FvH4_6g38840

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016801
Physical Location & Seq
Reverse (-)
30737346 .. 30738154
809 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38840.t1

Sequence Viewer

Length: 375 bp
ATGGAGGTTGCGAGGATGATCAGCAACGGCGCGGCGGAGGTGGATGCGAGCCGTTGGCGTTACGAGATGGTGAGTCAGCTGGGATCATGCAACAGGGTGGTGGTGTTCAGCGCGAGCGGCTGCCCCATGTGCACCGTGGCGGAGCACCTCCTCTTCAGCCTCGGAGTCGGCCCCACCATCGTGGTGCTGGACCGCCATGTGGAGGGACCGGCCATTAGGGAAGTGCTCCGCGAGCTAGCAGACGAGCAGCAGCCGGAGGTTCCGGCGGTGTTTATTGGAGGCAAGTTCGTGGGAGGCGTGGAGGCGCTCATGGCTTGCCACATCAACGGGAACCTCGTTCCTCTGCTCAAGCACTCCGGCGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

125

Amino Acids

13.33

Weight (kDa)

5.48

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 33 - 97 2.4e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 117
AccII CGCG 3 cut(s) 32, 113, 231
AciI CCGC 7 cut(s) 32, 35, 117, 140, 193, 229, 266
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 199, 202
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 2 cut(s) 79, 235
AluI AGCT 2 cut(s) 79, 235
Alw21I GWGCWC 3 cut(s) 134, 147, 228
Alw44I GTGCAC 1 cut(s) 130
AlwI GGATC 1 cut(s) 91
AoxI GGCC 2 cut(s) 169, 210
ApaLI GTGCAC 1 cut(s) 130
ApeKI GCWGC 3 cut(s) 120, 247, 250
AspLEI GCGC 4 cut(s) 32, 113, 307, 362
AspS9I GGNCC 3 cut(s) 170, 190, 206
AsuHPI GGTGA 1 cut(s) 82
AsuNHI GCTAGC 1 cut(s) 235
AvaII GGWCC 2 cut(s) 190, 206
BaeGI GKGCMC 1 cut(s) 134
Bbv12I GWGCWC 3 cut(s) 134, 147, 228
BbvI GCAGC 3 cut(s) 107, 259, 262
BccI CCATC 2 cut(s) 61, 185
BceAI ACGGC 2 cut(s) 36, 43
BclI TGATCA 1 cut(s) 18
BfaI CTAG 1 cut(s) 236
BfoI RGCGCY 2 cut(s) 308, 363
BisI GCNGC 5 cut(s) 33, 118, 121, 248, 251
BlsI GCNGC 5 cut(s) 34, 119, 122, 249, 252
Bme18I GGWCC 2 cut(s) 190, 206
BmgT120I GGNCC 3 cut(s) 170, 190, 206
BmiI GGNNCC 4 cut(s) 172, 207, 261, 332
BmsI GCATC 1 cut(s) 34
BmtI GCTAGC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 135, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 202
Bse118I RCCGGY 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 135, 160
BseGI GGATG 2 cut(s) 21, 49
BseLI CCNNNNNNNGG 2 cut(s) 199, 202
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 3 cut(s) 107, 259, 262
BseYI CCCAGC 1 cut(s) 79
Bsh1236I CGCG 3 cut(s) 32, 113, 231
BshFI GGCC 2 cut(s) 171, 212
BsiHKAI GWGCWC 3 cut(s) 134, 147, 228
BsiSI CCGG 4 cut(s) 209, 254, 263, 357
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 199, 202
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 171, 212
Bsp1286I GDGCHC 3 cut(s) 134, 147, 228
Bsp143I GATC 2 cut(s) 18, 83
BspACI CCGC 7 cut(s) 32, 35, 117, 140, 193, 229, 266
BspANI GGCC 2 cut(s) 171, 212
BspFNI CGCG 3 cut(s) 32, 113, 231
BspLI GGNNCC 4 cut(s) 172, 207, 261, 332
BspOI GCTAGC 1 cut(s) 239
BspPI GGATC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 135, 160
BssMI GATC 2 cut(s) 18, 83
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 158
BstC8I GCNNGC 5 cut(s) 49, 115, 233, 237, 316
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 21, 49
BstFNI CGCG 3 cut(s) 32, 113, 231
BstH2I RGCGCY 2 cut(s) 308, 363
BstHHI GCGC 4 cut(s) 32, 113, 307, 362
BstKTI GATC 2 cut(s) 21, 86
BstMBI GATC 2 cut(s) 18, 83
BstMWI GCNNNNNNNGC 4 cut(s) 117, 129, 232, 311
BstSLI GKGCMC 1 cut(s) 134
BstUI CGCG 3 cut(s) 32, 113, 231
BstV1I GCAGC 3 cut(s) 107, 259, 262
BstXI CCANNNNNNTGG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 171, 212
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 21, 49
Cac8I GCNNGC 5 cut(s) 49, 115, 233, 237, 316
CfoI GCGC 4 cut(s) 32, 113, 307, 362
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 3 cut(s) 170, 190, 206
CviAII CATG 4 cut(s) 87, 127, 197, 310
DpnI GATC 2 cut(s) 20, 85
DpnII GATC 2 cut(s) 18, 83
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 2 cut(s) 50, 155
Eco47I GGWCC 2 cut(s) 190, 206
Eco57I CTGAAG 1 cut(s) 139
FaeI CATG 4 cut(s) 90, 130, 200, 313
FaiI YATR 4 cut(s) 88, 128, 198, 311
FaqI GGGAC 1 cut(s) 219
FatI CATG 4 cut(s) 86, 126, 196, 309
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 5 cut(s) 33, 118, 121, 248, 251
FokI GGATG 2 cut(s) 28, 56
Fsp4HI GCNGC 5 cut(s) 33, 118, 121, 248, 251
FspBI CTAG 1 cut(s) 236
GlaI GCGC 4 cut(s) 31, 112, 306, 361
GluI GCNGC 5 cut(s) 33, 118, 121, 248, 251
GsaI CCCAGC 1 cut(s) 83
HaeII RGCGCY 2 cut(s) 308, 363
HaeIII GGCC 2 cut(s) 171, 212
HapII CCGG 4 cut(s) 209, 254, 263, 357
HhaI GCGC 4 cut(s) 32, 113, 307, 362
Hin1II CATG 4 cut(s) 90, 130, 200, 313
Hin6I GCGC 4 cut(s) 30, 111, 305, 360
HinP1I GCGC 4 cut(s) 30, 111, 305, 360
HinfI GANTC 2 cut(s) 73, 165
HpaII CCGG 4 cut(s) 209, 254, 263, 357
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 164, 374
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 90, 132
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 129, 232, 311
Hsp92II CATG 4 cut(s) 90, 130, 200, 313
HspAI GCGC 4 cut(s) 30, 111, 305, 360
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 2 cut(s) 18, 83
LmnI GCTCC 2 cut(s) 142, 231
LpnPI CCDG 8 cut(s) 65, 79, 173, 222, 267, 276, 352, 370
Lsp1109I GCAGC 3 cut(s) 107, 259, 262
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 20, 85
MbiI CCGCTC 1 cut(s) 117
MboI GATC 2 cut(s) 18, 83
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 3 cut(s) 134, 147, 228
MlyI GAGTC 2 cut(s) 82, 174
MslI CAYNNNNRTG 2 cut(s) 179, 182
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 4 cut(s) 209, 254, 263, 357
MvnI CGCG 3 cut(s) 32, 113, 231
MwoI GCNNNNNNNGC 4 cut(s) 117, 129, 232, 311
NdeII GATC 2 cut(s) 18, 83
NheI GCTAGC 1 cut(s) 235
NlaIII CATG 4 cut(s) 90, 130, 200, 313
NlaIV GGNNCC 4 cut(s) 172, 207, 261, 332
OliI CACNNNNGTG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 333
PkrI GCNGC 5 cut(s) 34, 119, 122, 249, 252
PleI GAGTC 2 cut(s) 81, 173
PpsI GAGTC 2 cut(s) 81, 173
PspFI CCCAGC 1 cut(s) 79
PspN4I GGNNCC 4 cut(s) 172, 207, 261, 332
PspPI GGNCC 3 cut(s) 170, 190, 206
PvuII CAGCTG 1 cut(s) 79
RseI CAYNNNNRTG 2 cut(s) 179, 182
SatI GCNGC 5 cut(s) 33, 118, 121, 248, 251
Sau3AI GATC 2 cut(s) 18, 83
Sau96I GGNCC 3 cut(s) 170, 190, 206
SchI GAGTC 2 cut(s) 82, 174
SduI GDGCHC 3 cut(s) 134, 147, 228
SetI ASST 7 cut(s) 9, 42, 81, 150, 237, 261, 336
SfaNI GCATC 1 cut(s) 34
SinI GGWCC 2 cut(s) 190, 206
SmiMI CAYNNNNRTG 2 cut(s) 179, 182
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SsiI CCGC 7 cut(s) 32, 35, 117, 140, 193, 229, 266
SspMI CTAG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 136
TauI GCSGC 2 cut(s) 35, 120
TseI GCWGC 3 cut(s) 120, 247, 250
VneI GTGCAC 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 190, 206
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 184
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.