Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012193

Physical Location & Seq

Genomic Coordinates Forward (+)

29879501 .. 29885311

Gene Structure 5811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34430.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4122 bp

ATGGCGATTGAGAAGAACAACTTCAAGGTTTCGAGGCTGGATTCGGAGGTGTCTCCTGGTAGTAGGAAGAGTGTTTCCAGTGACGACGATGAGCTTCAGCAGCGGAGCTCAGCTGCCGAGTCTGATGATGATGATGAGTTTGATGATGCTGACTCCGGGGCGGGGTCGGATGACTTTGATTTGTTGGAGTTAGGGGAGACTGGTGTGGAGTATTGCCAGGTTGGGAATCAGACTTGCGGCATTCCTTTCGAGCTGTATGATCTTCCGAGTCTGGAGGATATTTTGTCTGTGGATGTGTGGAATGAGTGCTTGAGTGAGGAGGAGCAGTTTGGGCTTACCAAGTATCTGCCTGACATGGACCAGGAGACGTTTATGATTACCATGAAGGAGCTTTTCGAGGGGAGTAACTTCCATTTCGGGAGCCCCGTGACAAAGCTGTTCGATATGTTGAAGGGAGGTTTGTGCGAGCCGAGAGTTGCACTTTACCGCGAGGGTTTGAATTTCTTTCAGCACCGACGGCACTACAATCTTCTGAGGAAGCATCAGGACACTATGGTTCGTAATCTCTGTCAGATAAGGGATGCTTGGCTTAATTGCAGGGGATACAGTATTGAGGAGAGGCTAAGGGTGTTGAATATTATGAGAATCCAGAAGAGTTTGATGTCTGAGAAGATGGAAGATATGCCCTGTGACTCATCTGAAAGAGATTCTGGTGAAGGTCTGCACAGTAACAAGATCAAGGACAGGAAAGTAGCACAGCAAATGAGTCGTCATTCTCCGTATGGGGTGGGCTCGAACATGGATTTTGCATCAAAAGGGCGGTCGTCGTCTTTGGAAGTGGCAAAATATGGGAAGCAGAACTCCAAAGGTATACTGAAGTTGGGTGGTTCAAAGACTCCTTCAGAAAAAGAGCTAGCAAGTTATCCTGGACCATACAGTTCAGCAGTTGTTCTTCCTCGGTCGAATAAGCCCGGGGCGTATGATTCTGGGGCAGCTCTCAGAATGAGGGATCAGATGATAAGTAGTGATGATGCTGAAGAAGCAACATATGGAATTAAAGTTCAGCAAGATCGATTTGCGTCTCGTGGTAGCATGCTTGACAAGGCTGGTCTTCTGAAAGCGGGAAAGAACCTTGTAAGAGGTAATGATGTAATAACTGACAGTTTGATGGGTCTGCCTCTCTCTTCAAAGAATGAGGGGAATGCCTATGGTAGGAACCGGGATGCAAACCTTCTGTCGGAGGCAAAGGTATTGACAGCCAAGCCTCCTAACATGAGGGCTCCATATGATTTTGGTATGAAGGCCAAATATCCAGGAAATATTCAGCAGTACGCAGTAGGTGATCAGATGAAATTCTTGAAAGGCAGACTTCCACAGGCACCTTTCAGAGGTGATCGATATGATTCATCCGATCAAGCTGATCTATTCTGGAATAACAGGAGTGAAGGGGAGGCTTTTGCTACAGAATCCCCCTTTCGAGCAGATGATTGGAGTCTGAGGAGCAAGAAATGGAAGATTGGGGGTGAGTCTCCTGATTTAAATTACAAGTCCTATAGAGCTTCCCCTCCACAGATGAATGATAGACTTTCCGAATTTAGAGCAAAACCATTGCAAAGGAAGTTAAGAGGGAATACACTACATAATGGAGGATCAGACATGGTGGCATTGAAAGGTAATAGAATGTTTGTTAAAAATGAAGAAACAGAATCAGACTCATCAGATCAATTTGAAGATGATGAGGATAACAACCCTCTATTGAGAAGCAAGTTGGCTTATCCCAGTGGCTCTATGGAAGGTTCTCCATCTTCGTTGTTGATGCCCAATCTAGACGGAAAAAGAGCCAAATATGCACAGAAAGAGGTGAAGAATATGCAGGCCCTTGAGGGGATCAATTACTCCTCCAAAAAGATGGGTGGTTTTGTTGATCAAGGAAATATGCGTAGTTTAGATAACTATTCTTCCAAAACAAAACAGAAGGGTAAGATGGGAGACGGTAGTCCCTTGCATTTGGAAGGGCGTTATGTCCCCGGCTTCGATAACCTTGACGACAATGATGACGATGAACTGAAACCGATCTACAAATTGGGCAAGAATGCAAAATTTCAAGGTGGAGCTGGTGAAAGGTTGCATGTACCCTCACTCAAGACCTATACTGCTAGTGGAAAGCAGAAACCTGAAGTTGTTCATGACCATTCTGTTTCACAGTCTCACTACTTTGTTGATGAGGAAGATGATTCACTTCAAATGCGTTTACTGGGAGATGGTAGTGCGCAGGGTAGATTGAGAAACAAAGGCCAGAACGTCGAAGCATACATGAGGGATCACCGTGAAAACATTGAGGTCCCATTACTGGGTTGCAGTTTGGTGACAAAGAAGCGGAAAGGGAAAGAGGATGCAATGGATACAAGTAGAGGAGATGAAGATCTTCTGTCGAATCATTTGCAACGTAGTGCCGAGTCCAATTCCTTGAAAAAAAAGGTAAAGAGGAAGATGGAAACGGAAACTGGTAGTTCAGATATGGAAATTTCTGAGCCACCAGTTACAGAAATGGGAGCAACAGATATGGAGCTGGAAACCAAGCCCCAGAAAAAGCCATTTATTTTAATTACACCCACTGTTCATACTGGTTTCTCATTCTCGATTATGCATCTTCTTTCAGCAGTTCGCTTGGCAATGATTACTCCACGTTCGGAAGATACTTTAGATGTTGGGGAACCTATAGATGAGAAGAATAAAAGTCAGGAAGATGGTGCCAATGGCGTTATTACTGATAAGAATGTGGATGCAAATAACTCTGAGCATGATGGAGAAGGGAGCACGCCTTTTGTAACAGTTCAGGAGATTGTGAATCGTGTTAGATCAAATCCAGGAGATCCTTGTATTCTTGAGACACAAGAGCCACTTCAGGATCTGGTGAGAGGAGTTCTGAAGATATTTTCATCAAAAACAGCTCCTTTGGGGGCGAAGGGTTGGAAGCCATTAGCTGCCTATGAAAAAGCTACAAAAAGTTGGTCATGGACTGGCCCAGTTTCTCATAGTTCATCAGATAATGAGACCATTGAGGAGGTAACATCTCCTGAAGCATGGGGTCTTCCTCACAAGATGCTTGTCAAGTTGGTTGATTCATTTGCTAATTGGCTGAAATGTGGGCAAGAGACCCTCCAACAAATAGGAAGTCTTCCTGCACCGCCTTTGGAGCTGATGCAGCCCAACATAGATGAGAAGGACAGGTTTAGGGACCTAAGAGCTCAAAAGAGTCTTAGTACCATCACTCCAAGTTCTGAAGAAGTGAAAGCTTATTTCCGTAAGGAGGAACTTCTTAGGTATTCAGTACCTGACAGGGCCTTCTCTTACACCGCAGCTGATGGTAAAAAATCTATCGTTGCCCCATTGAGAAGGTGCGGTGGTAAGCCAACATCAAAAGCCCGAGATCATTTTATGCTGAAACGTGACAGACCACCACATGTTACAATCCTTTGTCTTGTGAGAGACGCAGCTGCTAGATTGCCTGGAAGTATTGGCACCAGAGCAGATGTCTGTACTTTGATAAGAGATTCTCAGTATATTGTTGAAGAAGTGTCTGATACACAAGTAAATCAAGTTGTTAGTGGAGCTCTGGACCGCTTGCATTATGAGCGTGATCCTTGTGTACAATTTGATGGAGAAAGAAAATTATGGGTCTATTTACATAGAGAAAGAGAAGAAGAGGATTTTGAGGATGATGGTACTTCATCTACAAAGAAATGGAAGAGGCAGAAAAAGGATGCTGCTGATCAAGCTGACCTAGGAGGAGTGACAGTGGCTTATCCTGGATCTGAGGAACAATCTGGATATGATTTGTGTTCCGATCTTAATGCAGACCCATCATTTTTGGATGATGACAAGGGAATGGAACTTGAATACGATGATGTGAGACAGGATGCAGATGTCGATGCTGATCCCAATCAGGGGTCTGAACTAGACGAAATGCATCAAGACAATCCAATTTGGGAGGGTCTTGATTTAAATCCTATGCGCGAAAGAAAATTGCTTTGTCAGGAAAACTCCACAAATGAAGATTTTGATGATGAAGCGTTTGGCAGAGAAAGGACCGTTGGGCTCTTGAGTGCAAGCTTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0019899 GO:0031011 GO:0031974 GO:0031981 GO:0032991 GO:0033202 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0070603 GO:0097346 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1374

Amino Acids

153.57

Weight (kDa)

5.19

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_2nd_NFRKB	PF25793	1098 - 1236	8.8e-65	NFRKB second winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45830
fragaria_vesca	FvH4_3g34430 FvH4_3g34430
malus_domestica	MD03G1106200.v1.1 MD11G1118300.v1.1
prunus_persica	Prupe.6G088700_v2.0.a1
pyrus_communis	pycom03g08520 pycom11g09930
rosa_chinensis	RchiOBHm_Chr5g0062031
rosa_laevigata	RLG00000035527
rosa_multiflora	Rmu_sc0002296.1_g000008 Rmu_sc0017669.1_g000005
rosa_roxburghii	Rroxscaffold_1G00018660
rosa_rugosa	Rorug05G0345700
rosa_samantha	Rh5AG407000 Rh5BG420300 Rh5CG444400 Rh5DG435700
rosa_wichuraiana	Rw5G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2271
AccB1I	GGYRCC	3 cut(s)	1378, 2750, 3521
AccI	GTMKAC	1 cut(s)	871
AccII	CGCG	2 cut(s)	489, 4017
AclWI	GGATC	9 cut(s)	1017, 1657, 1895, 2328, 2867, 2916, 3635, 3820, 3932
AcsI	RAATTY	5 cut(s)	499, 1352, 1592, 2099, 2523
AcuI	CTGAAG	9 cut(s)	80, 885, 896, 1056, 2196, 2888, 2948, 3099, 3303
AfaI	GTAC	7 cut(s)	1331, 2133, 3265, 3333, 3541, 3651, 3727
AflIII	ACRYGT	1 cut(s)	3463
AjnI	CCWGG	8 cut(s)	55, 216, 360, 925, 1312, 2866, 3508, 3808
AjuI	GAANNNNNNNTTGG	2 cut(s)	4077, 4109
AloI	GAACNNNNNNTCC	2 cut(s)	1044, 1076
Alw21I	GWGCWC	4 cut(s)	110, 2819, 3250, 3616
AlwI	GGATC	9 cut(s)	1017, 1657, 1895, 2328, 2867, 2916, 3635, 3820, 3932
AlwNI	CAGNNNCTG	2 cut(s)	2911, 3335
Ama87I	CYCGRG	2 cut(s)	971, 3426
AoxI	GGCC	5 cut(s)	1302, 1875, 2293, 3022, 3342
ApeKI	GCWGC	9 cut(s)	100, 113, 992, 2984, 3205, 3359, 3494, 3497, 3767
ApoI	RAATTY	5 cut(s)	499, 1352, 1592, 2099, 2523
Asp700I	GAANNNNTTC	3 cut(s)	20, 2181, 2424
AspA2I	CCTAGG	1 cut(s)	3784
AspLEI	GCGC	2 cut(s)	2272, 4017
AspS9I	GGNCC	9 cut(s)	358, 929, 1876, 2341, 3023, 3238, 3342, 3619, 4089
AsuC2I	CCSGG	5 cut(s)	157, 972, 973, 1220, 2028
AsuHPI	GGTGA	9 cut(s)	725, 1352, 1403, 1535, 1873, 2129, 2315, 2377, 2926
AsuNHI	GCTAGC	1 cut(s)	913
AvaI	CYCGRG	2 cut(s)	971, 3426
AvaII	GGWCC	6 cut(s)	358, 929, 2341, 3238, 3619, 4089
AvrII	CCTAGG	1 cut(s)	3784
BaeI	ACNNNNGTAYC	2 cut(s)	3576, 3609
BanI	GGYRCC	3 cut(s)	1378, 2750, 3521
BanII	GRGCYC	7 cut(s)	110, 425, 794, 1282, 3250, 3616, 4101
BauI	CACGAG	1 cut(s)	1083
BbsI	GAAGAC	3 cut(s)	1103, 3083, 3170
Bbv12I	GWGCWC	4 cut(s)	110, 2819, 3250, 3616
BbvI	GCAGC	9 cut(s)	100, 112, 1004, 2971, 3217, 3371, 3484, 3506, 3754
BceAI	ACGGC	1 cut(s)	533
BcgI	CGANNNNNNTGC	8 cut(s)	229, 263, 749, 783, 2422, 2456, 3836, 3870
BciT130I	CCWGG	8 cut(s)	57, 218, 362, 927, 1314, 2868, 3510, 3810
BciVI	GTATCC	2 cut(s)	596, 2395
BclI	TGATCA	3 cut(s)	1342, 1924, 3772
BcnI	CCSGG	5 cut(s)	157, 972, 973, 1220, 2028
BfaI	CTAG	6 cut(s)	914, 1826, 2157, 3501, 3785, 3959
BfmI	CTRYAG	3 cut(s)	1461, 1552, 2718
BfuI	GTATCC	2 cut(s)	596, 2395
BglII	AGATCT	1 cut(s)	2422
BlnI	CCTAGG	1 cut(s)	3784
BlpI	GCTNAGC	1 cut(s)	109
Bme18I	GGWCC	6 cut(s)	358, 929, 2341, 3238, 3619, 4089
BmeT110I	CYCGRG	2 cut(s)	971, 3426
BmgT120I	GGNCC	9 cut(s)	358, 929, 1876, 2341, 3023, 3238, 3342, 3619, 4089
BmiI	GGNNCC	9 cut(s)	422, 1217, 1281, 1380, 2343, 2715, 2752, 3239, 3523
BmrI	ACTGGG	4 cut(s)	1773, 2264, 2360, 3020
BmtI	GCTAGC	1 cut(s)	917
BmuI	ACTGGG	4 cut(s)	1773, 2264, 2360, 3020
BoxI	GACNNNNGTC	1 cut(s)	1995
BpiI	GAAGAC	3 cut(s)	1103, 3083, 3170
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	623
Bpu1102I	GCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	4 cut(s)	331, 1901, 2126, 2906
BpuMI	CCSGG	5 cut(s)	157, 972, 973, 1220, 2028
Bsa29I	ATCGAT	2 cut(s)	1072, 1396
BsaBI	GATNNNNATC	4 cut(s)	2421, 3936, 3942, 4005
BsaI	GGTCTC	2 cut(s)	3047, 3149
BsaJI	CCNNGG	6 cut(s)	156, 956, 971, 972, 2026, 3784
BsaXI	ACNNNNNCTCC	6 cut(s)	311, 341, 3256, 3286, 3783, 3813
Bse3DI	GCAATG	3 cut(s)	1607, 2403, 2679
Bse8I	GATNNNNATC	4 cut(s)	2421, 3936, 3942, 4005
BseBI	CCWGG	8 cut(s)	57, 218, 362, 927, 1314, 2868, 3510, 3810
BseCI	ATCGAT	2 cut(s)	1072, 1396
BseDI	CCNNGG	6 cut(s)	156, 956, 971, 972, 2026, 3784
BseJI	GATNNNNATC	4 cut(s)	2421, 3936, 3942, 4005
BseMI	GCAATG	3 cut(s)	1607, 2403, 2679
BseMII	CTCAG	9 cut(s)	123, 524, 657, 1012, 1487, 2520, 2787, 3572, 3807
BseRI	GAGGAG	9 cut(s)	332, 335, 629, 1513, 1888, 2427, 2934, 3077, 3804
BseXI	GCAGC	9 cut(s)	100, 112, 1004, 2971, 3217, 3371, 3484, 3506, 3754
BsgI	GTGCAG	2 cut(s)	707, 3168
Bsh1236I	CGCG	2 cut(s)	489, 4017
Bsh1285I	CGRYCG	2 cut(s)	824, 962
BshFI	GGCC	5 cut(s)	1304, 1877, 2295, 3024, 3344
BshNI	GGYRCC	3 cut(s)	1378, 2750, 3521
BshVI	ATCGAT	2 cut(s)	1072, 1396
BsiEI	CGRYCG	2 cut(s)	824, 962
BsiHKAI	GWGCWC	4 cut(s)	110, 2819, 3250, 3616
BsiHKCI	CYCGRG	2 cut(s)	971, 3426
BsiSI	CCGG	4 cut(s)	156, 972, 1219, 2028
BslFI	GGGAC	4 cut(s)	1983, 2009, 2327, 3251
BsmBI	CGTCTC	4 cut(s)	359, 1086, 1983, 3483
BsmFI	GGGAC	4 cut(s)	1983, 2009, 2327, 3251
BsmI	GAATGC	3 cut(s)	240, 1207, 2098
BsnI	GGCC	5 cut(s)	1304, 1877, 2295, 3024, 3344
Bso31I	GGTCTC	2 cut(s)	3047, 3149
BsoBI	CYCGRG	2 cut(s)	971, 3426
Bsp1286I	GDGCHC	8 cut(s)	110, 425, 794, 1282, 2819, 3250, 3616, 4101
Bsp1407I	TGTACA	1 cut(s)	3649
Bsp1720I	GCTNAGC	1 cut(s)	109
BspANI	GGCC	5 cut(s)	1304, 1877, 2295, 3024, 3344
BspCNI	CTCAG	9 cut(s)	122, 525, 658, 1011, 1488, 2521, 2788, 3571, 3808
BspDI	ATCGAT	2 cut(s)	1072, 1396
BspFNI	CGCG	2 cut(s)	489, 4017
BspHI	TCATGA	1 cut(s)	2185
BspLI	GGNNCC	9 cut(s)	422, 1217, 1281, 1380, 2343, 2715, 2752, 3239, 3523
BspOI	GCTAGC	1 cut(s)	917
BspPI	GGATC	9 cut(s)	1017, 1657, 1895, 2328, 2867, 2916, 3635, 3820, 3932
BspT107I	GGYRCC	3 cut(s)	1378, 2750, 3521
BspTNI	GGTCTC	2 cut(s)	3047, 3149
BsrDI	GCAATG	3 cut(s)	1607, 2403, 2679
BsrGI	TGTACA	1 cut(s)	3649
BssECI	CCNNGG	6 cut(s)	156, 956, 971, 972, 2026, 3784
BssNAI	GTATAC	1 cut(s)	872
BssSI	CACGAG	1 cut(s)	1083
BssT1I	CCWWGG	1 cut(s)	3784
Bst1107I	GTATAC	1 cut(s)	872
Bst2BI	CACGAG	1 cut(s)	1083
Bst2UI	CCWGG	8 cut(s)	57, 218, 362, 927, 1314, 2868, 3510, 3810
Bst6I	CTCTTC	5 cut(s)	62, 647, 1189, 3699, 3743
BstAUI	TGTACA	1 cut(s)	3649
BstC8I	GCNNGC	7 cut(s)	467, 915, 1094, 1875, 2819, 3626, 4111
BstENI	CCTNNNNNAGG	2 cut(s)	1210, 1386
BstFNI	CGCG	2 cut(s)	489, 4017
BstHHI	GCGC	2 cut(s)	2272, 4017
BstMCI	CGRYCG	2 cut(s)	824, 962
BstMWI	GCNNNNNNNGC	9 cut(s)	100, 331, 517, 1040, 1847, 3196, 3205, 3634, 3776
BstNI	CCWGG	8 cut(s)	57, 218, 362, 927, 1314, 2868, 3510, 3810
BstNSI	RCATGY	3 cut(s)	1096, 2132, 3467
BstPAI	GACNNNNGTC	1 cut(s)	1995
BstSFI	CTRYAG	3 cut(s)	1461, 1552, 2718
BstUI	CGCG	2 cut(s)	489, 4017
BstV1I	GCAGC	9 cut(s)	100, 112, 1004, 2971, 3217, 3371, 3484, 3506, 3754
BstV2I	GAAGAC	3 cut(s)	1103, 3083, 3170
BstX2I	RGATCY	4 cut(s)	2422, 2872, 2908, 3812
BstXI	CCANNNNNNTGG	1 cut(s)	1909
BstYI	RGATCY	4 cut(s)	2422, 2872, 2908, 3812
BstZ17I	GTATAC	1 cut(s)	872
Bsu15I	ATCGAT	2 cut(s)	1072, 1396
BsuI	GTATCC	2 cut(s)	596, 2395
BsuRI	GGCC	5 cut(s)	1304, 1877, 2295, 3024, 3344
BsuTUI	ATCGAT	2 cut(s)	1072, 1396
BtsIMutI	CAGTG	4 cut(s)	85, 1786, 2613, 3804
Cac8I	GCNNGC	7 cut(s)	467, 915, 1094, 1875, 2819, 3626, 4111
CaiI	CAGNNNCTG	2 cut(s)	2911, 3335
CciI	TCATGA	1 cut(s)	2185
CfoI	GCGC	2 cut(s)	2272, 4017
Cfr13I	GGNCC	9 cut(s)	358, 929, 1876, 2341, 3023, 3238, 3342, 3619, 4089
Cfr9I	CCCGGG	1 cut(s)	971
ClaI	ATCGAT	2 cut(s)	1072, 1396
CseI	GACGC	2 cut(s)	1068, 3500
Csp6I	GTAC	7 cut(s)	1330, 2132, 3264, 3332, 3540, 3650, 3726
CviQI	GTAC	7 cut(s)	1330, 2132, 3264, 3332, 3540, 3650, 3726
DraI	TTTAAA	2 cut(s)	1539, 4005
Eam1104I	CTCTTC	5 cut(s)	62, 647, 1189, 3699, 3743
EarI	CTCTTC	5 cut(s)	62, 647, 1189, 3699, 3743
Ecl136II	GAGCTC	3 cut(s)	108, 3248, 3614
Eco130I	CCWWGG	1 cut(s)	3784
Eco24I	GRGCYC	7 cut(s)	110, 425, 794, 1282, 3250, 3616, 4101
Eco31I	GGTCTC	2 cut(s)	3047, 3149
Eco47I	GGWCC	6 cut(s)	358, 929, 2341, 3238, 3619, 4089
Eco53kI	GAGCTC	3 cut(s)	108, 3248, 3614
Eco57I	CTGAAG	9 cut(s)	80, 885, 896, 1056, 2196, 2888, 2948, 3099, 3303
Eco88I	CYCGRG	2 cut(s)	971, 3426
EcoICRI	GAGCTC	3 cut(s)	108, 3248, 3614
EcoNI	CCTNNNNNAGG	2 cut(s)	1210, 1386
EcoO109I	RGGNCCY	4 cut(s)	1876, 2341, 3238, 3342
EcoRII	CCWGG	8 cut(s)	55, 216, 360, 925, 1312, 2866, 3508, 3808
EcoT14I	CCWWGG	1 cut(s)	3784
EcoT22I	ATGCAT	2 cut(s)	2649, 3972
EcoT38I	GRGCYC	7 cut(s)	110, 425, 794, 1282, 3250, 3616, 4101
ErhI	CCWWGG	1 cut(s)	3784
Esp3I	CGTCTC	4 cut(s)	359, 1086, 1983, 3483
FalI	AAGNNNNNCTT	7 cut(s)	37, 568, 600, 1353, 1385, 2886, 2918
FaqI	GGGAC	4 cut(s)	1983, 2009, 2327, 3251
FauI	CCCGC	2 cut(s)	154, 1114
FauNDI	CATATG	2 cut(s)	1048, 1285
FbaI	TGATCA	3 cut(s)	1342, 1924, 3772
FblI	GTMKAC	1 cut(s)	871
FriOI	GRGCYC	7 cut(s)	110, 425, 794, 1282, 3250, 3616, 4101
FspBI	CTAG	6 cut(s)	914, 1826, 2157, 3501, 3785, 3959
FspI	TGCGCA	1 cut(s)	2271
GlaI	GCGC	2 cut(s)	2271, 4016
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	5 cut(s)	1304, 1877, 2295, 3024, 3344
HapII	CCGG	4 cut(s)	156, 972, 1219, 2028
HgaI	GACGC	2 cut(s)	1068, 3500
HhaI	GCGC	2 cut(s)	2272, 4017
Hin6I	GCGC	2 cut(s)	2270, 4015
HinP1I	GCGC	2 cut(s)	2270, 4015
HindIII	AAGCTT	2 cut(s)	3294, 4111
HpaII	CCGG	4 cut(s)	156, 972, 1219, 2028
HphI	GGTGA	9 cut(s)	725, 1352, 1403, 1535, 1873, 2129, 2315, 2377, 2926
Hpy166II	GTNNAC	3 cut(s)	872, 2252, 3650
Hpy8I	GTNNAC	3 cut(s)	872, 2252, 3650
Hpy99I	CGWCG	4 cut(s)	89, 519, 829, 2306
HpyCH4IV	ACGT	5 cut(s)	368, 2301, 2446, 2686, 3448
HpyF10VI	GCNNNNNNNGC	9 cut(s)	100, 331, 517, 1040, 1847, 3196, 3205, 3634, 3776
HpySE526I	ACGT	5 cut(s)	368, 2301, 2446, 2686, 3448
HspAI	GCGC	2 cut(s)	2270, 4015
Ksp22I	TGATCA	3 cut(s)	1342, 1924, 3772
Lsp1109I	GCAGC	9 cut(s)	100, 112, 1004, 2971, 3217, 3371, 3484, 3506, 3754
MaeI	CTAG	6 cut(s)	914, 1826, 2157, 3501, 3785, 3959
MaeII	ACGT	5 cut(s)	368, 2301, 2446, 2686, 3448
MflI	RGATCY	4 cut(s)	2422, 2872, 2908, 3812
MhlI	GDGCHC	8 cut(s)	110, 425, 794, 1282, 2819, 3250, 3616, 4101
MmeI	TCCRAC	5 cut(s)	147, 165, 1218, 2951, 3187
Mph1103I	ATGCAT	2 cut(s)	2649, 3972
MroXI	GAANNNNTTC	3 cut(s)	20, 2181, 2424
MseI	TTAA	8 cut(s)	591, 1056, 1538, 1622, 1689, 2603, 3852, 4004
MspA1I	CMGCKG	4 cut(s)	103, 113, 3362, 3497
MspI	CCGG	4 cut(s)	156, 972, 1219, 2028
Mva1269I	GAATGC	3 cut(s)	240, 1207, 2098
MvaI	CCWGG	8 cut(s)	57, 218, 362, 927, 1314, 2868, 3510, 3810
MvnI	CGCG	2 cut(s)	489, 4017
MwoI	GCNNNNNNNGC	9 cut(s)	100, 331, 517, 1040, 1847, 3196, 3205, 3634, 3776
NciI	CCSGG	5 cut(s)	157, 972, 973, 1220, 2028
NdeI	CATATG	2 cut(s)	1048, 1285
NheI	GCTAGC	1 cut(s)	913
NlaIV	GGNNCC	9 cut(s)	422, 1217, 1281, 1380, 2343, 2715, 2752, 3239, 3523
NmeAIII	GCCGAG	3 cut(s)	142, 495, 2479
NmuCI	GTSAC	6 cut(s)	80, 427, 689, 2365, 3449, 3793
NsbI	TGCGCA	1 cut(s)	2271
NsiI	ATGCAT	2 cut(s)	2649, 3972
NspI	RCATGY	3 cut(s)	1096, 2132, 3467
PaeI	GCATGC	1 cut(s)	1096
PagI	TCATGA	1 cut(s)	2185
PciI	ACATGT	1 cut(s)	3463
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	3 cut(s)	240, 1207, 2098
PdmI	GAANNNNTTC	3 cut(s)	20, 2181, 2424
PfoI	TCCNGGA	4 cut(s)	925, 1312, 2866, 3808
PpuMI	RGGWCCY	2 cut(s)	2341, 3238
PscI	ACATGT	1 cut(s)	3463
PshAI	GACNNNNGTC	1 cut(s)	1995
Psp124BI	GAGCTC	3 cut(s)	110, 3250, 3616
Psp5II	RGGWCCY	2 cut(s)	2341, 3238
Psp6I	CCWGG	8 cut(s)	55, 216, 360, 925, 1312, 2866, 3508, 3808
PspGI	CCWGG	8 cut(s)	55, 216, 360, 925, 1312, 2866, 3508, 3808
PspN4I	GGNNCC	9 cut(s)	422, 1217, 1281, 1380, 2343, 2715, 2752, 3239, 3523
PspPI	GGNCC	9 cut(s)	358, 929, 1876, 2341, 3023, 3238, 3342, 3619, 4089
PspPPI	RGGWCCY	2 cut(s)	2341, 3238
PstNI	CAGNNNCTG	2 cut(s)	2911, 3335
PsuI	RGATCY	4 cut(s)	2422, 2872, 2908, 3812
PvuII	CAGCTG	3 cut(s)	113, 3362, 3497
RsaI	GTAC	7 cut(s)	1331, 2133, 3265, 3333, 3541, 3651, 3727
RsaNI	GTAC	7 cut(s)	1330, 2132, 3264, 3332, 3540, 3650, 3726
SacI	GAGCTC	3 cut(s)	110, 3250, 3616
SaqAI	TTAA	8 cut(s)	591, 1056, 1538, 1622, 1689, 2603, 3852, 4004
Sau96I	GGNCC	9 cut(s)	358, 929, 1876, 2341, 3023, 3238, 3342, 3619, 4089
SduI	GDGCHC	8 cut(s)	110, 425, 794, 1282, 2819, 3250, 3616, 4101
SfcI	CTRYAG	3 cut(s)	1461, 1552, 2718
SinI	GGWCC	6 cut(s)	358, 929, 2341, 3238, 3619, 4089
SmaI	CCCGGG	1 cut(s)	973
SmiI	ATTTAAAT	2 cut(s)	1539, 4005
SmlI	CTYRAG	5 cut(s)	310, 1880, 2141, 2885, 4102
SmoI	CTYRAG	5 cut(s)	310, 1880, 2141, 2885, 4102
SphI	GCATGC	1 cut(s)	1096
SspI	AATATT	2 cut(s)	637, 1321
SspMI	CTAG	6 cut(s)	914, 1826, 2157, 3501, 3785, 3959
SstI	GAGCTC	3 cut(s)	110, 3250, 3616
StyI	CCWWGG	1 cut(s)	3784
SwaI	ATTTAAAT	2 cut(s)	1539, 4005
TaiI	ACGT	5 cut(s)	371, 2304, 2449, 2689, 3451
TaqII	GACCGA	1 cut(s)	948
TatI	WGTACW	2 cut(s)	3539, 3649
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	8 cut(s)	591, 1056, 1538, 1622, 1689, 2603, 3852, 4004
Tru9I	TTAA	8 cut(s)	591, 1056, 1538, 1622, 1689, 2603, 3852, 4004
TscAI	CASTG	4 cut(s)	85, 1786, 2620, 3804
TseFI	GTSAC	6 cut(s)	80, 427, 689, 2365, 3449, 3793
TseI	GCWGC	9 cut(s)	100, 113, 992, 2984, 3205, 3359, 3494, 3497, 3767
Tsp45I	GTSAC	6 cut(s)	80, 427, 689, 2365, 3449, 3793
TspGWI	ACGGA	4 cut(s)	768, 1845, 2513, 3293
TspMI	CCCGGG	1 cut(s)	971
TspRI	CASTG	4 cut(s)	85, 1786, 2620, 3804
VpaK11BI	GGWCC	6 cut(s)	358, 929, 2341, 3238, 3619, 4089
XagI	CCTNNNNNAGG	2 cut(s)	1210, 1386
XapI	RAATTY	5 cut(s)	499, 1352, 1592, 2099, 2523
XbaI	TCTAGA	1 cut(s)	1825
XceI	RCATGY	3 cut(s)	1096, 2132, 3467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1786
XmaI	CCCGGG	1 cut(s)	971
XmaJI	CCTAGG	1 cut(s)	3784
XmiI	GTMKAC	1 cut(s)	871
XmnI	GAANNNNTTC	3 cut(s)	20, 2181, 2424
XspI	CTAG	6 cut(s)	914, 1826, 2157, 3501, 3785, 3959
Zsp2I	ATGCAT	2 cut(s)	2649, 3972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.