Prupe.4G083900_v2.0.a1

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016801
Physical Location & Seq
Forward (+)
4105415 .. 4106707
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G083900.1

Sequence Viewer

Length: 429 bp
ATGCAGGTGGCAAAGAAATCAGCAGGGATTCCAATGGACCCCATCATCATGGCTGCTGAGTCAGGAGCGGGGAAACTGGCGGAGAACAATATCATGGGGGCGATGATGAGCCCTTATGAGATGGTGAGGCAGCTGGGGGCGTGCAACGCGGTGGTGGTGTTCAGCATGAGCGGCTGCTGCATGTGCACCGTGGCCAAACGCCTCCTCTTTAGCCTCGGGGTCGGCCCCTCCATCATCGAGCTGGACGAGCACGTGGCGGGGGCCGACATCCAGGCCGTTCTGTACGAGCTGGCGGTAGACGGCCAGCAGCCGATACCGGCCGTGTTCGTGGGAGGGAAGTTCTTAGGTGGCGTGCAAGCGCTCATGGGTTGCCACATCAATGGCACCCTCGTCCCTCTCCTCAAAGACTCCGGTGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

143

Amino Acids

14.74

Weight (kDa)

5.19

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AccBSI CCGCTC 2 cut(s) 68, 171
AccI GTMKAC 1 cut(s) 297
AccII CGCG 1 cut(s) 149
AciI CCGC 6 cut(s) 68, 80, 149, 171, 257, 293
AcoI YGGCCR 3 cut(s) 192, 301, 318
AcvI CACGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 284
AfeI AGCGCT 1 cut(s) 360
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 3 cut(s) 133, 241, 289
AluI AGCT 3 cut(s) 133, 241, 289
Alw21I GWGCWC 3 cut(s) 188, 252, 418
Alw44I GTGCAC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 360
AoxI GGCC 6 cut(s) 192, 223, 261, 273, 301, 318
ApaLI GTGCAC 1 cut(s) 184
ApeKI GCWGC 5 cut(s) 53, 130, 174, 177, 307
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 3 cut(s) 37, 224, 261
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 253
Bbv12I GWGCWC 3 cut(s) 188, 252, 418
BbvI GCAGC 5 cut(s) 40, 142, 161, 164, 319
BccI CCATC 3 cut(s) 50, 115, 239
BceAI ACGGC 3 cut(s) 260, 305, 316
BciT130I CCWGG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 6 cut(s) 54, 131, 172, 175, 178, 308
BlsI GCNGC 6 cut(s) 55, 132, 173, 176, 179, 309
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 3 cut(s) 37, 224, 261
BmiI GGNNCC 4 cut(s) 39, 226, 262, 385
BmrFI CCNGG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 189, 214
BsaWI WCCGGW 1 cut(s) 410
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 189, 214
BseGI GGATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 81
BseRI GAGGAG 2 cut(s) 194, 389
BseSI GKGCMC 1 cut(s) 188
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 5 cut(s) 40, 142, 161, 164, 319
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 6 cut(s) 194, 225, 263, 275, 303, 320
BshNI GGYRCC 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 3 cut(s) 188, 252, 418
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 317, 411
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 6 cut(s) 194, 225, 263, 275, 303, 320
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 4 cut(s) 113, 188, 252, 418
BspACI CCGC 6 cut(s) 68, 80, 149, 171, 257, 293
BspANI GGCC 6 cut(s) 194, 225, 263, 275, 303, 320
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 4 cut(s) 39, 226, 262, 385
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 2 cut(s) 68, 171
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 189, 214
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 190
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 5 cut(s) 142, 291, 305, 353, 357
BstDEI CTNAG 2 cut(s) 57, 343
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 5 cut(s) 146, 171, 177, 183, 247
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 188
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 5 cut(s) 40, 142, 161, 164, 319
BstXI CCANNNNNNTGG 2 cut(s) 49, 380
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 6 cut(s) 194, 225, 263, 275, 303, 320
BtgI CCRYGG 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 5 cut(s) 142, 291, 305, 353, 357
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 37, 224, 261
Csp6I GTAC 1 cut(s) 283
CviAII CATG 5 cut(s) 49, 94, 166, 181, 364
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 57, 343
EaeI YGGCCR 3 cut(s) 192, 301, 318
EagI CGGCCG 1 cut(s) 318
EciI GGCGGA 1 cut(s) 95
EclXI CGGCCG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 360
Eco52I CGGCCG 1 cut(s) 318
Eco72I CACGTG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 5 cut(s) 52, 97, 169, 184, 367
FaiI YATR 6 cut(s) 50, 95, 117, 167, 182, 365
FaqI GGGAC 1 cut(s) 377
FatI CATG 5 cut(s) 48, 93, 165, 180, 363
FauI CCCGC 2 cut(s) 61, 250
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 6 cut(s) 54, 131, 172, 175, 178, 308
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 6 cut(s) 54, 131, 172, 175, 178, 308
GlaI GCGC 1 cut(s) 360
GluI GCNGC 6 cut(s) 54, 131, 172, 175, 178, 308
GsaI CCCAGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 6 cut(s) 194, 225, 263, 275, 303, 320
HapII CCGG 2 cut(s) 317, 411
HhaI GCGC 1 cut(s) 361
Hin1II CATG 5 cut(s) 52, 97, 169, 184, 367
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 3 cut(s) 28, 59, 407
HpaII CCGG 2 cut(s) 317, 411
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 186, 298
Hpy188I TCNGA 1 cut(s) 428
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 2 cut(s) 186, 298
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 5 cut(s) 4, 144, 180, 186, 355
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 171, 177, 183, 247
HpyF3I CTNAG 2 cut(s) 57, 343
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 5 cut(s) 52, 97, 169, 184, 367
HspAI GCGC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 5 cut(s) 40, 142, 161, 164, 319
MaeII ACGT 1 cut(s) 252
MbiI CCGCTC 2 cut(s) 68, 171
MhlI GDGCHC 4 cut(s) 113, 188, 252, 418
MlsI TGGCCA 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 2 cut(s) 68, 401
MnlI CCTC 9 cut(s) 120, 212, 215, 224, 238, 326, 398, 405, 410
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
MslI CAYNNNNRTG 2 cut(s) 47, 378
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 2 cut(s) 317, 411
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 5 cut(s) 146, 171, 177, 183, 247
NlaIII CATG 5 cut(s) 52, 97, 169, 184, 367
NlaIV GGNNCC 4 cut(s) 39, 226, 262, 385
NspI RCATGY 1 cut(s) 184
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 6 cut(s) 55, 132, 173, 176, 179, 309
PleI GAGTC 2 cut(s) 67, 401
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 2 cut(s) 67, 401
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 270
PspCI CACGTG 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 4 cut(s) 39, 226, 262, 385
PspPI GGNCC 3 cut(s) 37, 224, 261
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 2 cut(s) 47, 378
SatI GCNGC 6 cut(s) 54, 131, 172, 175, 178, 308
Sau96I GGNCC 3 cut(s) 37, 224, 261
SchI GAGTC 2 cut(s) 68, 401
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 4 cut(s) 113, 188, 252, 418
SetI ASST 6 cut(s) 9, 135, 243, 255, 291, 349
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 47, 378
SsiI CCGC 6 cut(s) 68, 80, 149, 171, 257, 293
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 237
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 28
TseI GCWGC 5 cut(s) 53, 130, 174, 177, 307
VneI GTGCAC 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.