protease binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G45830 |
| fragaria_vesca | FvH4_3g34430 FvH4_3g34430 |
| malus_domestica | MD03G1106200.v1.1 MD11G1118300.v1.1 |
| prunus_persica | Prupe.6G088700_v2.0.a1 |
| pyrus_communis | pycom03g08520 pycom11g09930 |
| rosa_chinensis | RchiOBHm_Chr5g0062031 |
| rosa_laevigata | RLG00000035527 |
| rosa_multiflora | Rmu_sc0002296.1_g000008 Rmu_sc0017669.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00018660 |
| rosa_rugosa | Rorug05G0345700 |
| rosa_samantha | Rh5AG407000 Rh5BG420300 Rh5CG444400 Rh5DG435700 |
| rosa_wichuraiana | Rw5G038350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 3623 |
| AccBSI | CCGCTC | 1 cut(s) | 1547 |
| AccI | GTMKAC | 1 cut(s) | 931 |
| AccII | CGCG | 1 cut(s) | 1482 |
| AccIII | TCCGGA | 1 cut(s) | 3283 |
| AclI | AACGTT | 1 cut(s) | 4154 |
| AclWI | GGATC | 9 cut(s) | 1077, 1416, 1729, 1970, 2627, 2969, 3018, 3737, 4049 |
| AcoI | YGGCCR | 2 cut(s) | 2281, 3084 |
| AcsI | RAATTY | 7 cut(s) | 56, 197, 559, 1664, 2625, 3276, 4123 |
| AcuI | CTGAAG | 6 cut(s) | 945, 956, 2424, 2990, 3201, 3405 |
| AfaI | GTAC | 8 cut(s) | 853, 1266, 1710, 2298, 2748, 3643, 3665, 3829 |
| AflII | CTTAAG | 1 cut(s) | 1540 |
| AflIII | ACRYGT | 2 cut(s) | 3565, 3678 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2530 |
| AjiI | CACGTC | 1 cut(s) | 3679 |
| AjnI | CCWGG | 6 cut(s) | 420, 1046, 2968, 3315, 3610, 3717 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4158, 4190 |
| Alw21I | GWGCWC | 3 cut(s) | 20, 3352, 3947 |
| AlwI | GGATC | 9 cut(s) | 1077, 1416, 1729, 1970, 2627, 2969, 3018, 3737, 4049 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2501, 3013, 3464 |
| Ama87I | CYCGRG | 2 cut(s) | 2119, 3528 |
| Aor13HI | TCCGGA | 1 cut(s) | 3283 |
| AoxI | GGCC | 7 cut(s) | 391, 1029, 1368, 1950, 2281, 3084, 3444 |
| ApaI | GGGCCC | 1 cut(s) | 1954 |
| ApeKI | GCWGC | 6 cut(s) | 173, 297, 3307, 3461, 3596, 3599 |
| ApoI | RAATTY | 7 cut(s) | 56, 197, 559, 1664, 2625, 3276, 4123 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 1286, 1318, 2083, 2115, 3098, 3130, 3195, 3227 |
| AseI | ATTAAT | 1 cut(s) | 1217 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 80, 1386 |
| AspLEI | GCGC | 1 cut(s) | 1484 |
| AsuC2I | CCSGG | 3 cut(s) | 117, 548, 686 |
| AsuHPI | GGTGA | 9 cut(s) | 737, 785, 1097, 1220, 1863, 2228, 2534, 3028, 3181 |
| AsuNHI | GCTAGC | 1 cut(s) | 973 |
| AvaI | CYCGRG | 2 cut(s) | 2119, 3528 |
| AvaII | GGWCC | 9 cut(s) | 418, 989, 1195, 1344, 2440, 2816, 3125, 3340, 3721 |
| BaeGI | GKGCMC | 1 cut(s) | 1954 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 843, 876 |
| BalI | TGGCCA | 1 cut(s) | 2283 |
| BanI | GGYRCC | 1 cut(s) | 3623 |
| BanII | GRGCYC | 5 cut(s) | 485, 1954, 3352, 3718, 4182 |
| BbsI | GAAGAC | 7 cut(s) | 959, 1104, 1869, 2249, 3083, 3185, 3681 |
| Bbv12I | GWGCWC | 3 cut(s) | 20, 3352, 3947 |
| BbvCI | CCTCAGC | 1 cut(s) | 1017 |
| BbvI | GCAGC | 6 cut(s) | 160, 309, 3319, 3473, 3586, 3608 |
| BciT130I | CCWGG | 6 cut(s) | 422, 1048, 2970, 3317, 3612, 3719 |
| BciVI | GTATCC | 1 cut(s) | 1386 |
| BclI | TGATCA | 2 cut(s) | 2287, 2778 |
| BcnI | CCSGG | 3 cut(s) | 117, 548, 686 |
| BfaI | CTAG | 5 cut(s) | 138, 974, 1898, 2021, 2354 |
| BfmI | CTRYAG | 1 cut(s) | 2820 |
| BfrI | CTTAAG | 1 cut(s) | 1540 |
| BfuI | GTATCC | 1 cut(s) | 1386 |
| BisI | GCNGC | 9 cut(s) | 174, 298, 575, 1734, 3087, 3308, 3462, 3597, 3600 |
| BlsI | GCNGC | 9 cut(s) | 175, 299, 576, 1735, 3088, 3309, 3463, 3598, 3601 |
| Bme1390I | CCNGG | 9 cut(s) | 117, 422, 548, 686, 1048, 2970, 3317, 3612, 3719 |
| Bme18I | GGWCC | 9 cut(s) | 418, 989, 1195, 1344, 2440, 2816, 3125, 3340, 3721 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2530 |
| BmeT110I | CYCGRG | 2 cut(s) | 2119, 3528 |
| BmgBI | CACGTC | 1 cut(s) | 3679 |
| BmrFI | CCNGG | 9 cut(s) | 117, 422, 548, 686, 1048, 2970, 3317, 3612, 3719 |
| BmrI | ACTGGG | 2 cut(s) | 1845, 3927 |
| BmtI | GCTAGC | 1 cut(s) | 977 |
| BmuI | ACTGGG | 2 cut(s) | 1845, 3927 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2070 |
| BpiI | GAAGAC | 7 cut(s) | 959, 1104, 1869, 2249, 3083, 3185, 3681 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 523, 555, 737, 769, 1579, 1611, 2318, 2350 |
| BpmI | CTGGAG | 1 cut(s) | 2928 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1017, 3066 |
| BpuEI | CTTGAG | 3 cut(s) | 391, 1360, 3008 |
| BpuMI | CCSGG | 3 cut(s) | 117, 548, 686 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1654, 4017 |
| BsaI | GGTCTC | 2 cut(s) | 419, 3251 |
| BsaJI | CCNNGG | 4 cut(s) | 1047, 3294, 3717, 3886 |
| BsaWI | WCCGGW | 1 cut(s) | 3283 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 371, 401 |
| Bse3DI | GCAATG | 2 cut(s) | 1294, 2781 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1654, 4017 |
| BseAI | TCCGGA | 1 cut(s) | 3283 |
| BseBI | CCWGG | 6 cut(s) | 422, 1048, 2970, 3317, 3612, 3719 |
| BseDI | CCNNGG | 4 cut(s) | 1047, 3294, 3717, 3886 |
| BseJI | GATNNNNATC | 2 cut(s) | 1654, 4017 |
| BseMI | GCAATG | 2 cut(s) | 1294, 2781 |
| BseMII | CTCAG | 7 cut(s) | 771, 1031, 1072, 2628, 2910, 3436, 3674 |
| BseSI | GKGCMC | 1 cut(s) | 1954 |
| BseXI | GCAGC | 6 cut(s) | 160, 309, 3319, 3473, 3586, 3608 |
| BseYI | CCCAGC | 2 cut(s) | 944, 1234 |
| Bsh1236I | CGCG | 1 cut(s) | 1482 |
| BshFI | GGCC | 7 cut(s) | 393, 1031, 1370, 1952, 2283, 3086, 3446 |
| BshNI | GGYRCC | 1 cut(s) | 3623 |
| BsiHKAI | GWGCWC | 3 cut(s) | 20, 3352, 3947 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2119, 3528 |
| BsiSI | CCGG | 5 cut(s) | 117, 547, 685, 1032, 3284 |
| BslFI | GGGAC | 5 cut(s) | 2058, 2426, 2829, 3353, 3928 |
| BsmFI | GGGAC | 5 cut(s) | 2058, 2426, 2829, 3353, 3928 |
| BsmI | GAATGC | 2 cut(s) | 300, 2197 |
| BsnI | GGCC | 7 cut(s) | 393, 1031, 1370, 1952, 2283, 3086, 3446 |
| Bso31I | GGTCTC | 2 cut(s) | 419, 3251 |
| BsoBI | CYCGRG | 2 cut(s) | 2119, 3528 |
| Bsp120I | GGGCCC | 1 cut(s) | 1950 |
| Bsp1286I | GDGCHC | 7 cut(s) | 20, 485, 1954, 3352, 3718, 3947, 4182 |
| Bsp13I | TCCGGA | 1 cut(s) | 3283 |
| Bsp1407I | TGTACA | 2 cut(s) | 1264, 2746 |
| BspANI | GGCC | 7 cut(s) | 393, 1031, 1370, 1952, 2283, 3086, 3446 |
| BspCNI | CTCAG | 7 cut(s) | 770, 1030, 1071, 2627, 2909, 3435, 3673 |
| BspEI | TCCGGA | 1 cut(s) | 3283 |
| BspFNI | CGCG | 1 cut(s) | 1482 |
| BspHI | TCATGA | 2 cut(s) | 2842, 3151 |
| BspOI | GCTAGC | 1 cut(s) | 977 |
| BspPI | GGATC | 9 cut(s) | 1077, 1416, 1729, 1970, 2627, 2969, 3018, 3737, 4049 |
| BspQI | GCTCTTC | 1 cut(s) | 1017 |
| BspT107I | GGYRCC | 1 cut(s) | 3623 |
| BspTI | CTTAAG | 1 cut(s) | 1540 |
| BspTNI | GGTCTC | 2 cut(s) | 419, 3251 |
| BsrBI | CCGCTC | 1 cut(s) | 1547 |
| BsrDI | GCAATG | 2 cut(s) | 1294, 2781 |
| BsrGI | TGTACA | 2 cut(s) | 1264, 2746 |
| BssECI | CCNNGG | 4 cut(s) | 1047, 3294, 3717, 3886 |
| BssNAI | GTATAC | 1 cut(s) | 932 |
| BssT1I | CCWWGG | 2 cut(s) | 3294, 3886 |
| Bst1107I | GTATAC | 1 cut(s) | 932 |
| Bst2UI | CCWGG | 6 cut(s) | 422, 1048, 2970, 3317, 3612, 3719 |
| Bst6I | CTCTTC | 5 cut(s) | 122, 707, 1017, 2092, 3845 |
| BstAFI | CTTAAG | 1 cut(s) | 1540 |
| BstAUI | TGTACA | 2 cut(s) | 1264, 2746 |
| BstC8I | GCNNGC | 7 cut(s) | 527, 975, 979, 1842, 1893, 2904, 4192 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1276, 3885 |
| BstFNI | CGCG | 1 cut(s) | 1482 |
| BstHHI | GCGC | 1 cut(s) | 1484 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 43, 160, 1240, 1901 |
| BstNI | CCWGG | 6 cut(s) | 422, 1048, 2970, 3317, 3612, 3719 |
| BstNSI | RCATGY | 2 cut(s) | 1271, 3569 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2070 |
| BstSCI | CCNGG | 9 cut(s) | 115, 420, 546, 684, 1046, 2968, 3315, 3610, 3717 |
| BstSFI | CTRYAG | 1 cut(s) | 2820 |
| BstSLI | GKGCMC | 1 cut(s) | 1954 |
| BstUI | CGCG | 1 cut(s) | 1482 |
| BstV1I | GCAGC | 6 cut(s) | 160, 309, 3319, 3473, 3586, 3608 |
| BstV2I | GAAGAC | 7 cut(s) | 959, 1104, 1869, 2249, 3083, 3185, 3681 |
| BstX2I | RGATCY | 2 cut(s) | 2974, 3010 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1984, 2101, 4065 |
| BstYI | RGATCY | 2 cut(s) | 2974, 3010 |
| BstZ17I | GTATAC | 1 cut(s) | 932 |
| BsuI | GTATCC | 1 cut(s) | 1386 |
| BsuRI | GGCC | 7 cut(s) | 393, 1031, 1370, 1952, 2283, 3086, 3446 |
| BtrI | CACGTC | 1 cut(s) | 3679 |
| BtsI | GCAGTG | 1 cut(s) | 3900 |
| BtsIMutI | CAGTG | 9 cut(s) | 354, 1221, 1858, 2400, 2499, 3080, 3166, 3900, 3906 |
| Cac8I | GCNNGC | 7 cut(s) | 527, 975, 979, 1842, 1893, 2904, 4192 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2501, 3013, 3464 |
| CciI | TCATGA | 2 cut(s) | 2842, 3151 |
| CfoI | GCGC | 1 cut(s) | 1484 |
| Csp6I | GTAC | 8 cut(s) | 852, 1265, 1709, 2297, 2747, 3642, 3664, 3828 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1969, 2004 |
| CviQI | GTAC | 8 cut(s) | 852, 1265, 1709, 2297, 2747, 3642, 3664, 3828 |
| DraI | TTTAAA | 2 cut(s) | 1605, 1669 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2530 |
| EaeI | YGGCCR | 2 cut(s) | 2281, 3084 |
| Eam1104I | CTCTTC | 5 cut(s) | 122, 707, 1017, 2092, 3845 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2530 |
| EarI | CTCTTC | 5 cut(s) | 122, 707, 1017, 2092, 3845 |
| Ecl136II | GAGCTC | 1 cut(s) | 3350 |
| Eco130I | CCWWGG | 2 cut(s) | 3294, 3886 |
| Eco24I | GRGCYC | 5 cut(s) | 485, 1954, 3352, 3718, 4182 |
| Eco31I | GGTCTC | 2 cut(s) | 419, 3251 |
| Eco47I | GGWCC | 9 cut(s) | 418, 989, 1195, 1344, 2440, 2816, 3125, 3340, 3721 |
| Eco53kI | GAGCTC | 1 cut(s) | 3350 |
| Eco57I | CTGAAG | 6 cut(s) | 945, 956, 2424, 2990, 3201, 3405 |
| Eco88I | CYCGRG | 2 cut(s) | 2119, 3528 |
| EcoICRI | GAGCTC | 1 cut(s) | 3350 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1276, 3885 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1344, 1951, 2440, 2816, 3340, 3444 |
| EcoRI | GAATTC | 2 cut(s) | 56, 3276 |
| EcoRII | CCWGG | 6 cut(s) | 420, 1046, 2968, 3315, 3610, 3717 |
| EcoT14I | CCWWGG | 2 cut(s) | 3294, 3886 |
| EcoT22I | ATGCAT | 1 cut(s) | 2082 |
| EcoT38I | GRGCYC | 5 cut(s) | 485, 1954, 3352, 3718, 4182 |
| ErhI | CCWWGG | 2 cut(s) | 3294, 3886 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 65, 97, 628, 660, 2988, 3020, 3246, 3278 |
| FaqI | GGGAC | 5 cut(s) | 2058, 2426, 2829, 3353, 3928 |
| FauI | CCCGC | 1 cut(s) | 214 |
| FauNDI | CATATG | 3 cut(s) | 1108, 2010, 2410 |
| FbaI | TGATCA | 2 cut(s) | 2287, 2778 |
| FblI | GTMKAC | 1 cut(s) | 931 |
| Fnu4HI | GCNGC | 9 cut(s) | 174, 298, 575, 1734, 3087, 3308, 3462, 3597, 3600 |
| FriOI | GRGCYC | 5 cut(s) | 485, 1954, 3352, 3718, 4182 |
| Fsp4HI | GCNGC | 9 cut(s) | 174, 298, 575, 1734, 3087, 3308, 3462, 3597, 3600 |
| FspBI | CTAG | 5 cut(s) | 138, 974, 1898, 2021, 2354 |
| GlaI | GCGC | 1 cut(s) | 1483 |
| GluI | GCNGC | 9 cut(s) | 174, 298, 575, 1734, 3087, 3308, 3462, 3597, 3600 |
| GsaI | CCCAGC | 2 cut(s) | 948, 1238 |
| GsuI | CTGGAG | 1 cut(s) | 2928 |
| HaeIII | GGCC | 7 cut(s) | 393, 1031, 1370, 1952, 2283, 3086, 3446 |
| HapII | CCGG | 5 cut(s) | 117, 547, 685, 1032, 3284 |
| HhaI | GCGC | 1 cut(s) | 1484 |
| Hin6I | GCGC | 1 cut(s) | 1482 |
| HinP1I | GCGC | 1 cut(s) | 1482 |
| HindIII | AAGCTT | 1 cut(s) | 4192 |
| HpaII | CCGG | 5 cut(s) | 117, 547, 685, 1032, 3284 |
| HphI | GGTGA | 9 cut(s) | 737, 785, 1097, 1220, 1863, 2228, 2534, 3028, 3181 |
| Hpy166II | GTNNAC | 4 cut(s) | 932, 1946, 2369, 2950 |
| Hpy8I | GTNNAC | 4 cut(s) | 932, 1946, 2369, 2950 |
| HpyCH4IV | ACGT | 5 cut(s) | 2548, 3550, 3678, 3739, 4154 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 43, 160, 1240, 1901 |
| HpySE526I | ACGT | 5 cut(s) | 2548, 3550, 3678, 3739, 4154 |
| HspAI | GCGC | 1 cut(s) | 1482 |
| Kpn2I | TCCGGA | 1 cut(s) | 3283 |
| Ksp22I | TGATCA | 2 cut(s) | 2287, 2778 |
| LguI | GCTCTTC | 1 cut(s) | 1017 |
| LmnI | GCTCC | 9 cut(s) | 382, 480, 687, 1566, 2654, 2668, 3062, 3713, 3890 |
| Lsp1109I | GCAGC | 6 cut(s) | 160, 309, 3319, 3473, 3586, 3608 |
| MaeI | CTAG | 5 cut(s) | 138, 974, 1898, 2021, 2354 |
| MaeII | ACGT | 5 cut(s) | 2548, 3550, 3678, 3739, 4154 |
| MaeIII | GTNAC | 5 cut(s) | 140, 2522, 3169, 3568, 3895 |
| MbiI | CCGCTC | 1 cut(s) | 1547 |
| MflI | RGATCY | 2 cut(s) | 2974, 3010 |
| MhlI | GDGCHC | 7 cut(s) | 20, 485, 1954, 3352, 3718, 3947, 4182 |
| MlsI | TGGCCA | 1 cut(s) | 2283 |
| MluNI | TGGCCA | 1 cut(s) | 2283 |
| MmeI | TCCRAC | 3 cut(s) | 225, 2001, 3053 |
| Mox20I | TGGCCA | 1 cut(s) | 2283 |
| Mph1103I | ATGCAT | 1 cut(s) | 2082 |
| MroI | TCCGGA | 1 cut(s) | 3283 |
| MroXI | GAANNNNTTC | 2 cut(s) | 80, 1386 |
| MscI | TGGCCA | 1 cut(s) | 2283 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1272, 3970, 4050 |
| Msp20I | TGGCCA | 1 cut(s) | 2283 |
| MspA1I | CMGCKG | 3 cut(s) | 2762, 3464, 3599 |
| MspCI | CTTAAG | 1 cut(s) | 1540 |
| MspI | CCGG | 5 cut(s) | 117, 547, 685, 1032, 3284 |
| MspR9I | CCNGG | 9 cut(s) | 117, 422, 548, 686, 1048, 2970, 3317, 3612, 3719 |
| Mva1269I | GAATGC | 2 cut(s) | 300, 2197 |
| MvaI | CCWGG | 6 cut(s) | 422, 1048, 2970, 3317, 3612, 3719 |
| MvnI | CGCG | 1 cut(s) | 1482 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 43, 160, 1240, 1901 |
| NciI | CCSGG | 3 cut(s) | 117, 548, 686 |
| NdeI | CATATG | 3 cut(s) | 1108, 2010, 2410 |
| NheI | GCTAGC | 1 cut(s) | 973 |
| NmeAIII | GCCGAG | 2 cut(s) | 555, 3898 |
| NmuCI | GTSAC | 4 cut(s) | 140, 2522, 3169, 3895 |
| NsiI | ATGCAT | 1 cut(s) | 2082 |
| NspI | RCATGY | 2 cut(s) | 1271, 3569 |
| PaeR7I | CTCGAG | 1 cut(s) | 3528 |
| PagI | TCATGA | 2 cut(s) | 2842, 3151 |
| PciI | ACATGT | 1 cut(s) | 3565 |
| PciSI | GCTCTTC | 1 cut(s) | 1017 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2428 |
| PctI | GAATGC | 2 cut(s) | 300, 2197 |
| PdmI | GAANNNNTTC | 2 cut(s) | 80, 1386 |
| PflFI | GACNNNGTC | 1 cut(s) | 2606 |
| PfoI | TCCNGGA | 1 cut(s) | 2968 |
| PkrI | GCNGC | 9 cut(s) | 175, 299, 576, 1735, 3088, 3309, 3463, 3598, 3601 |
| PpuMI | RGGWCCY | 4 cut(s) | 1344, 2440, 2816, 3340 |
| PscI | ACATGT | 1 cut(s) | 3565 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2070 |
| PshBI | ATTAAT | 1 cut(s) | 1217 |
| Psp124BI | GAGCTC | 1 cut(s) | 3352 |
| Psp1406I | AACGTT | 1 cut(s) | 4154 |
| Psp5II | RGGWCCY | 4 cut(s) | 1344, 2440, 2816, 3340 |
| Psp6I | CCWGG | 6 cut(s) | 420, 1046, 2968, 3315, 3610, 3717 |
| PspFI | CCCAGC | 2 cut(s) | 944, 1234 |
| PspGI | CCWGG | 6 cut(s) | 420, 1046, 2968, 3315, 3610, 3717 |
| PspOMI | GGGCCC | 1 cut(s) | 1950 |
| PspPPI | RGGWCCY | 4 cut(s) | 1344, 2440, 2816, 3340 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2847, 2879 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2501, 3013, 3464 |
| PsuI | RGATCY | 2 cut(s) | 2974, 3010 |
| PsyI | GACNNNGTC | 1 cut(s) | 2606 |
| PvuII | CAGCTG | 3 cut(s) | 2762, 3464, 3599 |
| RsaI | GTAC | 8 cut(s) | 853, 1266, 1710, 2298, 2748, 3643, 3665, 3829 |
| RsaNI | GTAC | 8 cut(s) | 852, 1265, 1709, 2297, 2747, 3642, 3664, 3828 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1272, 3970, 4050 |
| SacI | GAGCTC | 1 cut(s) | 3352 |
| SapI | GCTCTTC | 1 cut(s) | 1017 |
| SatI | GCNGC | 9 cut(s) | 174, 298, 575, 1734, 3087, 3308, 3462, 3597, 3600 |
| ScrFI | CCNGG | 9 cut(s) | 117, 422, 548, 686, 1048, 2970, 3317, 3612, 3719 |
| SduI | GDGCHC | 7 cut(s) | 20, 485, 1954, 3352, 3718, 3947, 4182 |
| SfcI | CTRYAG | 1 cut(s) | 2820 |
| Sfr274I | CTCGAG | 1 cut(s) | 3528 |
| SinI | GGWCC | 9 cut(s) | 418, 989, 1195, 1344, 2440, 2816, 3125, 3340, 3721 |
| SlaI | CTCGAG | 1 cut(s) | 3528 |
| SmiI | ATTTAAAT | 1 cut(s) | 1605 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1272, 3970, 4050 |
| SmlI | CTYRAG | 6 cut(s) | 370, 1339, 1540, 2987, 3528, 4183 |
| SmoI | CTYRAG | 6 cut(s) | 370, 1339, 1540, 2987, 3528, 4183 |
| SspI | AATATT | 2 cut(s) | 589, 697 |
| SspMI | CTAG | 5 cut(s) | 138, 974, 1898, 2021, 2354 |
| SstI | GAGCTC | 1 cut(s) | 3352 |
| StyD4I | CCNGG | 9 cut(s) | 115, 420, 546, 684, 1046, 2968, 3315, 3610, 3717 |
| StyI | CCWWGG | 2 cut(s) | 3294, 3886 |
| SwaI | ATTTAAAT | 1 cut(s) | 1605 |
| TaiI | ACGT | 5 cut(s) | 2551, 3553, 3681, 3742, 4157 |
| TatI | WGTACW | 5 cut(s) | 1264, 1708, 2746, 3641, 3663 |
| TauI | GCSGC | 3 cut(s) | 577, 1736, 3089 |
| TscAI | CASTG | 9 cut(s) | 354, 1228, 1858, 2407, 2506, 3087, 3166, 3900, 3906 |
| TseFI | GTSAC | 4 cut(s) | 140, 2522, 3169, 3895 |
| TseI | GCWGC | 6 cut(s) | 173, 297, 3307, 3461, 3596, 3599 |
| Tsp45I | GTSAC | 4 cut(s) | 140, 2522, 3169, 3895 |
| TspGWI | ACGGA | 2 cut(s) | 2179, 3395 |
| TspRI | CASTG | 9 cut(s) | 354, 1228, 1858, 2407, 2506, 3087, 3166, 3900, 3906 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2606 |
| Vha464I | CTTAAG | 1 cut(s) | 1540 |
| VpaK11BI | GGWCC | 9 cut(s) | 418, 989, 1195, 1344, 2440, 2816, 3125, 3340, 3721 |
| VspI | ATTAAT | 1 cut(s) | 1217 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1276, 3885 |
| XapI | RAATTY | 7 cut(s) | 56, 197, 559, 1664, 2625, 3276, 4123 |
| XbaI | TCTAGA | 2 cut(s) | 1897, 2020 |
| XceI | RCATGY | 2 cut(s) | 1271, 3569 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1858 |
| XhoI | CTCGAG | 1 cut(s) | 3528 |
| XmiI | GTMKAC | 1 cut(s) | 931 |
| XmnI | GAANNNNTTC | 2 cut(s) | 80, 1386 |
| XspI | CTAG | 5 cut(s) | 138, 974, 1898, 2021, 2354 |
| Zsp2I | ATGCAT | 1 cut(s) | 2082 |