Rmu_sc0013570.1_g000005

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013570.1
OG0016801
Physical Location & Seq
Forward (+)
14050 .. 14439
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013570.1_g000005.1.cds

Sequence Viewer

Length: 390 bp
atgatctgcagcgacgcggcagcgacagcagaagcggaggcgagtcgtcacggtatgatgagccggccctacgagatggtgaggcagctagggtcatgcaacgcggtggttgtgttcagcgcgagcggctgcccaatgtgcaccgtggccgagcgcctcctcttcagcctcggagttggccccaccatcgtggagctggaccgccacgtggaggggccggacataagggaggtgctccgggagctggcggatgggcaggggcagcagcagccggttccggcggtgttcattggagggaagttcttgggcggcgtggaggcactgatggcttgccacatcaacggcaacctcgtccctcttctcaagcactccggcgctctctggctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

129

Amino Acids

13.67

Weight (kDa)

5.46

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 126
AccII CGCG 3 cut(s) 17, 104, 122
AciI CCGC 8 cut(s) 17, 35, 104, 126, 202, 248, 281, 309
AcoI YGGCCR 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 148
AcvI CACGTG 1 cut(s) 208
AfiI CCNNNNNNNGG 3 cut(s) 208, 211, 244
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 3 cut(s) 88, 196, 244
AluI AGCT 3 cut(s) 88, 196, 244
Alw21I GWGCWC 2 cut(s) 143, 237
Alw44I GTGCAC 1 cut(s) 139
AoxI GGCC 4 cut(s) 65, 147, 178, 215
ApaLI GTGCAC 1 cut(s) 139
ApeKI GCWGC 7 cut(s) 9, 20, 85, 129, 262, 265, 268
AspLEI GCGC 3 cut(s) 122, 156, 377
AspS9I GGNCC 4 cut(s) 66, 179, 199, 215
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 143
BbrPI CACGTG 1 cut(s) 208
Bbv12I GWGCWC 2 cut(s) 143, 237
BbvI GCAGC 7 cut(s) 21, 32, 97, 116, 274, 277, 280
BccI CCATC 4 cut(s) 70, 194, 245, 319
BceAI ACGGC 1 cut(s) 358
BcnI CCSGG 1 cut(s) 239
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 7
BfoI RGCGCY 2 cut(s) 157, 378
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 4 cut(s) 66, 179, 199, 215
BmiI GGNNCC 3 cut(s) 181, 216, 276
BmrFI CCNGG 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 144, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 211, 244
Bse118I RCCGGY 2 cut(s) 63, 271
BseDI CCNNGG 2 cut(s) 144, 169
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 208, 211, 244
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 7 cut(s) 21, 32, 97, 116, 274, 277, 280
Bsh1236I CGCG 3 cut(s) 17, 104, 122
BshFI GGCC 4 cut(s) 67, 149, 180, 217
BsiHKAI GWGCWC 2 cut(s) 143, 237
BsiSI CCGG 6 cut(s) 64, 218, 238, 272, 278, 372
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 3 cut(s) 208, 211, 244
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 4 cut(s) 67, 149, 180, 217
Bsp1286I GDGCHC 2 cut(s) 143, 237
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 8 cut(s) 17, 35, 104, 126, 202, 248, 281, 309
BspANI GGCC 4 cut(s) 67, 149, 180, 217
BspFNI CGCG 3 cut(s) 17, 104, 122
BspLI GGNNCC 3 cut(s) 181, 216, 276
BspMAI CTGCAG 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 126
BsrFI RCCGGY 2 cut(s) 63, 271
BssAI RCCGGY 2 cut(s) 63, 271
BssECI CCNNGG 2 cut(s) 144, 169
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 53, 145
Bst6I CTCTTC 2 cut(s) 167, 363
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 4 cut(s) 65, 124, 246, 331
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 3 cut(s) 17, 104, 122
BstH2I RGCGCY 2 cut(s) 157, 378
BstHHI GCGC 3 cut(s) 122, 156, 377
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 7 cut(s) 26, 126, 138, 241, 262, 268, 326
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 143
BstUI CGCG 3 cut(s) 17, 104, 122
BstV1I GCAGC 7 cut(s) 21, 32, 97, 116, 274, 277, 280
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 4 cut(s) 67, 149, 180, 217
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 4 cut(s) 65, 124, 246, 331
CfoI GCGC 3 cut(s) 122, 156, 377
Cfr10I RCCGGY 2 cut(s) 63, 271
Cfr13I GGNCC 4 cut(s) 66, 179, 199, 215
CseI GACGC 1 cut(s) 23
CviAII CATG 1 cut(s) 96
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 167, 363
EarI CTCTTC 2 cut(s) 167, 363
EciI GGCGGA 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 148
Eco72I CACGTG 1 cut(s) 208
FaeI CATG 1 cut(s) 99
FaiI YATR 3 cut(s) 56, 97, 224
FaqI GGGAC 1 cut(s) 338
FatI CATG 1 cut(s) 95
FokI GGATG 1 cut(s) 263
FspBI CTAG 1 cut(s) 89
GlaI GCGC 3 cut(s) 121, 155, 376
HaeII RGCGCY 2 cut(s) 157, 378
HaeIII GGCC 4 cut(s) 67, 149, 180, 217
HapII CCGG 6 cut(s) 64, 218, 238, 272, 278, 372
HgaI GACGC 1 cut(s) 23
HhaI GCGC 3 cut(s) 122, 156, 377
Hin1II CATG 1 cut(s) 99
Hin6I GCGC 3 cut(s) 120, 154, 375
HinP1I GCGC 3 cut(s) 120, 154, 375
HinfI GANTC 1 cut(s) 43
HpaII CCGG 6 cut(s) 64, 218, 238, 272, 278, 372
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 173, 389
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 17
HpyCH4III ACNGT 2 cut(s) 53, 145
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 9, 99, 141
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 126, 138, 241, 262, 268, 326
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 1 cut(s) 99
HspAI GCGC 3 cut(s) 120, 154, 375
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 193, 240, 241
Lsp1109I GCAGC 7 cut(s) 21, 32, 97, 116, 274, 277, 280
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 126
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 154, 350
MhlI GDGCHC 2 cut(s) 143, 237
MlyI GAGTC 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 6 cut(s) 64, 218, 238, 272, 278, 372
MspR9I CCNGG 1 cut(s) 239
MvnI CGCG 3 cut(s) 17, 104, 122
MwoI GCNNNNNNNGC 7 cut(s) 26, 126, 138, 241, 262, 268, 326
NaeI GCCGGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 239
NdeII GATC 1 cut(s) 3
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 3 cut(s) 181, 216, 276
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 47
OliI CACNNNNGTG 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 237
PleI GAGTC 1 cut(s) 51
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
PpsI GAGTC 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 208
PspCI CACGTG 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 181, 216, 276
PspPI GGNCC 4 cut(s) 66, 179, 199, 215
PstI CTGCAG 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 188
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 4 cut(s) 66, 179, 199, 215
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 2 cut(s) 143, 237
SetI ASST 6 cut(s) 90, 198, 210, 234, 246, 351
SfcI CTRYAG 1 cut(s) 7
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SsiI CCGC 8 cut(s) 17, 35, 104, 126, 202, 248, 281, 309
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 53, 145
TaiI ACGT 1 cut(s) 210
TauI GCSGC 3 cut(s) 20, 129, 312
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 7 cut(s) 9, 20, 85, 129, 262, 265, 268
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 277
TspRI CASTG 1 cut(s) 327
VneI GTGCAC 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.