Rh5AG387800

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007726
Physical Location & Seq
Reverse (-)
67228228 .. 67234412
6185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG387800.1

Sequence Viewer

Length: 1224 bp
ATGCCTCCAACACCAAGTCCCACCCCTAGGAAAGTAAATTTTAATCTTACTCCAGGTTCAAGTGATGCAAGAATTAGTGGATCTCCAGGCTCCTCTTCATCCAAAGGAAAATCTTGTAAAAGATCTCTTTTTCCGAAACTAAGCTTCAAGAATCGAAGTTCTTCAGATGTCGAGAAGGCTGCTAACCTAAATTCAGAAGGATCACCTGCAGGACCAGCTCGAGAAAAGCCTTCCATATCAAGGTCATTGTCCCTTACAAAGCTGTTCACTCCGCGGATGAAGAGAACATCATCTCTACCTATAACTCCTCTTGCACATTCACGCCCAGAATCTACACATGGTGGAAGTCTTGGCGGCTCTCTAAATTCAGCAACAAAAGGAGCCCATCGACAGATAGCTCGCTCCCTTTCAGTTCCGATCAACCCTAAAGAAAAGGTTACCTTAAGGAGGATGGATTCTTTTTTCCGTGTAATTCCTTCCACTCCCCGAGTGAAGGAAGGAGATGTAATATCGACTACTTCCCCAACAACGGATGCTGGAAAAGATGATGACAATGGTGAAGACATATCTGAAGAAGAGGCTGTCTGCAGAATTTGTCTAGTTGAACTGTGTGAAGGGGGTGAGACCCTCAAAATGGAATGCAGTTGCAAAGGTGAACTTGCTCTGGCCCATCAGGAATGCGCTATAAAATGGTTTAGTATAAAAGGTAACAAGACCTGTGATGTATGCAAGCAAGAGGTTCTAAACCTGCCTGTCACTCTATTACGAATACAAAGTGTCCGAACTCGAAATGCTGGAAGTAGATTTCAGCAGGAAGATGCTAATGGATACAGGGTTTGGCAGGAAGTGCCTGTGCTTGTCATTGTTAGCATGCTTGCCTACTTCTGTTTTCTTGAACAGCTACTGGTTGAGAAAATGGGTACCGGTGCAATTGCCATCTCTCTTCCATTTTCATGTGTGTTGGGACTCCTCACATCAATGACCTCATCAACAATGGTCAAAAGAAGATTTGTGTGGGTCTATGCGTCGGTTCAGTTTGCTCTGGTGGTTCTATTTGCACATATATTCTACTCATTGGTCCGGGTGCAAGCAGTTCTTTGCATTCTCCTGGCAACATTTGCCGGGCTGGGTGTTGCGATGAGTGGGAGTTCCATCATTATCGAGGTCTTAAGATGGAGAAGAAGATGGCAGACTAGCTCCGAGCAAAGCCATAGCCAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

407

Amino Acids

44.42

Weight (kDa)

9.52

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 196 - 243 2.4e-11 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
Acc36I ACCTGC 2 cut(s) 214, 756
Acc65I GGTACC 1 cut(s) 920
AccB1I GGYRCC 1 cut(s) 920
AccII CGCG 1 cut(s) 274
AciI CCGC 3 cut(s) 272, 274, 354
AclWI GGATC 2 cut(s) 88, 208
AcsI RAATTY 4 cut(s) 37, 190, 364, 591
AcuI CTGAAG 2 cut(s) 147, 591
AdeI CACNNNGTG 1 cut(s) 341
AfaI GTAC 1 cut(s) 922
AfiI CCNNNNNNNGG 6 cut(s) 27, 240, 447, 493, 529, 634
AflII CTTAAG 2 cut(s) 442, 1168
AgeI ACCGGT 1 cut(s) 923
AgsI TTSAA 4 cut(s) 60, 148, 605, 896
AjnI CCWGG 3 cut(s) 52, 85, 1107
AluBI AGCT 6 cut(s) 144, 218, 262, 398, 901, 1197
AluI AGCT 6 cut(s) 144, 218, 262, 398, 901, 1197
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 88, 208
AlwNI CAGNNNCTG 1 cut(s) 904
Ama87I CYCGRG 2 cut(s) 219, 486
AoxI GGCC 1 cut(s) 666
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 4 cut(s) 37, 190, 364, 591
AsiGI ACCGGT 1 cut(s) 923
Asp700I GAANNNNTTC 1 cut(s) 160
Asp718I GGTACC 1 cut(s) 920
AspA2I CCTAGG 1 cut(s) 26
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 3 cut(s) 212, 667, 1078
AsuC2I CCSGG 2 cut(s) 1082, 1123
AsuHPI GGTGA 4 cut(s) 195, 569, 632, 665
AvaI CYCGRG 2 cut(s) 219, 486
AvaII GGWCC 2 cut(s) 212, 1078
AvrII CCTAGG 1 cut(s) 26
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 166
BccI CCATC 7 cut(s) 393, 445, 678, 944, 1160, 1167, 1179
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 3 cut(s) 54, 87, 1109
BciVI GTATCC 1 cut(s) 821
BcnI CCSGG 2 cut(s) 1082, 1123
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 3 cut(s) 27, 599, 1194
BfmI CTRYAG 2 cut(s) 207, 586
BfrI CTTAAG 2 cut(s) 442, 1168
BfuAI ACCTGC 2 cut(s) 214, 756
BfuI GTATCC 1 cut(s) 821
BglII AGATCT 1 cut(s) 122
BisI GCNGC 2 cut(s) 180, 355
BlnI CCTAGG 1 cut(s) 26
BlsI GCNGC 2 cut(s) 181, 356
Bme1390I CCNGG 5 cut(s) 54, 87, 1082, 1109, 1123
Bme18I GGWCC 2 cut(s) 212, 1078
BmeT110I CYCGRG 2 cut(s) 219, 486
BmgT120I GGNCC 3 cut(s) 212, 667, 1078
BmiI GGNNCC 3 cut(s) 91, 382, 922
BmrFI CCNGG 5 cut(s) 54, 87, 1082, 1109, 1123
BmsI GCATC 3 cut(s) 55, 523, 808
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 2 cut(s) 36, 69
BpuMI CCSGG 2 cut(s) 1082, 1123
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 2 cut(s) 26, 272
BsaWI WCCGGW 1 cut(s) 923
Bsc4I CCNNNNNNNGG 6 cut(s) 27, 240, 447, 493, 529, 634
Bse118I RCCGGY 1 cut(s) 923
Bse1I ACTGG 1 cut(s) 909
BseBI CCWGG 3 cut(s) 54, 87, 1109
BseDI CCNNGG 2 cut(s) 26, 272
BseGI GGATG 4 cut(s) 98, 282, 456, 538
BseLI CCNNNNNNNGG 6 cut(s) 27, 240, 447, 493, 529, 634
BseNI ACTGG 1 cut(s) 909
BseRI GAGGAG 3 cut(s) 82, 297, 959
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 1126
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 668
BshNI GGYRCC 1 cut(s) 920
BshTI ACCGGT 1 cut(s) 923
BsiHKCI CYCGRG 2 cut(s) 219, 486
BsiSI CCGG 3 cut(s) 924, 1081, 1122
BslFI GGGAC 3 cut(s) 3, 235, 978
BslI CCNNNNNNNGG 6 cut(s) 27, 240, 447, 493, 529, 634
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 3 cut(s) 3, 235, 978
BsmI GAATGC 3 cut(s) 644, 683, 1101
BsnI GGCC 1 cut(s) 668
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 2 cut(s) 219, 486
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 4 cut(s) 80, 122, 200, 417
BspACI CCGC 3 cut(s) 272, 274, 354
BspANI GGCC 1 cut(s) 668
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 91, 382, 922
BspMAI CTGCAG 2 cut(s) 211, 590
BspMI ACCTGC 2 cut(s) 214, 756
BspPI GGATC 2 cut(s) 88, 208
BspT107I GGYRCC 1 cut(s) 920
BspTI CTTAAG 2 cut(s) 442, 1168
BspTNI GGTCTC 1 cut(s) 617
BsrFI RCCGGY 1 cut(s) 923
BsrI ACTGG 1 cut(s) 909
BssAI RCCGGY 1 cut(s) 923
BssECI CCNNGG 2 cut(s) 26, 272
BssMI GATC 4 cut(s) 80, 122, 200, 417
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 3 cut(s) 54, 87, 1109
Bst4CI ACNGT 1 cut(s) 609
Bst6I CTCTTC 4 cut(s) 100, 275, 570, 948
BstAFI CTTAAG 2 cut(s) 442, 1168
BstAPI GCANNNNNTGC 2 cut(s) 847, 1118
BstC8I GCNNGC 5 cut(s) 400, 731, 872, 876, 1089
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 272
BstEII GGTNACC 1 cut(s) 436
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 4 cut(s) 98, 282, 456, 538
BstFNI CGCG 1 cut(s) 274
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 4 cut(s) 83, 125, 203, 420
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 4 cut(s) 80, 122, 200, 417
BstMWI GCNNNNNNNGC 3 cut(s) 215, 847, 1118
BstNI CCWGG 3 cut(s) 54, 87, 1109
BstNSI RCATGY 1 cut(s) 874
BstPI GGTNACC 1 cut(s) 436
BstSCI CCNGG 5 cut(s) 52, 85, 1080, 1107, 1121
BstSFI CTRYAG 2 cut(s) 207, 586
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 80, 122
BstYI RGATCY 2 cut(s) 80, 122
BsuI GTATCC 1 cut(s) 821
BsuRI GGCC 1 cut(s) 668
BtgI CCRYGG 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 1151
BtsCI GGATG 4 cut(s) 98, 282, 456, 538
BveI ACCTGC 2 cut(s) 214, 756
Cac8I GCNNGC 5 cut(s) 400, 731, 872, 876, 1089
CaiI CAGNNNCTG 1 cut(s) 904
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 1 cut(s) 923
Cfr13I GGNCC 3 cut(s) 212, 667, 1078
Cfr42I CCGCGG 1 cut(s) 275
CseI GACGC 1 cut(s) 1014
Csp6I GTAC 1 cut(s) 921
CspAI ACCGGT 1 cut(s) 923
CviAII CATG 3 cut(s) 338, 871, 954
CviQI GTAC 1 cut(s) 921
DdeI CTNAG 1 cut(s) 140
DpnI GATC 4 cut(s) 82, 124, 202, 419
DpnII GATC 4 cut(s) 80, 122, 200, 417
DraIII CACNNNGTG 1 cut(s) 341
Eam1104I CTCTTC 4 cut(s) 100, 275, 570, 948
EarI CTCTTC 4 cut(s) 100, 275, 570, 948
Eco130I CCWWGG 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 617
Eco47I GGWCC 2 cut(s) 212, 1078
Eco57I CTGAAG 2 cut(s) 147, 591
Eco88I CYCGRG 2 cut(s) 219, 486
Eco91I GGTNACC 1 cut(s) 436
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 436
EcoRII CCWGG 3 cut(s) 52, 85, 1107
EcoT14I CCWWGG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 3 cut(s) 341, 874, 957
FalI AAGNNNNNCTT 6 cut(s) 425, 457, 642, 674, 1080, 1112
FaqI GGGAC 3 cut(s) 3, 235, 978
FatI CATG 3 cut(s) 337, 870, 953
Fnu4HI GCNGC 2 cut(s) 180, 355
FokI GGATG 4 cut(s) 85, 289, 463, 545
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 180, 355
FspBI CTAG 3 cut(s) 27, 599, 1194
GlaI GCGC 1 cut(s) 682
GluI GCNGC 2 cut(s) 180, 355
GsaI CCCAGC 1 cut(s) 1130
GsuI CTGGAG 2 cut(s) 36, 69
HaeIII GGCC 1 cut(s) 668
HapII CCGG 3 cut(s) 924, 1081, 1122
HgaI GACGC 1 cut(s) 1014
HhaI GCGC 1 cut(s) 683
Hin1II CATG 3 cut(s) 341, 874, 957
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 4 cut(s) 151, 329, 455, 966
HpaII CCGG 3 cut(s) 924, 1081, 1122
HphI GGTGA 4 cut(s) 195, 569, 632, 665
Hpy166II GTNNAC 2 cut(s) 267, 656
Hpy188I TCNGA 7 cut(s) 135, 166, 196, 417, 571, 782, 1201
Hpy188III TCNNGA 5 cut(s) 148, 172, 221, 674, 893
Hpy8I GTNNAC 2 cut(s) 267, 656
Hpy99I CGWCG 1 cut(s) 1030
HpyAV CCTTC 7 cut(s) 169, 191, 240, 486, 487, 491, 608
HpyCH4III ACNGT 1 cut(s) 609
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 847, 1118
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 3 cut(s) 341, 874, 957
HspAI GCGC 1 cut(s) 681
KpnI GGTACC 1 cut(s) 924
KspI CCGCGG 1 cut(s) 275
Kzo9I GATC 4 cut(s) 80, 122, 200, 417
LmnI GCTCC 4 cut(s) 95, 380, 407, 1202
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 3 cut(s) 55, 523, 808
MaeI CTAG 3 cut(s) 27, 599, 1194
MaeIII GTNAC 3 cut(s) 436, 707, 754
MalI GATC 4 cut(s) 82, 124, 202, 419
MboI GATC 4 cut(s) 80, 122, 200, 417
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 2 cut(s) 80, 122
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 7 cut(s) 37, 72, 190, 364, 471, 591, 930
MlyI GAGTC 1 cut(s) 960
MmeI TCCRAC 1 cut(s) 32
MroXI GAANNNNTTC 1 cut(s) 160
MseI TTAA 3 cut(s) 42, 443, 1169
MslI CAYNNNNRTG 2 cut(s) 952, 977
MspA1I CMGCKG 1 cut(s) 274
MspCI CTTAAG 2 cut(s) 442, 1168
MspI CCGG 3 cut(s) 924, 1081, 1122
MspR9I CCNGG 5 cut(s) 54, 87, 1082, 1109, 1123
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 3 cut(s) 644, 683, 1101
MvaI CCWGG 3 cut(s) 54, 87, 1109
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 3 cut(s) 215, 847, 1118
NciI CCSGG 2 cut(s) 1082, 1123
NdeII GATC 4 cut(s) 80, 122, 200, 417
NlaIII CATG 3 cut(s) 341, 874, 957
NlaIV GGNNCC 3 cut(s) 91, 382, 922
NmuCI GTSAC 1 cut(s) 754
NspI RCATGY 1 cut(s) 874
PaeI GCATGC 1 cut(s) 874
PaeR7I CTCGAG 1 cut(s) 219
PaqCI CACCTGC 1 cut(s) 214
PctI GAATGC 3 cut(s) 644, 683, 1101
PdmI GAANNNNTTC 1 cut(s) 160
PfeI GAWTC 3 cut(s) 151, 329, 455
PinAI ACCGGT 1 cut(s) 923
PkrI GCNGC 2 cut(s) 181, 356
PleI GAGTC 1 cut(s) 960
PpsI GAGTC 1 cut(s) 960
Psp6I CCWGG 3 cut(s) 52, 85, 1107
PspEI GGTNACC 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 1126
PspGI CCWGG 3 cut(s) 52, 85, 1107
PspN4I GGNNCC 3 cut(s) 91, 382, 922
PspPI GGNCC 3 cut(s) 212, 667, 1078
PstI CTGCAG 2 cut(s) 211, 590
PstNI CAGNNNCTG 1 cut(s) 904
PsuI RGATCY 2 cut(s) 80, 122
RsaI GTAC 1 cut(s) 922
RsaNI GTAC 1 cut(s) 921
RseI CAYNNNNRTG 2 cut(s) 952, 977
SacII CCGCGG 1 cut(s) 275
SaqAI TTAA 3 cut(s) 42, 443, 1169
SatI GCNGC 2 cut(s) 180, 355
Sau3AI GATC 4 cut(s) 80, 122, 200, 417
Sau96I GGNCC 3 cut(s) 212, 667, 1078
SbfI CCTGCAGG 1 cut(s) 211
SchI GAGTC 1 cut(s) 960
ScrFI CCNGG 5 cut(s) 54, 87, 1082, 1109, 1123
SdaI CCTGCAGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 3 cut(s) 55, 523, 808
SfcI CTRYAG 2 cut(s) 207, 586
Sfr274I CTCGAG 1 cut(s) 219
Sfr303I CCGCGG 1 cut(s) 275
SgrBI CCGCGG 1 cut(s) 275
SinI GGWCC 2 cut(s) 212, 1078
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 952, 977
SmlI CTYRAG 3 cut(s) 219, 442, 1168
SmoI CTYRAG 3 cut(s) 219, 442, 1168
SphI GCATGC 1 cut(s) 874
Sse8387I CCTGCAGG 1 cut(s) 211
Sse9I AATT 7 cut(s) 37, 72, 190, 364, 471, 591, 930
SsiI CCGC 3 cut(s) 272, 274, 354
SspMI CTAG 3 cut(s) 27, 599, 1194
StyD4I CCNGG 5 cut(s) 52, 85, 1080, 1107, 1121
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 609
TaqI TCGA 7 cut(s) 154, 171, 220, 388, 512, 787, 1161
TasI AATT 7 cut(s) 37, 72, 190, 364, 471, 591, 930
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 3 cut(s) 151, 329, 455
Tru1I TTAA 3 cut(s) 42, 443, 1169
Tru9I TTAA 3 cut(s) 42, 443, 1169
TseFI GTSAC 1 cut(s) 754
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 754
TspDTI ATGAA 3 cut(s) 87, 293, 942
TspGWI ACGGA 2 cut(s) 455, 545
Vha464I CTTAAG 2 cut(s) 442, 1168
VpaK11BI GGWCC 2 cut(s) 212, 1078
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 4 cut(s) 37, 190, 364, 591
XceI RCATGY 1 cut(s) 874
XhoI CTCGAG 1 cut(s) 219
XmaJI CCTAGG 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 160
XspI CTAG 3 cut(s) 27, 599, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.