MD05G1281000.v1.1

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0016801
Physical Location & Seq
Reverse (-)
41486123 .. 41486545
423 bp
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UTR
Exon/CDS
Intron
MD05G1281000.v1.1.491

Sequence Viewer

Length: 423 bp
ATGCAGGTTGCCAAGAAACCATCAGGGATTTCAATGGACCCAACCAACATGGCTGCTGAGTCGGCAGCCGGGAAGATGCTAGCCGAGACCATGAGCCCGCCCATCGCTTACGAGATGGTGAGGCAGCTAGGGGCATGCAACACGGTGGTGGTGTTCAGCATGAGCGGCTGCTGCATGTGCACCGTGGCCAAGCGCCTCCTCTTTGGCCTCGGCGTCGGCCCTACCATCATCGAGCTGGACGAGCATGTCGCCGGACCGGACATCCAGGCCGTCCTCTACGAGCTTGCAGTGGACGGGCAGCAGCCCATCCCGGCCGTGTTTGTCGGTGGGAAGTTCTTGGGAGGCGTGGAAACGCTAATGGCGTGGCACATCAACGGAACCCTAGTCCCCCTCCTCAAGGACTCCGGCGCTCTCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

141

Amino Acids

14.71

Weight (kDa)

4.97

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 49 - 112 4.9e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccBSI CCGCTC 1 cut(s) 165
AciI CCGC 2 cut(s) 98, 165
AcoI YGGCCR 2 cut(s) 186, 312
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 397
AgsI TTSAA 1 cut(s) 33
AjnI CCWGG 1 cut(s) 264
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 3 cut(s) 127, 235, 283
AluI AGCT 3 cut(s) 127, 235, 283
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 80
Alw44I GTGCAC 1 cut(s) 178
AoxI GGCC 5 cut(s) 186, 205, 217, 267, 312
ApaLI GTGCAC 1 cut(s) 178
ApeKI GCWGC 7 cut(s) 53, 65, 124, 168, 171, 298, 301
AspLEI GCGC 2 cut(s) 195, 410
AspS9I GGNCC 3 cut(s) 37, 218, 254
AsuC2I CCSGG 2 cut(s) 70, 311
AsuHPI GGTGA 1 cut(s) 130
AsuNHI GCTAGC 1 cut(s) 79
AvaII GGWCC 2 cut(s) 37, 254
BaeGI GKGCMC 1 cut(s) 182
BalI TGGCCA 1 cut(s) 188
BanII GRGCYC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 7 cut(s) 40, 77, 136, 155, 158, 310, 313
BccI CCATC 5 cut(s) 28, 109, 110, 233, 314
BceAI ACGGC 2 cut(s) 254, 299
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 2 cut(s) 70, 311
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 3 cut(s) 80, 128, 383
BfoI RGCGCY 2 cut(s) 196, 411
BisI GCNGC 8 cut(s) 54, 66, 125, 166, 169, 172, 299, 302
BlsI GCNGC 8 cut(s) 55, 67, 126, 167, 170, 173, 300, 303
Bme1390I CCNGG 3 cut(s) 70, 266, 311
Bme18I GGWCC 2 cut(s) 37, 254
BmgT120I GGNCC 3 cut(s) 37, 218, 254
BmiI GGNNCC 2 cut(s) 39, 379
BmrFI CCNGG 3 cut(s) 70, 266, 311
BmsI GCATC 1 cut(s) 66
BmtI GCTAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 2 cut(s) 70, 311
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 183, 208
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 183, 208
BseGI GGATG 2 cut(s) 261, 306
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 188, 383
BseSI GKGCMC 1 cut(s) 182
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 7 cut(s) 40, 77, 136, 155, 158, 310, 313
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 5 cut(s) 188, 207, 219, 269, 314
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 5 cut(s) 69, 252, 257, 311, 405
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 5 cut(s) 188, 207, 219, 269, 314
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 98, 182
BspACI CCGC 2 cut(s) 98, 165
BspANI GGCC 5 cut(s) 188, 207, 219, 269, 314
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 39, 379
BspOI GCTAGC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 165
BssECI CCNNGG 2 cut(s) 183, 208
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 145, 184
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 4 cut(s) 81, 98, 136, 285
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 183
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 2 cut(s) 261, 306
BstH2I RGCGCY 2 cut(s) 196, 411
BstHHI GCGC 2 cut(s) 195, 410
BstMAI GTCTC 1 cut(s) 80
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 5 cut(s) 62, 165, 171, 177, 241
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 3 cut(s) 138, 178, 248
BstSCI CCNGG 3 cut(s) 68, 264, 309
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 7 cut(s) 40, 77, 136, 155, 158, 310, 313
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 5 cut(s) 188, 207, 219, 269, 314
BtgI CCRYGG 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 261, 306
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 4 cut(s) 81, 98, 136, 285
CfoI GCGC 2 cut(s) 195, 410
Cfr13I GGNCC 3 cut(s) 37, 218, 254
CpoI CGGWCCG 1 cut(s) 254
CseI GACGC 1 cut(s) 202
CspI CGGWCCG 1 cut(s) 254
CviAII CATG 6 cut(s) 49, 91, 135, 160, 175, 245
DdeI CTNAG 1 cut(s) 57
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 2 cut(s) 186, 312
EagI CGGCCG 1 cut(s) 312
EclXI CGGCCG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 37, 254
Eco52I CGGCCG 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 6 cut(s) 52, 94, 138, 163, 178, 248
FaiI YATR 6 cut(s) 50, 92, 136, 161, 176, 246
FaqI GGGAC 1 cut(s) 371
FatI CATG 6 cut(s) 48, 90, 134, 159, 174, 244
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 8 cut(s) 54, 66, 125, 166, 169, 172, 299, 302
FokI GGATG 2 cut(s) 248, 293
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 8 cut(s) 54, 66, 125, 166, 169, 172, 299, 302
FspBI CTAG 3 cut(s) 80, 128, 383
GlaI GCGC 2 cut(s) 194, 409
GluI GCNGC 8 cut(s) 54, 66, 125, 166, 169, 172, 299, 302
HaeII RGCGCY 2 cut(s) 196, 411
HaeIII GGCC 5 cut(s) 188, 207, 219, 269, 314
HapII CCGG 5 cut(s) 69, 252, 257, 311, 405
HgaI GACGC 1 cut(s) 202
HhaI GCGC 2 cut(s) 195, 410
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 6 cut(s) 52, 94, 138, 163, 178, 248
Hin6I GCGC 2 cut(s) 193, 408
HinP1I GCGC 2 cut(s) 193, 408
HinfI GANTC 2 cut(s) 59, 401
HpaII CCGG 5 cut(s) 69, 252, 257, 311, 405
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 180, 292
Hpy188I TCNGA 1 cut(s) 422
Hpy8I GTNNAC 2 cut(s) 180, 292
Hpy99I CGWCG 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 145, 184
HpyCH4V TGCA 5 cut(s) 4, 138, 174, 180, 287
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 165, 171, 177, 241
HpyF3I CTNAG 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 6 cut(s) 52, 94, 138, 163, 178, 248
HspAI GCGC 2 cut(s) 193, 408
Lsp1109I GCAGC 7 cut(s) 40, 77, 136, 155, 158, 310, 313
LweI GCATC 1 cut(s) 66
MaeI CTAG 3 cut(s) 80, 128, 383
MbiI CCGCTC 1 cut(s) 165
MboII GAAGA 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 98, 182
MlsI TGGCCA 1 cut(s) 188
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 2 cut(s) 68, 395
MnlI CCTC 8 cut(s) 114, 206, 209, 218, 284, 335, 401, 404
Mox20I TGGCCA 1 cut(s) 188
MscI TGGCCA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 5 cut(s) 69, 252, 257, 311, 405
MspR9I CCNGG 3 cut(s) 70, 266, 311
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 5 cut(s) 62, 165, 171, 177, 241
NciI CCSGG 2 cut(s) 70, 311
NheI GCTAGC 1 cut(s) 79
NlaIII CATG 6 cut(s) 52, 94, 138, 163, 178, 248
NlaIV GGNNCC 2 cut(s) 39, 379
NmeAIII GCCGAG 2 cut(s) 109, 189
NspI RCATGY 3 cut(s) 138, 178, 248
OliI CACNNNNGTG 1 cut(s) 146
PaeI GCATGC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 359
PkrI GCNGC 8 cut(s) 55, 67, 126, 167, 170, 173, 300, 303
PleI GAGTC 2 cut(s) 67, 395
PpsI GAGTC 2 cut(s) 67, 395
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 39, 379
PspPI GGNCC 3 cut(s) 37, 218, 254
RseI CAYNNNNRTG 1 cut(s) 146
Rsr2I CGGWCCG 1 cut(s) 254
RsrII CGGWCCG 1 cut(s) 254
SatI GCNGC 8 cut(s) 54, 66, 125, 166, 169, 172, 299, 302
Sau96I GGNCC 3 cut(s) 37, 218, 254
SchI GAGTC 2 cut(s) 68, 395
ScrFI CCNGG 3 cut(s) 70, 266, 311
SduI GDGCHC 2 cut(s) 98, 182
SetI ASST 4 cut(s) 9, 129, 237, 285
SfaNI GCATC 1 cut(s) 66
SinI GGWCC 2 cut(s) 37, 254
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SphI GCATGC 1 cut(s) 138
SsiI CCGC 2 cut(s) 98, 165
SspMI CTAG 3 cut(s) 80, 128, 383
StyD4I CCNGG 3 cut(s) 68, 264, 309
TaaI ACNGT 2 cut(s) 145, 184
TaqI TCGA 1 cut(s) 231
TauI GCSGC 1 cut(s) 168
TscAI CASTG 1 cut(s) 294
TseI GCWGC 7 cut(s) 53, 65, 124, 168, 171, 298, 301
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 294
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 37, 254
XagI CCTNNNNNAGG 1 cut(s) 395
XceI RCATGY 3 cut(s) 138, 178, 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XspI CTAG 3 cut(s) 80, 128, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.