Rw5G009900

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016801
Physical Location & Seq
Forward (+)
10751878 .. 10753050
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009900.1

Sequence Viewer

Length: 405 bp
ATGCAGGTTGCAAAGATGATCAGCAGGGACGCGGCAGCGACAGCAGAGGCGGAGGCGAGTCGTCACGGTATGATGAGCCGGCCCTACGAGATGGTGAGGCAGCTAGGGTCATGCAACGCAGTGGTCGTGTTCAGCGCGAGAGGCTGCCCCATGTGCACCGTGGCGGAGCGCCTCCTCTTCAGCCTCGGAGTTGGCCCCACCATCGTGGAGCTGGACAGCCACGTGGAGGGACCGGACATCAGAGAGGTGCTCCGAGAGCTGGCGGATGGGCAGGGGCAGCAGCAGCCGGTTCCAGCGGTGTTCATCGGAGGGAAGTTCTTGGGAGGCGTGGAGGCGCTGATGGCTTGCCACATCAACGTACTGCTGATCAAGATCAGGACTGTAGGAGTAGTCAGGGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

134

Amino Acids

14.41

Weight (kDa)

6.28

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 41 - 106 3.7e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 32, 137
AciI CCGC 5 cut(s) 32, 50, 164, 263, 296
AcuI CTGAAG 1 cut(s) 163
AcvI CACGTG 1 cut(s) 223
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 226, 259
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 3 cut(s) 103, 211, 259
AluI AGCT 3 cut(s) 103, 211, 259
Alw21I GWGCWC 2 cut(s) 158, 252
Alw44I GTGCAC 1 cut(s) 154
AoxI GGCC 2 cut(s) 80, 193
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 6 cut(s) 35, 100, 144, 277, 280, 283
AspLEI GCGC 3 cut(s) 137, 171, 337
AspS9I GGNCC 3 cut(s) 81, 194, 230
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 158
BbrPI CACGTG 1 cut(s) 223
Bbv12I GWGCWC 2 cut(s) 158, 252
BbvI GCAGC 6 cut(s) 47, 112, 131, 289, 292, 295
BccI CCATC 4 cut(s) 85, 209, 260, 334
BclI TGATCA 2 cut(s) 18, 366
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 2 cut(s) 172, 338
BisI GCNGC 7 cut(s) 33, 36, 101, 145, 278, 281, 284
BlsI GCNGC 7 cut(s) 34, 37, 102, 146, 279, 282, 285
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 3 cut(s) 81, 194, 230
BmiI GGNNCC 3 cut(s) 196, 231, 291
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BsaAI YACGTR 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 159, 184
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 259
Bse118I RCCGGY 2 cut(s) 78, 286
Bse8I GATNNNNATC 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 159, 184
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 2 cut(s) 226, 259
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 6 cut(s) 47, 112, 131, 289, 292, 295
Bsh1236I CGCG 2 cut(s) 32, 137
BshFI GGCC 2 cut(s) 82, 195
BsiHKAI GWGCWC 2 cut(s) 158, 252
BsiSI CCGG 3 cut(s) 79, 233, 287
BslFI GGGAC 2 cut(s) 41, 243
BslI CCNNNNNNNGG 2 cut(s) 226, 259
BsmFI GGGAC 2 cut(s) 41, 243
BsnI GGCC 2 cut(s) 82, 195
Bsp1286I GDGCHC 2 cut(s) 158, 252
Bsp143I GATC 3 cut(s) 18, 366, 372
BspACI CCGC 5 cut(s) 32, 50, 164, 263, 296
BspANI GGCC 2 cut(s) 82, 195
BspFNI CGCG 2 cut(s) 32, 137
BspLI GGNNCC 3 cut(s) 196, 231, 291
BsrFI RCCGGY 2 cut(s) 78, 286
BssAI RCCGGY 2 cut(s) 78, 286
BssECI CCNNGG 2 cut(s) 159, 184
BssMI GATC 3 cut(s) 18, 366, 372
Bst4CI ACNGT 3 cut(s) 68, 160, 382
Bst6I CTCTTC 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 3 cut(s) 80, 261, 346
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 2 cut(s) 32, 137
BstH2I RGCGCY 2 cut(s) 172, 338
BstHHI GCGC 3 cut(s) 137, 171, 337
BstKTI GATC 3 cut(s) 21, 369, 375
BstMBI GATC 3 cut(s) 18, 366, 372
BstMWI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 2 cut(s) 32, 137
BstV1I GCAGC 6 cut(s) 47, 112, 131, 289, 292, 295
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuRI GGCC 2 cut(s) 82, 195
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 3 cut(s) 80, 261, 346
CfoI GCGC 3 cut(s) 137, 171, 337
Cfr10I RCCGGY 2 cut(s) 78, 286
Cfr13I GGNCC 3 cut(s) 81, 194, 230
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 359
CviAII CATG 2 cut(s) 111, 151
CviQI GTAC 1 cut(s) 359
DpnI GATC 3 cut(s) 20, 368, 374
DpnII GATC 3 cut(s) 18, 366, 372
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 3 cut(s) 65, 179, 278
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 163
Eco72I CACGTG 1 cut(s) 223
FaeI CATG 2 cut(s) 114, 154
FaiI YATR 3 cut(s) 71, 112, 152
FaqI GGGAC 2 cut(s) 41, 243
FatI CATG 2 cut(s) 110, 150
FbaI TGATCA 2 cut(s) 18, 366
Fnu4HI GCNGC 7 cut(s) 33, 36, 101, 145, 278, 281, 284
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 7 cut(s) 33, 36, 101, 145, 278, 281, 284
FspBI CTAG 1 cut(s) 104
GlaI GCGC 3 cut(s) 136, 170, 336
GluI GCNGC 7 cut(s) 33, 36, 101, 145, 278, 281, 284
HaeII RGCGCY 2 cut(s) 172, 338
HaeIII GGCC 2 cut(s) 82, 195
HapII CCGG 3 cut(s) 79, 233, 287
HgaI GACGC 1 cut(s) 38
HhaI GCGC 3 cut(s) 137, 171, 337
Hin1II CATG 2 cut(s) 114, 154
Hin6I GCGC 3 cut(s) 135, 169, 335
HinP1I GCGC 3 cut(s) 135, 169, 335
HinfI GANTC 1 cut(s) 58
HpaII CCGG 3 cut(s) 79, 233, 287
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 4 cut(s) 188, 242, 254, 308
Hpy188III TCNNGA 2 cut(s) 370, 376
Hpy8I GTNNAC 1 cut(s) 156
HpyCH4III ACNGT 3 cut(s) 68, 160, 382
HpyCH4IV ACGT 2 cut(s) 222, 357
HpyCH4V TGCA 4 cut(s) 4, 11, 114, 156
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
HpySE526I ACGT 2 cut(s) 222, 357
Hsp92II CATG 2 cut(s) 114, 154
HspAI GCGC 3 cut(s) 135, 169, 335
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Ksp22I TGATCA 2 cut(s) 18, 366
Kzo9I GATC 3 cut(s) 18, 366, 372
LmnI GCTCC 3 cut(s) 166, 208, 255
Lsp1109I GCAGC 6 cut(s) 47, 112, 131, 289, 292, 295
MaeI CTAG 1 cut(s) 104
MaeII ACGT 2 cut(s) 222, 357
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 20, 368, 374
MboI GATC 3 cut(s) 18, 366, 372
MboII GAAGA 1 cut(s) 169
MhlI GDGCHC 2 cut(s) 158, 252
MlyI GAGTC 1 cut(s) 67
MroNI GCCGGC 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 3 cut(s) 79, 233, 287
MvnI CGCG 2 cut(s) 32, 137
MwoI GCNNNNNNNGC 7 cut(s) 41, 141, 153, 256, 277, 283, 341
NaeI GCCGGC 1 cut(s) 80
NdeII GATC 3 cut(s) 18, 366, 372
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 2 cut(s) 114, 154
NlaIV GGNNCC 3 cut(s) 196, 231, 291
NmuCI GTSAC 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 80
PkrI GCNGC 7 cut(s) 34, 37, 102, 146, 279, 282, 285
PleI GAGTC 1 cut(s) 66
PmaCI CACGTG 1 cut(s) 223
PmlI CACGTG 1 cut(s) 223
PpsI GAGTC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 223
PspCI CACGTG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 196, 231, 291
PspPI GGNCC 3 cut(s) 81, 194, 230
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 203
SatI GCNGC 7 cut(s) 33, 36, 101, 145, 278, 281, 284
Sau3AI GATC 3 cut(s) 18, 366, 372
Sau96I GGNCC 3 cut(s) 81, 194, 230
SchI GAGTC 1 cut(s) 67
SduI GDGCHC 2 cut(s) 158, 252
SetI ASST 7 cut(s) 9, 105, 213, 225, 249, 261, 360
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 203
SsiI CCGC 5 cut(s) 32, 50, 164, 263, 296
SspMI CTAG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 68, 160, 382
TaiI ACGT 2 cut(s) 225, 360
TauI GCSGC 1 cut(s) 35
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 6 cut(s) 35, 100, 144, 277, 280, 283
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 292
TspRI CASTG 1 cut(s) 126
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 2 cut(s) 157, 208
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.