Rorug05G0018900

glutaredoxin-C9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016801
Physical Location & Seq
Reverse (-)
1255581 .. 1268327
12747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0018900.1

Sequence Viewer

Length: 576 bp
ATGACCGACGTCGAGAGCCAGAACCCTAATTTGGACCGTCCGGCGAAGCGCCGAGGTGAAGAACTCGCTGAGGACGACGAGAGCAAAATCCATGAACAGGCGAAGCGCCGAAGGGAAGAATTCGATGAGCGCGCTGCTGGCACTGGGAACAGTACATCGTCGGACAAGGAGCCTCCAATCGTAGATGATGGCTCCCCGTTGGTGCTGCAGCAAAACGAAGATAAGGAGGGTAGCGGTGCCAAAGAAGATAGTGATGTAGAAGAAGTTAGCGCTACAGAAGAAGATTATGATTCACCAGACCCCTATATGTTTGATAATTATGTTCATGAAGATGATGGTAGAATTTATGGATATTGTGCATCTTGTGTTGTCAATGAAGTCTGCAAACGTTGTGGTAACAAGGATGGCTACCCTGCTGGTGTGGATCCAGTCAAATGTCATATTTGTGGTACCAGTTGTGAGTTTACTGAACCCTGTCTATCTTTGGTGCTCGGTGAGTGTTTCGAGAAGGGTTTTATGCTTCCAAGGAGTAGGGAAGGATCAGGTGACTCTGGATATGTTCCTCCAGCCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

191

Amino Acids

21.09

Weight (kDa)

4.35

Isoelectric Point (pI)

73.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016801)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g30690 FvH4_6g38840
malus_domestica MD05G1281000.v1.1
prunus_persica Prupe.4G083900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014521
rosa_laevigata RLG00000032120
rosa_multiflora Rmu_sc0013570.1_g000005
rosa_roxburghii Rroxscaffold_1G00062010
rosa_rugosa Rorug05G0018900
rosa_samantha Rh5AG114100 Rh5BG111100 Rh5CG122700 Rh5DG110000
rosa_wichuraiana Rw5G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 2 cut(s) 236, 449
AccII CGCG 1 cut(s) 132
AciI CCGC 1 cut(s) 234
AclI AACGTT 1 cut(s) 388
AclWI GGATC 3 cut(s) 419, 432, 547
AcsI RAATTY 2 cut(s) 119, 342
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 154, 451
AfeI AGCGCT 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 31, 97
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
Alw21I GWGCWC 1 cut(s) 492
AlwI GGATC 3 cut(s) 419, 432, 547
Aor51HI AGCGCT 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 134, 205, 208
ApoI RAATTY 2 cut(s) 119, 342
Asp718I GGTACC 1 cut(s) 449
AspLEI GCGC 5 cut(s) 51, 108, 132, 134, 272
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 4 cut(s) 68, 285, 506, 557
AvaII GGWCC 1 cut(s) 34
BamHI GGATCC 1 cut(s) 424
BanI GGYRCC 2 cut(s) 236, 449
Bbv12I GWGCWC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 121, 192, 220
BccI CCATC 3 cut(s) 182, 329, 398
BfmI CTRYAG 2 cut(s) 206, 273
BfoI RGCGCY 3 cut(s) 52, 109, 273
BisI GCNGC 3 cut(s) 135, 206, 209
BlsI GCNGC 3 cut(s) 136, 207, 210
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 5 cut(s) 171, 193, 238, 426, 451
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 368
BmuI ACTGGG 1 cut(s) 153
BoxI GACNNNNGTC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 52, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 97
Bse1I ACTGG 3 cut(s) 148, 428, 453
BseDI CCNNGG 2 cut(s) 52, 524
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 2 cut(s) 31, 97
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 3 cut(s) 148, 428, 453
BsePI GCGCGC 1 cut(s) 130
BseXI GCAGC 3 cut(s) 121, 192, 220
Bsh1236I CGCG 1 cut(s) 132
BshNI GGYRCC 2 cut(s) 236, 449
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 31, 97
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 2 cut(s) 424, 539
BspACI CCGC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 5 cut(s) 171, 193, 238, 426, 451
BspMAI CTGCAG 1 cut(s) 210
BspPI GGATC 3 cut(s) 419, 432, 547
BspT107I GGYRCC 2 cut(s) 236, 449
BsrI ACTGG 3 cut(s) 148, 428, 453
BssECI CCNNGG 2 cut(s) 52, 524
BssHII GCGCGC 1 cut(s) 130
BssMI GATC 2 cut(s) 424, 539
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 524
Bst4CI ACNGT 2 cut(s) 38, 152
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 132, 139
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 3 cut(s) 52, 109, 273
BstHHI GCGC 5 cut(s) 51, 108, 132, 134, 272
BstKTI GATC 2 cut(s) 427, 542
BstMBI GATC 2 cut(s) 424, 539
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 8
BstSFI CTRYAG 2 cut(s) 206, 273
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 121, 192, 220
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 132, 139
CciI TCATGA 1 cut(s) 325
CfoI GCGC 5 cut(s) 51, 108, 132, 134, 272
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 153, 450
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 2 cut(s) 92, 326
CviJI RGCY 5 cut(s) 18, 172, 192, 408, 569
CviKI_1 RGCY 5 cut(s) 18, 172, 192, 408, 569
CviQI GTAC 2 cut(s) 153, 450
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 426, 541
DpnII GATC 2 cut(s) 424, 539
Eco130I CCWWGG 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 34
Eco47III AGCGCT 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 524
FaeI CATG 2 cut(s) 95, 329
FatI CATG 2 cut(s) 91, 325
Fnu4HI GCNGC 3 cut(s) 135, 206, 209
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 3 cut(s) 135, 206, 209
GlaI GCGC 5 cut(s) 50, 107, 131, 133, 271
GluI GCNGC 3 cut(s) 135, 206, 209
GsuI CTGGAG 1 cut(s) 549
HaeII RGCGCY 3 cut(s) 52, 109, 273
HapII CCGG 1 cut(s) 41
HhaI GCGC 5 cut(s) 51, 108, 132, 134, 272
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 95, 329
Hin6I GCGC 5 cut(s) 49, 106, 130, 132, 270
HinP1I GCGC 5 cut(s) 49, 106, 130, 132, 270
HinfI GANTC 2 cut(s) 290, 548
HpaII CCGG 1 cut(s) 41
HphI GGTGA 4 cut(s) 68, 285, 506, 557
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 13, 326, 505, 552
Hpy8I GTNNAC 1 cut(s) 465
Hpy99I CGWCG 4 cut(s) 11, 14, 80, 163
HpyAV CCTTC 3 cut(s) 105, 502, 530
HpyCH4III ACNGT 2 cut(s) 38, 152
HpyCH4IV ACGT 2 cut(s) 9, 388
HpyCH4V TGCA 3 cut(s) 208, 359, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 2 cut(s) 9, 388
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 95, 329
HspAI GCGC 5 cut(s) 49, 106, 130, 132, 270
KpnI GGTACC 1 cut(s) 453
Kzo9I GATC 2 cut(s) 424, 539
LmnI GCTCC 2 cut(s) 169, 197
Lsp1109I GCAGC 3 cut(s) 121, 192, 220
LweI GCATC 1 cut(s) 368
MaeII ACGT 2 cut(s) 9, 388
MaeIII GTNAC 2 cut(s) 395, 545
MalI GATC 2 cut(s) 426, 541
MboI GATC 2 cut(s) 424, 539
MboII GAAGA 8 cut(s) 71, 128, 230, 257, 272, 290, 293, 341
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 4 cut(s) 28, 119, 316, 342
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 47, 64, 183, 220, 573
MslI CAYNNNNRTG 2 cut(s) 330, 444
MspI CCGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 2 cut(s) 424, 539
NlaIII CATG 2 cut(s) 95, 329
NlaIV GGNNCC 5 cut(s) 171, 193, 238, 426, 451
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 545
PagI TCATGA 1 cut(s) 325
PauI GCGCGC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 3 cut(s) 136, 207, 210
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
PshAI GACNNNNGTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 388
PspN4I GGNNCC 5 cut(s) 171, 193, 238, 426, 451
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 424
PteI GCGCGC 1 cut(s) 130
RsaI GTAC 2 cut(s) 154, 451
RsaNI GTAC 2 cut(s) 153, 450
RseI CAYNNNNRTG 2 cut(s) 330, 444
SatI GCNGC 3 cut(s) 135, 206, 209
Sau3AI GATC 2 cut(s) 424, 539
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 1 cut(s) 542
SduI GDGCHC 1 cut(s) 492
SetI ASST 4 cut(s) 12, 58, 391, 547
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 2 cut(s) 206, 273
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 2 cut(s) 330, 444
Sse9I AATT 4 cut(s) 28, 119, 316, 342
SsiI CCGC 1 cut(s) 234
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 2 cut(s) 38, 152
TaiI ACGT 2 cut(s) 12, 391
TaqI TCGA 3 cut(s) 12, 123, 504
TaqII GACCGA 1 cut(s) 20
TasI AATT 4 cut(s) 28, 119, 316, 342
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 1 cut(s) 290
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 3 cut(s) 134, 205, 208
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 4 cut(s) 108, 314, 342, 390
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 2 cut(s) 119, 342
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.