FvH4_3g32510

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007726
Physical Location & Seq
Reverse (-)
27766414 .. 27770901
4488 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32510.t3

Sequence Viewer

Length: 1434 bp
ATGGCAACTGAGGAAAAGCACGTGGGTGAGGGGAATCATGAGAATTCAAGCCAAGGGGCACTTGTTGCTTCTCCAGTTCATCAAAAGGTTGAAGAATCAGTAGGAATAATTCAAGTAACACCTCAAGTTCATCCATGGAAGCGACAAAATCTTCACCTGGAGATACCCTCAAGAACAGAAGAAGATGGAGTTCAGGATTTTGTTGCAATAAAGATGCCTCCAACACCAAGTCCCACCCCTAGGAAAGTAAATTTTAATCTTACTCCAGGATCAAGTGATGCAAGAACTAGTGGATCTCCAGGCCCCTCTTCATCCAAAGGAAAATCTTGTAAAAGATCTCTTTTTCCGAAACTAAGCTTCAAGAATCGAAGTTCCTCAGATGTAGAGAAGGCTGTCAACCCAGCTTCAGAAGGTTCACCTGCAGGGCCACCACGGGAAAAGCCTTCCATATCAAGGTCAATGTCCCTTACCAAGCTATTCACTCCGCGGATAAAGAGAACATCATCTCTACCTGTAACTCCTATTGCATCTTCACTCCCAGACTCTACACATGGTGGAAGTGTTGGTGGCTCTCTAAATTCAGCAAGAAAAGGAGCTCGACAGATAGCTCGCTCACTTTCAGTTCCAATCAACCCTAAAGAGAAGGTTGCCTTAAGGAGGATGGATTCCTTTTTCCGTGTAATTCCTTCCACTCCTCGGGTGAAGGAAGGGGATGCAATATTGATTACTTCCCCAAAAGCGGATGCTGGAAATGATGATGACAATGGTGAAGACATATCTGAAGAAGAGGCTGTCTGCAGAATTTGTCTAGTTGAACTTTGTGAAGGGGGTGAGACCCTCAAAATGGAATGCAGTTGCAAAGGTGAACTTGCTCTGGCCCATCAGGAATGTGCTGTAAAATGGTTTAGTATCAAAGGTAACAAGACCTGTGATGTATGCAAGCAAGAGGTTCTAAACCTGCCTGTCACTCTATTACGAATACAAAGTGTTCGAGCTCGAAATACTGGAAGTACATTTCTGCAGGAAGATGCTAACGGTTACAGGGTTTGGCAGGAAGTGCCTGTGCTTGTCATTGTTAGCATGCTTGCCTACTTTTGTTTTCTTGAACAGCTACTGGTTGAGAAAATGGGTACGGGTGCAATTGCTGTCTCTCTTCCATTTTCTTGTGTACTGGGACTCCTTTCATCAATGACCTCATCAACCATGGTCAAAAGAAGATTTGTCTGGGTCTATGCGTCGGTTCAGTTTGCTCTGGTGGTTTTATTTGCACATATATTTTACTCGTTGGTCCGGGTGCAAGCAGTTCTTTGCATTCTCCTGGCAACATTTGCCGGACTGGGTGTTGCGATGAGTGGGAGTTCCATAATTGTCGAGGTCTTGAGATGGAGAAGAAGATGGCAGAGTCGCTCCGAGCAAAGCCATAGCCAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

478

Amino Acids

51.95

Weight (kDa)

9.16

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 266 - 313 2.7e-11 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 427
Acc36I ACCTGC 2 cut(s) 427, 966
AccII CGCG 1 cut(s) 487
AciI CCGC 3 cut(s) 485, 487, 740
AclWI GGATC 2 cut(s) 277, 301
AcsI RAATTY 4 cut(s) 43, 250, 577, 801
AcuI CTGAAG 2 cut(s) 390, 801
AcvI CACGTG 1 cut(s) 22
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 3 cut(s) 1012, 1132, 1170
AfiI CCNNNNNNNGG 6 cut(s) 240, 453, 657, 696, 739, 844
AflII CTTAAG 1 cut(s) 652
AgsI TTSAA 6 cut(s) 48, 92, 113, 361, 815, 1106
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 4 cut(s) 156, 265, 298, 1317
AleI CACNNNNGTG 1 cut(s) 24
AluBI AGCT 7 cut(s) 357, 404, 475, 596, 608, 995, 1111
AluI AGCT 7 cut(s) 357, 404, 475, 596, 608, 995, 1111
Alw21I GWGCWC 2 cut(s) 598, 997
Alw26I GTCTC 2 cut(s) 827, 1153
AlwI GGATC 2 cut(s) 277, 301
AlwNI CAGNNNCTG 1 cut(s) 1114
Ama87I CYCGRG 1 cut(s) 696
AoxI GGCC 3 cut(s) 301, 425, 876
ApoI RAATTY 4 cut(s) 43, 250, 577, 801
AspA2I CCTAGG 1 cut(s) 239
AspS9I GGNCC 4 cut(s) 302, 425, 877, 1288
AsuC2I CCSGG 1 cut(s) 1292
AsuHPI GGTGA 7 cut(s) 38, 146, 408, 712, 779, 842, 875
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 1 cut(s) 1288
AvrII CCTAGG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 598, 997
BbrPI CACGTG 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 2 cut(s) 598, 997
BccI CCATC 5 cut(s) 179, 655, 888, 1377, 1389
BciT130I CCWGG 4 cut(s) 158, 267, 300, 1319
BcnI CCSGG 1 cut(s) 1292
BcoDI GTCTC 2 cut(s) 827, 1153
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 3 cut(s) 240, 288, 809
BfmI CTRYAG 3 cut(s) 420, 796, 1019
BfrI CTTAAG 1 cut(s) 652
BfuAI ACCTGC 2 cut(s) 427, 966
BglII AGATCT 1 cut(s) 335
BlnI CCTAGG 1 cut(s) 239
Bme1390I CCNGG 5 cut(s) 158, 267, 300, 1292, 1319
Bme18I GGWCC 1 cut(s) 1288
BmeT110I CYCGRG 1 cut(s) 696
BmgT120I GGNCC 4 cut(s) 302, 425, 877, 1288
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 5 cut(s) 158, 267, 300, 1292, 1319
BmrI ACTGGG 2 cut(s) 1181, 1346
BmsI GCATC 6 cut(s) 204, 268, 536, 703, 733, 1018
BmuI ACTGGG 2 cut(s) 1181, 1346
BpiI GAAGAC 1 cut(s) 777
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpmI CTGGAG 4 cut(s) 57, 179, 249, 282
BpuEI CTTGAG 3 cut(s) 108, 154, 1399
BpuMI CCSGG 1 cut(s) 1292
BsaAI YACGTR 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 7 cut(s) 52, 134, 239, 431, 485, 695, 1203
BsaXI ACNNNNNCTCC 2 cut(s) 1161, 1191
Bsc4I CCNNNNNNNGG 6 cut(s) 240, 453, 657, 696, 739, 844
Bse1I ACTGG 5 cut(s) 74, 1009, 1119, 1176, 1341
BseBI CCWGG 4 cut(s) 158, 267, 300, 1319
BseDI CCNNGG 7 cut(s) 52, 134, 239, 431, 485, 695, 1203
BseGI GGATG 5 cut(s) 130, 311, 666, 718, 748
BseLI CCNNNNNNNGG 6 cut(s) 240, 453, 657, 696, 739, 844
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 5 cut(s) 74, 1009, 1119, 1176, 1341
BseRI GAGGAG 1 cut(s) 684
BseSI GKGCMC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 487
BshFI GGCC 3 cut(s) 303, 427, 878
BsiHKAI GWGCWC 2 cut(s) 598, 997
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 2 cut(s) 1291, 1332
BslFI GGGAC 3 cut(s) 216, 448, 1188
BslI CCNNNNNNNGG 6 cut(s) 240, 453, 657, 696, 739, 844
BsmAI GTCTC 2 cut(s) 827, 1153
BsmFI GGGAC 3 cut(s) 216, 448, 1188
BsmI GAATGC 2 cut(s) 854, 1311
BsnI GGCC 3 cut(s) 303, 427, 878
Bso31I GGTCTC 1 cut(s) 827
BsoBI CYCGRG 1 cut(s) 696
Bsp1286I GDGCHC 3 cut(s) 61, 598, 997
Bsp143I GATC 3 cut(s) 269, 293, 335
Bsp19I CCATGG 2 cut(s) 134, 1203
BspACI CCGC 3 cut(s) 485, 487, 740
BspANI GGCC 3 cut(s) 303, 427, 878
BspCNI CTCAG 1 cut(s) 389
BspFNI CGCG 1 cut(s) 487
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 3 cut(s) 424, 800, 1023
BspMI ACCTGC 2 cut(s) 427, 966
BspPI GGATC 2 cut(s) 277, 301
BspTI CTTAAG 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 827
BsrI ACTGG 5 cut(s) 74, 1009, 1119, 1176, 1341
BssECI CCNNGG 7 cut(s) 52, 134, 239, 431, 485, 695, 1203
BssMI GATC 3 cut(s) 269, 293, 335
BssT1I CCWWGG 4 cut(s) 52, 134, 239, 1203
Bst2UI CCWGG 4 cut(s) 158, 267, 300, 1319
Bst4CI ACNGT 1 cut(s) 1037
Bst6I CTCTTC 3 cut(s) 313, 780, 1158
BstAFI CTTAAG 1 cut(s) 652
BstAPI GCANNNNNTGC 3 cut(s) 65, 1057, 1328
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 5 cut(s) 610, 941, 1082, 1086, 1299
BstDEI CTNAG 3 cut(s) 9, 353, 376
BstDSI CCRYGG 4 cut(s) 134, 431, 485, 1203
BstENI CCTNNNNNAGG 1 cut(s) 655
BstF5I GGATG 5 cut(s) 130, 311, 666, 718, 748
BstFNI CGCG 1 cut(s) 487
BstKTI GATC 3 cut(s) 272, 296, 338
BstMAI GTCTC 2 cut(s) 827, 1153
BstMBI GATC 3 cut(s) 269, 293, 335
BstMWI GCNNNNNNNGC 3 cut(s) 65, 1057, 1328
BstNI CCWGG 4 cut(s) 158, 267, 300, 1319
BstNSI RCATGY 1 cut(s) 1084
BstSCI CCNGG 5 cut(s) 156, 265, 298, 1290, 1317
BstSFI CTRYAG 3 cut(s) 420, 796, 1019
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 1 cut(s) 487
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 2 cut(s) 293, 335
BstYI RGATCY 2 cut(s) 293, 335
BsuRI GGCC 3 cut(s) 303, 427, 878
BtgI CCRYGG 4 cut(s) 134, 431, 485, 1203
BtgZI GCGATG 1 cut(s) 1361
BtsCI GGATG 5 cut(s) 130, 311, 666, 718, 748
BveI ACCTGC 2 cut(s) 427, 966
Cac8I GCNNGC 5 cut(s) 610, 941, 1082, 1086, 1299
CaiI CAGNNNCTG 1 cut(s) 1114
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 4 cut(s) 302, 425, 877, 1288
Cfr42I CCGCGG 1 cut(s) 488
CseI GACGC 1 cut(s) 1224
Csp6I GTAC 3 cut(s) 1011, 1131, 1169
CviAII CATG 5 cut(s) 38, 135, 551, 1081, 1204
CviQI GTAC 3 cut(s) 1011, 1131, 1169
DdeI CTNAG 3 cut(s) 9, 353, 376
DpnI GATC 3 cut(s) 271, 295, 337
DpnII GATC 3 cut(s) 269, 293, 335
DraIII CACNNNGTG 1 cut(s) 554
Eam1104I CTCTTC 3 cut(s) 313, 780, 1158
EarI CTCTTC 3 cut(s) 313, 780, 1158
Ecl136II GAGCTC 2 cut(s) 596, 995
Eco130I CCWWGG 4 cut(s) 52, 134, 239, 1203
Eco24I GRGCYC 2 cut(s) 598, 997
Eco31I GGTCTC 1 cut(s) 827
Eco47I GGWCC 1 cut(s) 1288
Eco53kI GAGCTC 2 cut(s) 596, 995
Eco57I CTGAAG 2 cut(s) 390, 801
Eco72I CACGTG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 696
EcoICRI GAGCTC 2 cut(s) 596, 995
EcoNI CCTNNNNNAGG 1 cut(s) 655
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 4 cut(s) 156, 265, 298, 1317
EcoT14I CCWWGG 4 cut(s) 52, 134, 239, 1203
EcoT38I GRGCYC 2 cut(s) 598, 997
ErhI CCWWGG 4 cut(s) 52, 134, 239, 1203
FaeI CATG 5 cut(s) 41, 138, 554, 1084, 1207
FalI AAGNNNNNCTT 8 cut(s) 45, 77, 635, 667, 852, 884, 1290, 1322
FaqI GGGAC 3 cut(s) 216, 448, 1188
FatI CATG 5 cut(s) 37, 134, 550, 1080, 1203
FokI GGATG 5 cut(s) 117, 298, 673, 725, 755
FriOI GRGCYC 2 cut(s) 598, 997
FspBI CTAG 3 cut(s) 240, 288, 809
GsaI CCCAGC 1 cut(s) 404
GsuI CTGGAG 4 cut(s) 57, 179, 249, 282
HaeIII GGCC 3 cut(s) 303, 427, 878
HapII CCGG 2 cut(s) 1291, 1332
HgaI GACGC 1 cut(s) 1224
Hin1II CATG 5 cut(s) 41, 138, 554, 1084, 1207
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 7 cut(s) 34, 95, 364, 542, 665, 1176, 1402
HpaII CCGG 2 cut(s) 1291, 1332
HphI GGTGA 7 cut(s) 38, 146, 408, 712, 779, 842, 875
Hpy166II GTNNAC 4 cut(s) 397, 416, 866, 1169
Hpy188I TCNGA 5 cut(s) 348, 379, 409, 781, 1411
Hpy188III TCNNGA 7 cut(s) 38, 171, 194, 361, 884, 1103, 1378
Hpy8I GTNNAC 4 cut(s) 397, 416, 866, 1169
Hpy99I CGWCG 1 cut(s) 1240
HpyAV CCTTC 8 cut(s) 382, 404, 453, 637, 696, 697, 701, 818
HpyCH4III ACNGT 1 cut(s) 1037
HpyCH4IV ACGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 1057, 1328
HpyF3I CTNAG 3 cut(s) 9, 353, 376
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 5 cut(s) 41, 138, 554, 1084, 1207
KspI CCGCGG 1 cut(s) 488
Kzo9I GATC 3 cut(s) 269, 293, 335
LmnI GCTCC 2 cut(s) 593, 1412
LweI GCATC 6 cut(s) 204, 268, 536, 703, 733, 1018
MaeI CTAG 3 cut(s) 240, 288, 809
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 5 cut(s) 115, 514, 917, 964, 1037
MalI GATC 3 cut(s) 271, 295, 337
MboI GATC 3 cut(s) 269, 293, 335
MfeI CAATTG 1 cut(s) 1140
MflI RGATCY 2 cut(s) 293, 335
MhlI GDGCHC 3 cut(s) 61, 598, 997
MluCI AATT 8 cut(s) 43, 108, 250, 577, 681, 801, 1140, 1365
MlyI GAGTC 3 cut(s) 536, 1170, 1411
MmeI TCCRAC 1 cut(s) 245
MseI TTAA 2 cut(s) 255, 653
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 487
MspCI CTTAAG 1 cut(s) 652
MspI CCGG 2 cut(s) 1291, 1332
MspR9I CCNGG 5 cut(s) 158, 267, 300, 1292, 1319
MunI CAATTG 1 cut(s) 1140
Mva1269I GAATGC 2 cut(s) 854, 1311
MvaI CCWGG 4 cut(s) 158, 267, 300, 1319
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 3 cut(s) 65, 1057, 1328
NciI CCSGG 1 cut(s) 1292
NcoI CCATGG 2 cut(s) 134, 1203
NdeII GATC 3 cut(s) 269, 293, 335
NlaIII CATG 5 cut(s) 41, 138, 554, 1084, 1207
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 964
NspI RCATGY 1 cut(s) 1084
OliI CACNNNNGTG 1 cut(s) 24
PaeI GCATGC 1 cut(s) 1084
PagI TCATGA 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 427
PctI GAATGC 2 cut(s) 854, 1311
PfeI GAWTC 4 cut(s) 34, 95, 364, 665
PfoI TCCNGGA 1 cut(s) 265
PleI GAGTC 3 cut(s) 536, 1170, 1410
PmaCI CACGTG 1 cut(s) 22
PmlI CACGTG 1 cut(s) 22
PpsI GAGTC 3 cut(s) 536, 1170, 1410
Ppu21I YACGTR 1 cut(s) 22
Psp124BI GAGCTC 2 cut(s) 598, 997
Psp6I CCWGG 4 cut(s) 156, 265, 298, 1317
PspCI CACGTG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 4 cut(s) 156, 265, 298, 1317
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 4 cut(s) 302, 425, 877, 1288
PstI CTGCAG 3 cut(s) 424, 800, 1023
PstNI CAGNNNCTG 1 cut(s) 1114
PsuI RGATCY 2 cut(s) 293, 335
RsaI GTAC 3 cut(s) 1012, 1132, 1170
RsaNI GTAC 3 cut(s) 1011, 1131, 1169
RseI CAYNNNNRTG 1 cut(s) 24
SacI GAGCTC 2 cut(s) 598, 997
SacII CCGCGG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 255, 653
Sau3AI GATC 3 cut(s) 269, 293, 335
Sau96I GGNCC 4 cut(s) 302, 425, 877, 1288
SbfI CCTGCAGG 1 cut(s) 424
SchI GAGTC 3 cut(s) 536, 1170, 1411
ScrFI CCNGG 5 cut(s) 158, 267, 300, 1292, 1319
SdaI CCTGCAGG 1 cut(s) 424
SduI GDGCHC 3 cut(s) 61, 598, 997
SfaNI GCATC 6 cut(s) 204, 268, 536, 703, 733, 1018
SfcI CTRYAG 3 cut(s) 420, 796, 1019
Sfr303I CCGCGG 1 cut(s) 488
SgrBI CCGCGG 1 cut(s) 488
SinI GGWCC 1 cut(s) 1288
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 4 cut(s) 123, 169, 652, 1378
SmoI CTYRAG 4 cut(s) 123, 169, 652, 1378
SpeI ACTAGT 1 cut(s) 287
SphI GCATGC 1 cut(s) 1084
Sse8387I CCTGCAGG 1 cut(s) 424
Sse9I AATT 8 cut(s) 43, 108, 250, 577, 681, 801, 1140, 1365
SsiI CCGC 3 cut(s) 485, 487, 740
SspI AATATT 1 cut(s) 720
SspMI CTAG 3 cut(s) 240, 288, 809
SstI GAGCTC 2 cut(s) 598, 997
StyD4I CCNGG 5 cut(s) 156, 265, 298, 1290, 1317
StyI CCWWGG 4 cut(s) 52, 134, 239, 1203
TaaI ACNGT 1 cut(s) 1037
TaiI ACGT 1 cut(s) 24
TaqI TCGA 5 cut(s) 367, 598, 991, 997, 1371
TasI AATT 8 cut(s) 43, 108, 250, 577, 681, 801, 1140, 1365
TatI WGTACW 2 cut(s) 1010, 1168
TfiI GAWTC 4 cut(s) 34, 95, 364, 665
Tru1I TTAA 2 cut(s) 255, 653
Tru9I TTAA 2 cut(s) 255, 653
TseFI GTSAC 1 cut(s) 964
Tsp45I GTSAC 1 cut(s) 964
TspDTI ATGAA 4 cut(s) 68, 119, 300, 1173
TspGWI ACGGA 1 cut(s) 665
Vha464I CTTAAG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 1288
XagI CCTNNNNNAGG 1 cut(s) 655
XapI RAATTY 4 cut(s) 43, 250, 577, 801
XceI RCATGY 1 cut(s) 1084
XmaJI CCTAGG 1 cut(s) 239
XspI CTAG 3 cut(s) 240, 288, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.