protease binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G45830 |
| fragaria_vesca | FvH4_3g34430 FvH4_3g34430 |
| malus_domestica | MD03G1106200.v1.1 MD11G1118300.v1.1 |
| prunus_persica | Prupe.6G088700_v2.0.a1 |
| pyrus_communis | pycom03g08520 pycom11g09930 |
| rosa_chinensis | RchiOBHm_Chr5g0062031 |
| rosa_laevigata | RLG00000035527 |
| rosa_multiflora | Rmu_sc0002296.1_g000008 Rmu_sc0017669.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00018660 |
| rosa_rugosa | Rorug05G0345700 |
| rosa_samantha | Rh5AG407000 Rh5BG420300 Rh5CG444400 Rh5DG435700 |
| rosa_wichuraiana | Rw5G038350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1136 |
| AatII | GACGTC | 1 cut(s) | 4441 |
| Acc16I | TGCGCA | 1 cut(s) | 1857 |
| Acc36I | ACCTGC | 1 cut(s) | 4082 |
| AccB1I | GGYRCC | 2 cut(s) | 1378, 2726 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2327, 4420 |
| AccI | GTMKAC | 1 cut(s) | 721 |
| AcoI | YGGCCR | 4 cut(s) | 684, 840, 4329, 4600 |
| AcsI | RAATTY | 7 cut(s) | 499, 859, 1129, 1352, 1598, 1850, 2499 |
| AcyI | GRCGYC | 1 cut(s) | 4438 |
| AfaI | GTAC | 5 cut(s) | 2794, 3309, 3517, 3627, 3703 |
| AflII | CTTAAG | 1 cut(s) | 3217 |
| AflIII | ACRYGT | 1 cut(s) | 4070 |
| AgeI | ACCGGT | 1 cut(s) | 200 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3976, 4074 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3958, 3990, 4359, 4391 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 311, 343, 1044, 1076 |
| Alw21I | GWGCWC | 6 cut(s) | 2248, 2511, 3226, 3821, 4280, 4392 |
| Alw44I | GTGCAC | 2 cut(s) | 2244, 4388 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2480, 2887, 3311 |
| Ama87I | CYCGRG | 1 cut(s) | 3402 |
| ApaI | GGGCCC | 1 cut(s) | 4316 |
| ApaLI | GTGCAC | 2 cut(s) | 2244, 4388 |
| ApoI | RAATTY | 7 cut(s) | 499, 859, 1129, 1352, 1598, 1850, 2499 |
| AsiGI | ACCGGT | 1 cut(s) | 200 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 20, 2187, 2877 |
| AspA2I | CCTAGG | 1 cut(s) | 3760 |
| AspLEI | GCGC | 2 cut(s) | 1858, 2025 |
| AsuC2I | CCSGG | 6 cut(s) | 157, 163, 488, 626, 1220, 4107 |
| AvaI | CYCGRG | 1 cut(s) | 3402 |
| AvrII | CCTAGG | 1 cut(s) | 3760 |
| BaeGI | GKGCMC | 3 cut(s) | 2248, 4316, 4392 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3552, 3585 |
| BalI | TGGCCA | 3 cut(s) | 686, 842, 4331 |
| BamHI | GGATCC | 1 cut(s) | 4109 |
| BanI | GGYRCC | 2 cut(s) | 1378, 2726 |
| BanII | GRGCYC | 8 cut(s) | 425, 794, 1282, 2511, 3226, 3592, 4168, 4316 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2066, 2098 |
| BauI | CACGAG | 2 cut(s) | 1083, 4513 |
| BbsI | GAAGAC | 5 cut(s) | 1103, 1520, 3059, 3146, 3999 |
| Bbv12I | GWGCWC | 6 cut(s) | 2248, 2511, 3226, 3821, 4280, 4392 |
| BbvCI | CCTCAGC | 1 cut(s) | 1763 |
| BceAI | ACGGC | 1 cut(s) | 4615 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 229, 263, 749, 783, 3812, 3846 |
| BciVI | GTATCC | 2 cut(s) | 596, 1320 |
| BclI | TGATCA | 3 cut(s) | 1930, 3748, 4467 |
| BcnI | CCSGG | 6 cut(s) | 157, 163, 488, 626, 1220, 4107 |
| BfaI | CTAG | 4 cut(s) | 1212, 1832, 2163, 3761 |
| BfmI | CTRYAG | 4 cut(s) | 1552, 2083, 2332, 2694 |
| BfoI | RGCGCY | 1 cut(s) | 2026 |
| BfrI | CTTAAG | 1 cut(s) | 3217 |
| BfuAI | ACCTGC | 1 cut(s) | 4082 |
| BfuI | GTATCC | 2 cut(s) | 596, 1320 |
| BglII | AGATCT | 2 cut(s) | 2398, 4324 |
| BlnI | CCTAGG | 1 cut(s) | 3760 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3976, 4074 |
| BmeT110I | CYCGRG | 1 cut(s) | 3402 |
| BmrI | ACTGGG | 5 cut(s) | 1527, 1779, 1821, 2507, 2996 |
| BmuI | ACTGGG | 5 cut(s) | 1527, 1779, 1821, 2507, 2996 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2001, 4437 |
| BpiI | GAAGAC | 5 cut(s) | 1103, 1520, 3059, 3146, 3999 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1513, 1545, 4561, 4593 |
| BpmI | CTGGAG | 4 cut(s) | 61, 293, 2802, 4188 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1763 |
| BpuEI | CTTGAG | 5 cut(s) | 331, 368, 1907, 2132, 4004 |
| BpuMI | CCSGG | 6 cut(s) | 157, 163, 488, 626, 1220, 4107 |
| Bsa29I | ATCGAT | 2 cut(s) | 1072, 1396 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1588, 2397, 3918 |
| BsaHI | GRCGYC | 1 cut(s) | 4438 |
| BsaI | GGTCTC | 4 cut(s) | 55, 3023, 3125, 3984 |
| BsaJI | CCNNGG | 7 cut(s) | 156, 956, 2373, 3591, 3760, 4498, 4582 |
| BsaWI | WCCGGW | 2 cut(s) | 200, 1106 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 311, 341, 3759, 3789 |
| Bse118I | RCCGGY | 3 cut(s) | 200, 513, 4572 |
| Bse3DI | GCAATG | 2 cut(s) | 1613, 2655 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1588, 2397, 3918 |
| BseCI | ATCGAT | 2 cut(s) | 1072, 1396 |
| BseDI | CCNNGG | 7 cut(s) | 156, 956, 2373, 3591, 3760, 4498, 4582 |
| BseJI | GATNNNNATC | 3 cut(s) | 1588, 2397, 3918 |
| BseMI | GCAATG | 2 cut(s) | 1613, 2655 |
| BseMII | CTCAG | 9 cut(s) | 657, 1012, 1754, 2421, 2496, 3548, 3783, 3953, 4198 |
| BseSI | GKGCMC | 3 cut(s) | 2248, 4316, 4392 |
| BseYI | CCCAGC | 1 cut(s) | 2033 |
| BsgI | GTGCAG | 2 cut(s) | 3144, 4110 |
| Bsh1285I | CGRYCG | 2 cut(s) | 962, 3434 |
| BshNI | GGYRCC | 2 cut(s) | 1378, 2726 |
| BshTI | ACCGGT | 1 cut(s) | 200 |
| BshVI | ATCGAT | 2 cut(s) | 1072, 1396 |
| BsiEI | CGRYCG | 2 cut(s) | 962, 3434 |
| BsiHKAI | GWGCWC | 6 cut(s) | 2248, 2511, 3226, 3821, 4280, 4392 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3402 |
| BslFI | GGGAC | 5 cut(s) | 1989, 2130, 2303, 2419, 3227 |
| BsmBI | CGTCTC | 3 cut(s) | 359, 1086, 3459 |
| BsmFI | GGGAC | 5 cut(s) | 1989, 2130, 2303, 2419, 3227 |
| BsmI | GAATGC | 3 cut(s) | 240, 2104, 2856 |
| Bso31I | GGTCTC | 4 cut(s) | 55, 3023, 3125, 3984 |
| BsoBI | CYCGRG | 1 cut(s) | 3402 |
| Bsp120I | GGGCCC | 1 cut(s) | 4312 |
| Bsp1407I | TGTACA | 1 cut(s) | 3625 |
| Bsp19I | CCATGG | 1 cut(s) | 2373 |
| BspCNI | CTCAG | 9 cut(s) | 658, 1011, 1755, 2422, 2497, 3547, 3784, 3954, 4197 |
| BspDI | ATCGAT | 2 cut(s) | 1072, 1396 |
| BspHI | TCATGA | 2 cut(s) | 2191, 2746 |
| BspMAI | CTGCAG | 1 cut(s) | 2336 |
| BspMI | ACCTGC | 1 cut(s) | 4082 |
| BspT107I | GGYRCC | 2 cut(s) | 1378, 2726 |
| BspTI | CTTAAG | 1 cut(s) | 3217 |
| BspTNI | GGTCTC | 4 cut(s) | 55, 3023, 3125, 3984 |
| BsrDI | GCAATG | 2 cut(s) | 1613, 2655 |
| BsrFI | RCCGGY | 3 cut(s) | 200, 513, 4572 |
| BsrGI | TGTACA | 1 cut(s) | 3625 |
| BssAI | RCCGGY | 3 cut(s) | 200, 513, 4572 |
| BssECI | CCNNGG | 7 cut(s) | 156, 956, 2373, 3591, 3760, 4498, 4582 |
| BssNI | GRCGYC | 1 cut(s) | 4438 |
| BssSI | CACGAG | 2 cut(s) | 1083, 4513 |
| BssT1I | CCWWGG | 3 cut(s) | 2373, 3760, 4582 |
| Bst2BI | CACGAG | 2 cut(s) | 1083, 4513 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 647, 3719 |
| BstACI | GRCGYC | 1 cut(s) | 4438 |
| BstAFI | CTTAAG | 1 cut(s) | 3217 |
| BstAUI | TGTACA | 1 cut(s) | 3625 |
| BstC8I | GCNNGC | 8 cut(s) | 467, 1094, 1203, 1881, 2778, 3602, 3992, 4574 |
| BstDSI | CCRYGG | 1 cut(s) | 2373 |
| BstEII | GGTNACC | 1 cut(s) | 822 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1386 |
| BstH2I | RGCGCY | 1 cut(s) | 2026 |
| BstHHI | GCGC | 2 cut(s) | 1858, 2025 |
| BstMCI | CGRYCG | 2 cut(s) | 962, 3434 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 100, 1844, 1853, 3610, 3752, 4578 |
| BstNSI | RCATGY | 5 cut(s) | 1096, 1205, 2780, 3443, 4074 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2001, 4437 |
| BstPI | GGTNACC | 1 cut(s) | 822 |
| BstSFI | CTRYAG | 4 cut(s) | 1552, 2083, 2332, 2694 |
| BstSLI | GKGCMC | 3 cut(s) | 2248, 4316, 4392 |
| BstV2I | GAAGAC | 5 cut(s) | 1103, 1520, 3059, 3146, 3999 |
| BstX2I | RGATCY | 7 cut(s) | 2255, 2398, 2848, 2884, 3788, 4109, 4324 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1915 |
| BstYI | RGATCY | 7 cut(s) | 2255, 2398, 2848, 2884, 3788, 4109, 4324 |
| Bsu15I | ATCGAT | 2 cut(s) | 1072, 1396 |
| BsuI | GTATCC | 2 cut(s) | 596, 1320 |
| BsuTUI | ATCGAT | 2 cut(s) | 1072, 1396 |
| BtgI | CCRYGG | 1 cut(s) | 2373 |
| BtsI | GCAGTG | 2 cut(s) | 1341, 2431 |
| BveI | ACCTGC | 1 cut(s) | 4082 |
| Cac8I | GCNNGC | 8 cut(s) | 467, 1094, 1203, 1881, 2778, 3602, 3992, 4574 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2480, 2887, 3311 |
| CciI | TCATGA | 2 cut(s) | 2191, 2746 |
| CfoI | GCGC | 2 cut(s) | 1858, 2025 |
| Cfr10I | RCCGGY | 3 cut(s) | 200, 513, 4572 |
| ClaI | ATCGAT | 2 cut(s) | 1072, 1396 |
| CseI | GACGC | 3 cut(s) | 1068, 3476, 3935 |
| CsiI | ACCWGGT | 1 cut(s) | 2119 |
| Csp6I | GTAC | 5 cut(s) | 2793, 3308, 3516, 3626, 3702 |
| CspAI | ACCGGT | 1 cut(s) | 200 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 4290, 4321, 4325, 4356 |
| CviQI | GTAC | 5 cut(s) | 2793, 3308, 3516, 3626, 3702 |
| DraI | TTTAAA | 1 cut(s) | 1539 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3976, 4074 |
| EaeI | YGGCCR | 4 cut(s) | 684, 840, 4329, 4600 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 647, 3719 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3976, 4074 |
| EarI | CTCTTC | 3 cut(s) | 62, 647, 3719 |
| EciI | GGCGGA | 1 cut(s) | 4394 |
| Ecl136II | GAGCTC | 2 cut(s) | 2509, 3224 |
| Eco130I | CCWWGG | 3 cut(s) | 2373, 3760, 4582 |
| Eco24I | GRGCYC | 8 cut(s) | 425, 794, 1282, 2511, 3226, 3592, 4168, 4316 |
| Eco31I | GGTCTC | 4 cut(s) | 55, 3023, 3125, 3984 |
| Eco53kI | GAGCTC | 2 cut(s) | 2509, 3224 |
| Eco88I | CYCGRG | 1 cut(s) | 3402 |
| Eco91I | GGTNACC | 1 cut(s) | 822 |
| EcoICRI | GAGCTC | 2 cut(s) | 2509, 3224 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1386 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1882, 2117, 2317, 3318, 4313, 4502 |
| EcoO65I | GGTNACC | 1 cut(s) | 822 |
| EcoRI | GAATTC | 1 cut(s) | 859 |
| EcoT14I | CCWWGG | 3 cut(s) | 2373, 3760, 4582 |
| EcoT22I | ATGCAT | 1 cut(s) | 2625 |
| EcoT38I | GRGCYC | 8 cut(s) | 425, 794, 1282, 2511, 3226, 3592, 4168, 4316 |
| ErhI | CCWWGG | 3 cut(s) | 2373, 3760, 4582 |
| Esp3I | CGTCTC | 3 cut(s) | 359, 1086, 3459 |
| FalI | AAGNNNNNCTT | 7 cut(s) | 37, 568, 600, 1353, 1385, 2862, 2894 |
| FaqI | GGGAC | 5 cut(s) | 1989, 2130, 2303, 2419, 3227 |
| FauI | CCCGC | 1 cut(s) | 1572 |
| FauNDI | CATATG | 3 cut(s) | 781, 1048, 1285 |
| FbaI | TGATCA | 3 cut(s) | 1930, 3748, 4467 |
| FblI | GTMKAC | 1 cut(s) | 721 |
| FriOI | GRGCYC | 8 cut(s) | 425, 794, 1282, 2511, 3226, 3592, 4168, 4316 |
| FspBI | CTAG | 4 cut(s) | 1212, 1832, 2163, 3761 |
| FspI | TGCGCA | 1 cut(s) | 1857 |
| GlaI | GCGC | 2 cut(s) | 1857, 2024 |
| GsaI | CCCAGC | 1 cut(s) | 2037 |
| GsuI | CTGGAG | 4 cut(s) | 61, 293, 2802, 4188 |
| HaeII | RGCGCY | 1 cut(s) | 2026 |
| HgaI | GACGC | 3 cut(s) | 1068, 3476, 3935 |
| HhaI | GCGC | 2 cut(s) | 1858, 2025 |
| Hin1I | GRCGYC | 1 cut(s) | 4438 |
| Hin6I | GCGC | 2 cut(s) | 1856, 2023 |
| HinP1I | GCGC | 2 cut(s) | 1856, 2023 |
| HindIII | AAGCTT | 3 cut(s) | 968, 3270, 3992 |
| Hpy166II | GTNNAC | 5 cut(s) | 722, 2246, 3626, 4156, 4390 |
| Hpy8I | GTNNAC | 5 cut(s) | 722, 2246, 3626, 4156, 4390 |
| Hpy99I | CGWCG | 2 cut(s) | 4440, 4443 |
| HpyCH4IV | ACGT | 6 cut(s) | 368, 3189, 3424, 3903, 4438, 4488 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 100, 1844, 1853, 3610, 3752, 4578 |
| HpySE526I | ACGT | 6 cut(s) | 368, 3189, 3424, 3903, 4438, 4488 |
| Hsp92I | GRCGYC | 1 cut(s) | 4438 |
| HspAI | GCGC | 2 cut(s) | 1856, 2023 |
| KroI | GCCGGC | 1 cut(s) | 4572 |
| KroNI | GCCGGC | 1 cut(s) | 4574 |
| Ksp22I | TGATCA | 3 cut(s) | 1930, 3748, 4467 |
| MabI | ACCWGGT | 1 cut(s) | 2119 |
| MaeI | CTAG | 4 cut(s) | 1212, 1832, 2163, 3761 |
| MaeII | ACGT | 6 cut(s) | 368, 3189, 3424, 3903, 4438, 4488 |
| MflI | RGATCY | 7 cut(s) | 2255, 2398, 2848, 2884, 3788, 4109, 4324 |
| MlsI | TGGCCA | 3 cut(s) | 686, 842, 4331 |
| MluNI | TGGCCA | 3 cut(s) | 686, 842, 4331 |
| MmeI | TCCRAC | 7 cut(s) | 18, 147, 165, 1218, 2927, 3163, 4401 |
| Mox20I | TGGCCA | 3 cut(s) | 686, 842, 4331 |
| Mph1103I | ATGCAT | 1 cut(s) | 2625 |
| MroNI | GCCGGC | 1 cut(s) | 4572 |
| MroXI | GAANNNNTTC | 3 cut(s) | 20, 2187, 2877 |
| MscI | TGGCCA | 3 cut(s) | 686, 842, 4331 |
| MseI | TTAA | 8 cut(s) | 591, 1166, 1538, 1695, 2579, 3218, 3237, 3828 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1206, 2378 |
| Msp20I | TGGCCA | 3 cut(s) | 686, 842, 4331 |
| MspA1I | CMGCKG | 3 cut(s) | 947, 3338, 3473 |
| MspCI | CTTAAG | 1 cut(s) | 3217 |
| Mva1269I | GAATGC | 3 cut(s) | 240, 2104, 2856 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 100, 1844, 1853, 3610, 3752, 4578 |
| NaeI | GCCGGC | 1 cut(s) | 4574 |
| NciI | CCSGG | 6 cut(s) | 157, 163, 488, 626, 1220, 4107 |
| NcoI | CCATGG | 1 cut(s) | 2373 |
| NdeI | CATATG | 3 cut(s) | 781, 1048, 1285 |
| NgoMIV | GCCGGC | 1 cut(s) | 4572 |
| NmuCI | GTSAC | 6 cut(s) | 80, 689, 822, 2341, 3769, 4076 |
| NsbI | TGCGCA | 1 cut(s) | 1857 |
| NsiI | ATGCAT | 1 cut(s) | 2625 |
| NspI | RCATGY | 5 cut(s) | 1096, 1205, 2780, 3443, 4074 |
| PaeI | GCATGC | 3 cut(s) | 1096, 1205, 2780 |
| PagI | TCATGA | 2 cut(s) | 2191, 2746 |
| PciI | ACATGT | 1 cut(s) | 4070 |
| PctI | GAATGC | 3 cut(s) | 240, 2104, 2856 |
| PdiI | GCCGGC | 1 cut(s) | 4574 |
| PdmI | GAANNNNTTC | 3 cut(s) | 20, 2187, 2877 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2327, 4420 |
| PfoI | TCCNGGA | 4 cut(s) | 925, 1312, 2842, 4105 |
| PinAI | ACCGGT | 1 cut(s) | 200 |
| PpuMI | RGGWCCY | 3 cut(s) | 2117, 2317, 4502 |
| PscI | ACATGT | 1 cut(s) | 4070 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2001, 4437 |
| PsiI | TTATAA | 1 cut(s) | 1136 |
| Psp124BI | GAGCTC | 2 cut(s) | 2511, 3226 |
| Psp5II | RGGWCCY | 3 cut(s) | 2117, 2317, 4502 |
| PspEI | GGTNACC | 1 cut(s) | 822 |
| PspFI | CCCAGC | 1 cut(s) | 2033 |
| PspOMI | GGGCCC | 1 cut(s) | 4312 |
| PspPPI | RGGWCCY | 3 cut(s) | 2117, 2317, 4502 |
| PstI | CTGCAG | 1 cut(s) | 2336 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2480, 2887, 3311 |
| PsuI | RGATCY | 7 cut(s) | 2255, 2398, 2848, 2884, 3788, 4109, 4324 |
| PvuII | CAGCTG | 3 cut(s) | 947, 3338, 3473 |
| RsaI | GTAC | 5 cut(s) | 2794, 3309, 3517, 3627, 3703 |
| RsaNI | GTAC | 5 cut(s) | 2793, 3308, 3516, 3626, 3702 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1206, 2378 |
| SacI | GAGCTC | 2 cut(s) | 2511, 3226 |
| SaqAI | TTAA | 8 cut(s) | 591, 1166, 1538, 1695, 2579, 3218, 3237, 3828 |
| SexAI | ACCWGGT | 1 cut(s) | 2119 |
| SfcI | CTRYAG | 4 cut(s) | 1552, 2083, 2332, 2694 |
| SgrAI | CRCCGGYG | 1 cut(s) | 513 |
| SmiI | ATTTAAAT | 1 cut(s) | 1539 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1206, 2378 |
| SmlI | CTYRAG | 6 cut(s) | 310, 383, 1886, 2147, 3217, 3983 |
| SmoI | CTYRAG | 6 cut(s) | 310, 383, 1886, 2147, 3217, 3983 |
| SphI | GCATGC | 3 cut(s) | 1096, 1205, 2780 |
| SspI | AATATT | 1 cut(s) | 1321 |
| SspMI | CTAG | 4 cut(s) | 1212, 1832, 2163, 3761 |
| SstI | GAGCTC | 2 cut(s) | 2511, 3226 |
| StyI | CCWWGG | 3 cut(s) | 2373, 3760, 4582 |
| SwaI | ATTTAAAT | 1 cut(s) | 1539 |
| TaiI | ACGT | 6 cut(s) | 371, 3192, 3427, 3906, 4441, 4491 |
| TaqII | GACCGA | 2 cut(s) | 948, 4449 |
| TatI | WGTACW | 2 cut(s) | 3515, 3625 |
| TauI | GCSGC | 2 cut(s) | 240, 3439 |
| Tru1I | TTAA | 8 cut(s) | 591, 1166, 1538, 1695, 2579, 3218, 3237, 3828 |
| Tru9I | TTAA | 8 cut(s) | 591, 1166, 1538, 1695, 2579, 3218, 3237, 3828 |
| TseFI | GTSAC | 6 cut(s) | 80, 689, 822, 2341, 3769, 4076 |
| Tsp45I | GTSAC | 6 cut(s) | 80, 689, 822, 2341, 3769, 4076 |
| TspGWI | ACGGA | 2 cut(s) | 739, 3269 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2327, 4420 |
| Vha464I | CTTAAG | 1 cut(s) | 3217 |
| VneI | GTGCAC | 2 cut(s) | 2244, 4388 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1386 |
| XapI | RAATTY | 7 cut(s) | 499, 859, 1129, 1352, 1598, 1850, 2499 |
| XbaI | TCTAGA | 1 cut(s) | 1831 |
| XceI | RCATGY | 5 cut(s) | 1096, 1205, 2780, 3443, 4074 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1792 |
| XmaJI | CCTAGG | 1 cut(s) | 3760 |
| XmiI | GTMKAC | 1 cut(s) | 721 |
| XmnI | GAANNNNTTC | 3 cut(s) | 20, 2187, 2877 |
| XspI | CTAG | 4 cut(s) | 1212, 1832, 2163, 3761 |
| ZraI | GACGTC | 1 cut(s) | 4439 |
| Zsp2I | ATGCAT | 1 cut(s) | 2625 |