Rh5CG122700

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016801
Physical Location & Seq
Forward (+)
10186714 .. 10187049
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG122700.1

Sequence Viewer

Length: 336 bp
ATGATGAGCCGGCCCTACGAGATGGTGAGGCAGCTAGGGTCATGCAACGCGGTGGTTGTGTTCAGCGCGAGCGGCTGCCCAATGTGCACCGTGGCCGAGCGCCTCCTCTTCAGCCTAGGAGTTGGCCCCACCATCGTGGAGCTGGACCGCCACGTGGAGGGGCCGGACATAAGGGAGGTGCTCCGAGAGCTGGCGGATGGGCAGGGGCAGCAGCAGCCGGTTCCGGCGGTGTTCATTGGAGGGAAGTTCTTGGGCGGCGTGGAGGCACTGATGGCTTGCCACATCAACGGCAACCTCGTCCCTCTTCTCAAGCACTCCGGCGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

111

Amino Acids

11.9

Weight (kDa)

5.84

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 18 - 83 1.8e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 72
AccII CGCG 2 cut(s) 50, 68
AciI CCGC 6 cut(s) 50, 72, 148, 194, 227, 255
AcoI YGGCCR 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 94
AcvI CACGTG 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 154, 157, 190
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 3 cut(s) 34, 142, 190
AluI AGCT 3 cut(s) 34, 142, 190
Alw21I GWGCWC 2 cut(s) 89, 183
Alw44I GTGCAC 1 cut(s) 85
AoxI GGCC 4 cut(s) 11, 93, 124, 161
ApaLI GTGCAC 1 cut(s) 85
ApeKI GCWGC 5 cut(s) 31, 75, 208, 211, 214
AspA2I CCTAGG 1 cut(s) 115
AspLEI GCGC 3 cut(s) 68, 102, 323
AspS9I GGNCC 4 cut(s) 12, 125, 145, 161
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 145
AvrII CCTAGG 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 89
BbrPI CACGTG 1 cut(s) 154
Bbv12I GWGCWC 2 cut(s) 89, 183
BbvI GCAGC 5 cut(s) 43, 62, 220, 223, 226
BccI CCATC 4 cut(s) 16, 140, 191, 265
BceAI ACGGC 1 cut(s) 304
BfaI CTAG 2 cut(s) 35, 116
BfoI RGCGCY 2 cut(s) 103, 324
BisI GCNGC 7 cut(s) 32, 73, 76, 209, 212, 215, 256
BlnI CCTAGG 1 cut(s) 115
BlsI GCNGC 7 cut(s) 33, 74, 77, 210, 213, 216, 257
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 4 cut(s) 12, 125, 145, 161
BmiI GGNNCC 3 cut(s) 127, 162, 222
BpuEI CTTGAG 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 90, 115
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 157, 190
Bse118I RCCGGY 2 cut(s) 9, 217
BseDI CCNNGG 2 cut(s) 90, 115
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 3 cut(s) 154, 157, 190
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 5 cut(s) 43, 62, 220, 223, 226
Bsh1236I CGCG 2 cut(s) 50, 68
BshFI GGCC 4 cut(s) 13, 95, 126, 163
BsiHKAI GWGCWC 2 cut(s) 89, 183
BsiSI CCGG 5 cut(s) 10, 164, 218, 224, 318
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 154, 157, 190
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 4 cut(s) 13, 95, 126, 163
Bsp1286I GDGCHC 2 cut(s) 89, 183
BspACI CCGC 6 cut(s) 50, 72, 148, 194, 227, 255
BspANI GGCC 4 cut(s) 13, 95, 126, 163
BspFNI CGCG 2 cut(s) 50, 68
BspLI GGNNCC 3 cut(s) 127, 162, 222
BsrBI CCGCTC 1 cut(s) 72
BsrFI RCCGGY 2 cut(s) 9, 217
BssAI RCCGGY 2 cut(s) 9, 217
BssECI CCNNGG 2 cut(s) 90, 115
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 113, 309
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 4 cut(s) 11, 70, 192, 277
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 2 cut(s) 50, 68
BstH2I RGCGCY 2 cut(s) 103, 324
BstHHI GCGC 3 cut(s) 68, 102, 323
BstMWI GCNNNNNNNGC 6 cut(s) 72, 84, 187, 208, 214, 272
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 2 cut(s) 50, 68
BstV1I GCAGC 5 cut(s) 43, 62, 220, 223, 226
BstXI CCANNNNNNTGG 1 cut(s) 136
BsuRI GGCC 4 cut(s) 13, 95, 126, 163
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 4 cut(s) 11, 70, 192, 277
CfoI GCGC 3 cut(s) 68, 102, 323
Cfr10I RCCGGY 2 cut(s) 9, 217
Cfr13I GGNCC 4 cut(s) 12, 125, 145, 161
CviAII CATG 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 2 cut(s) 113, 309
EarI CTCTTC 2 cut(s) 113, 309
EciI GGCGGA 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 94
Eco72I CACGTG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 45
FaiI YATR 2 cut(s) 43, 170
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 7 cut(s) 32, 73, 76, 209, 212, 215, 256
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 7 cut(s) 32, 73, 76, 209, 212, 215, 256
FspBI CTAG 2 cut(s) 35, 116
GlaI GCGC 3 cut(s) 67, 101, 322
GluI GCNGC 7 cut(s) 32, 73, 76, 209, 212, 215, 256
HaeII RGCGCY 2 cut(s) 103, 324
HaeIII GGCC 4 cut(s) 13, 95, 126, 163
HapII CCGG 5 cut(s) 10, 164, 218, 224, 318
HhaI GCGC 3 cut(s) 68, 102, 323
Hin1II CATG 1 cut(s) 45
Hin6I GCGC 3 cut(s) 66, 100, 321
HinP1I GCGC 3 cut(s) 66, 100, 321
HpaII CCGG 5 cut(s) 10, 164, 218, 224, 318
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 185, 335
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 45, 87
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 84, 187, 208, 214, 272
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 1 cut(s) 45
HspAI GCGC 3 cut(s) 66, 100, 321
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
LmnI GCTCC 2 cut(s) 139, 186
LpnPI CCDG 9 cut(s) 23, 128, 176, 177, 188, 231, 237, 313, 331
Lsp1109I GCAGC 5 cut(s) 43, 62, 220, 223, 226
MaeI CTAG 2 cut(s) 35, 116
MaeII ACGT 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 72
MboII GAAGA 2 cut(s) 100, 296
MhlI GDGCHC 2 cut(s) 89, 183
MnlI CCTC 9 cut(s) 21, 113, 116, 151, 169, 233, 256, 305, 312
MroNI GCCGGC 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 5 cut(s) 10, 164, 218, 224, 318
MvnI CGCG 2 cut(s) 50, 68
MwoI GCNNNNNNNGC 6 cut(s) 72, 84, 187, 208, 214, 272
NaeI GCCGGC 1 cut(s) 11
NgoMIV GCCGGC 1 cut(s) 9
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 3 cut(s) 127, 162, 222
NmeAIII GCCGAG 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 11
PkrI GCNGC 7 cut(s) 33, 74, 77, 210, 213, 216, 257
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 154
PspCI CACGTG 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 127, 162, 222
PspPI GGNCC 4 cut(s) 12, 125, 145, 161
RseI CAYNNNNRTG 1 cut(s) 134
SatI GCNGC 7 cut(s) 32, 73, 76, 209, 212, 215, 256
Sau96I GGNCC 4 cut(s) 12, 125, 145, 161
SduI GDGCHC 2 cut(s) 89, 183
SetI ASST 6 cut(s) 36, 144, 156, 180, 192, 297
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SsiI CCGC 6 cut(s) 50, 72, 148, 194, 227, 255
SspMI CTAG 2 cut(s) 35, 116
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 156
TauI GCSGC 2 cut(s) 75, 258
TscAI CASTG 1 cut(s) 273
TseI GCWGC 5 cut(s) 31, 75, 208, 211, 214
TspDTI ATGAA 1 cut(s) 223
TspRI CASTG 1 cut(s) 273
VneI GTGCAC 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XmaJI CCTAGG 1 cut(s) 115
XspI CTAG 2 cut(s) 35, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.