGI GKGCMC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 5 cut(s) 36, 100, 119, 274, 277
BccI CCATC 3 cut(s) 73, 197, 244
BceAI ACGGC 2 cut(s) 296, 358
BclI TGATCA 1 cut(s) 18
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 2 cut(s) 323, 378
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 6 cut(s) 25, 89, 130, 133, 263, 266
BlsI GCNGC 6 cut(s) 26, 90, 131, 134, 264, 267
Bme18I GGWCC 3 cut(s) 202, 218, 235
BmgT120I GGNCC 4 cut(s) 182, 202, 218, 235
BmiI GGNNCC 3 cut(s) 184, 276, 310
BmsI GCATC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 147, 172, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse118I RCCGGY 1 cut(s) 220
BseDI CCNNGG 3 cut(s) 147, 172, 312
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 5 cut(s) 36, 100, 119, 274, 277
BseYI CCCAGC 1 cut(s) 91
Bsh1236I CGCG 3 cut(s) 32, 125, 243
BshFI GGCC 2 cut(s) 183, 224
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 3 cut(s) 221, 278, 372
BslI CCNNNNNNNGG 1 cut(s) 211
BsnI GGCC 2 cut(s) 183, 224
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 18, 95
BspACI CCGC 6 cut(s) 129, 152, 205, 241, 272, 281
BspANI GGCC 2 cut(s) 183, 224
BspFNI CGCG 3 cut(s) 32, 125, 243
BspLI GGNNCC 3 cut(s) 184, 276, 310
BspPI GGATC 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 147, 172, 312
BssMI GATC 2 cut(s) 18, 95
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 127, 270
BstDSI CCRYGG 2 cut(s) 147, 312
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 3 cut(s) 32, 125, 243
BstH2I RGCGCY 2 cut(s) 323, 378
BstHHI GCGC 3 cut(s) 125, 322, 377
BstKTI GATC 2 cut(s) 21, 98
BstMBI GATC 2 cut(s) 18, 95
BstMWI GCNNNNNNNGC 6 cut(s) 38, 129, 141, 278, 317, 326
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 3 cut(s) 32, 125, 243
BstV1I GCAGC 5 cut(s) 36, 100, 119, 274, 277
BsuRI GGCC 2 cut(s) 183, 224
BtgI CCRYGG 2 cut(s) 147, 312
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 127, 270
CfoI GCGC 3 cut(s) 125, 322, 377
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 4 cut(s) 182, 202, 218, 235
CpoI CGGWCCG 1 cut(s) 218
CseI GACGC 1 cut(s) 21
CspI CGGWCCG 1 cut(s) 218
CviAII CATG 4 cut(s) 99, 139, 209, 325
DpnI GATC 2 cut(s) 20, 97
DpnII GATC 2 cut(s) 18, 95
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 167
Eco47I GGWCC 3 cut(s) 202, 218, 235
Eco57I CTGAAG 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 235
FaeI CATG 4 cut(s) 102, 142, 212, 328
FaiI YATR 4 cut(s) 100, 140, 210, 326
FatI CATG 4 cut(s) 98, 138, 208, 324
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 6 cut(s) 25, 89, 130, 133, 263, 266
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 6 cut(s) 25, 89, 130, 133, 263, 266
FspBI CTAG 1 cut(s) 350
GlaI GCGC 3 cut(s) 124, 321, 376
GluI GCNGC 6 cut(s) 25, 89, 130, 133, 263, 266
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 2 cut(s) 323, 378
HaeIII GGCC 2 cut(s) 183, 224
HapII CCGG 3 cut(s) 221, 278, 372
HgaI GACGC 1 cut(s) 21
HhaI GCGC 3 cut(s) 125, 322, 377
Hin1II CATG 4 cut(s) 102, 142, 212, 328
Hin6I GCGC 3 cut(s) 123, 320, 375
HinP1I GCGC 3 cut(s) 123, 320, 375
HinfI GANTC 1 cut(s) 61
HpaII CCGG 3 cut(s) 221, 278, 372
Hpy166II GTNNAC 2 cut(s) 144, 214
Hpy188I TCNGA 4 cut(s) 37, 176, 293, 389
Hpy8I GTNNAC 2 cut(s) 144, 214
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 129, 141, 278, 317, 326
Hsp92II CATG 4 cut(s) 102, 142, 212, 328
HspAI GCGC 3 cut(s) 123, 320, 375
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 2 cut(s) 18, 95
LmnI GCTCC 2 cut(s) 154, 308
LpnPI CCDG 8 cut(s) 77, 91, 185, 234, 282, 291, 367, 385
Lsp1109I GCAGC 5 cut(s) 36, 100, 119, 274, 277
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 20, 97
MbiI CCGCTC 1 cut(s) 129
MboI GATC 2 cut(s) 18, 95
MboII GAAGA 2 cut(s) 25, 157
MhlI GDGCHC 1 cut(s) 146
MluI ACGCGT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 9 cut(s) 49, 173, 182, 226, 247, 248, 287, 310, 366
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 3 cut(s) 221, 278, 372
MvnI CGCG 3 cut(s) 32, 125, 243
MwoI GCNNNNNNNGC 6 cut(s) 38, 129, 141, 278, 317, 326
NdeII GATC 2 cut(s) 18, 95
NlaIII CATG 4 cut(s) 102, 142, 212, 328
NlaIV GGNNCC 3 cut(s) 184, 276, 310
PkrI GCNGC 6 cut(s) 26, 90, 131, 134, 264, 267
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 3 cut(s) 184, 276, 310
PspPI GGNCC 4 cut(s) 182, 202, 218, 235
PspPPI RGGWCCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 194
Rsr2I CGGWCCG 1 cut(s) 218
RsrII CGGWCCG 1 cut(s) 218
SatI GCNGC 6 cut(s) 25, 89, 130, 133, 263, 266
Sau3AI GATC 2 cut(s) 18, 95
Sau96I GGNCC 4 cut(s) 182, 202, 218, 235
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 9, 43, 54, 93, 237, 351
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 3 cut(s) 202, 218, 235
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SsiI CCGC 6 cut(s) 129, 152, 205, 241, 272, 281
SspMI CTAG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 148
TauI GCSGC 1 cut(s) 132
TseI GCWGC 5 cut(s) 24, 88, 132, 262, 265
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 231
VneI GTGCAC 1 cut(s) 142
VpaK11BI GGWCC 3 cut(s) 202, 218, 235
XcmI CCANNNNNNNNNTGG 2 cut(s) 145, 196
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.