Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016293

Physical Location & Seq

Genomic Coordinates Reverse (-)

30948137 .. 30950034

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATCGAGGTCCCAAACAAAACCCTCGTCGATCACCAAGAATCCAATCAAGAACAAGAGGCATGCCCATTTTCATTCTCAAACTCAGATTGGTTTGCCTATCTCTGCTCTCCCACCCAATTTCATTCTGTGGTTGTGCCTCAAAACCCTTATGAGTTTAGAGTCCAGGTGATTAGGGTTTTGCCTCAGCATTTCTTGTGTGCCAAGTTGATGCGAGGTCCGGAACCCTATGTCACTTTGTGCACTTATTCGTGTAGTGAGAATTCTCTTGATGATGTGCCTAAAATGAACTGTGAGGATCGCAATCTGTTTAGATCTGCCTGTGCTATTCTTGATGGATGGATTTACGTTGTTGGTGGGTATAAGCGTAGCTCTTTAGATGCTAGCTTACCAATGGTAACCAAAACACTACCGATTAGTGCGAGTTTTAGCAAGCGATTTTCAATTCTAGCGATTGGTGAAATACCTAAAGAAGAGGTGGCAAAGGCGCGCGGCATAGGTTGTCTTTGCACCATGTCGGGACGCATGAAGGCTCAAGCAAGGACAAGCTCTAGTAGGATGGGAAAGTTGGTATGCGGCAACGATCTAAGCCAAAAGAAGGAAGGCGGCATGGACCCCAAAGGCTCGGGTGCTATGAAGGTGCGAGAAGGGTGCAAGAAAGGTGCGCTGCAGGGTGCTCGGCATGGTGAGCGAAAGGGTGCGCGCGGATGCACTCTAGGGTGCATACGTGTGCTGGCGGTTACAAGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1

Protein Analysis

251

Amino Acids

27.37

Weight (kDa)

9.03

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36100
prunus_persica	Prupe.6G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0064521
rosa_laevigata	RLG00000035731
rosa_multiflora	Rmu_sc0003352.1_g000003 Rmu_sc0018367.1_g000005 Rmu_sc0021484.1_g000003 Rmu_ssc0000127.1_g000048
rosa_roxburghii	Rroxscaffold_1G00016500
rosa_rugosa	Rorug05G0365900
rosa_samantha	Rh5AG423800 Rh5BG439200 Rh5CG461800 Rh5DG452500
rosa_wichuraiana	Rw5G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	490, 492, 703, 705
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	6 cut(s)	492, 576, 606, 705, 737, 747
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	262
AdeI	CACNNNGTG	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	1 cut(s)	444
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	372, 387, 549
AluI	AGCT	3 cut(s)	372, 387, 549
Alw21I	GWGCWC	2 cut(s)	245, 679
Alw44I	GTGCAC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	625
Aor13HI	TCCGGA	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	667
ApoI	RAATTY	1 cut(s)	262
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspLEI	GCGC	5 cut(s)	490, 492, 667, 703, 705
AspS9I	GGNCC	3 cut(s)	10, 218, 613
AsuHPI	GGTGA	4 cut(s)	26, 181, 470, 698
AsuNHI	GCTAGC	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	3 cut(s)	10, 218, 613
BaeGI	GKGCMC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	245, 679
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	654
BccI	CCATC	3 cut(s)	329, 333, 553
BcgI	CGANNNNNNTGC	4 cut(s)	633, 659, 667, 693
BciT130I	CCWGG	1 cut(s)	167
BfaI	CTAG	4 cut(s)	384, 449, 552, 716
BfmI	CTRYAG	1 cut(s)	668
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	4 cut(s)	493, 577, 607, 668
BlsI	GCNGC	4 cut(s)	494, 578, 608, 669
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	3 cut(s)	10, 218, 613
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	3 cut(s)	10, 218, 613
BmiI	GGNNCC	3 cut(s)	12, 225, 615
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	201, 370, 698
BmtI	GCTAGC	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	519
BsaAI	YACGTR	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	167
BseGI	GGATG	3 cut(s)	344, 564, 713
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	2 cut(s)	99, 200
BsePI	GCGCGC	2 cut(s)	488, 701
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	654
Bsh1236I	CGCG	4 cut(s)	490, 492, 703, 705
BsiHKAI	GWGCWC	2 cut(s)	245, 679
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	534
BsoBI	CYCGRG	1 cut(s)	625
Bsp1286I	GDGCHC	2 cut(s)	245, 679
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	5 cut(s)	3, 31, 298, 314, 583
BspACI	CCGC	6 cut(s)	492, 576, 606, 705, 737, 747
BspCNI	CTCAG	2 cut(s)	98, 199
BspEI	TCCGGA	1 cut(s)	220
BspFNI	CGCG	4 cut(s)	490, 492, 703, 705
BspLI	GGNNCC	3 cut(s)	12, 225, 615
BspMAI	CTGCAG	1 cut(s)	672
BspOI	GCTAGC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	306
BssHII	GCGCGC	2 cut(s)	488, 701
BssMI	GATC	5 cut(s)	3, 31, 298, 314, 583
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	6 cut(s)	64, 385, 434, 490, 703, 735
BstDEI	CTNAG	3 cut(s)	85, 186, 587
BstEII	GGTNACC	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	344, 564, 713
BstFNI	CGCG	4 cut(s)	490, 492, 703, 705
BstHHI	GCGC	5 cut(s)	490, 492, 667, 703, 705
BstKTI	GATC	5 cut(s)	6, 34, 301, 317, 586
BstMBI	GATC	5 cut(s)	3, 31, 298, 314, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	688
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	66
BstPI	GGTNACC	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	668
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	4 cut(s)	490, 492, 703, 705
BstV1I	GCAGC	1 cut(s)	654
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BtsCI	GGATG	3 cut(s)	344, 564, 713
Cac8I	GCNNGC	6 cut(s)	64, 385, 434, 490, 703, 735
CfoI	GCGC	5 cut(s)	490, 492, 667, 703, 705
Cfr13I	GGNCC	3 cut(s)	10, 218, 613
CseI	GACGC	1 cut(s)	531
CviAII	CATG	5 cut(s)	63, 514, 526, 610, 683
CviJI	RGCY	6 cut(s)	372, 387, 533, 549, 591, 624
CviKI_1	RGCY	6 cut(s)	372, 387, 533, 549, 591, 624
DdeI	CTNAG	3 cut(s)	85, 186, 587
DpnI	GATC	5 cut(s)	5, 33, 300, 316, 585
DpnII	GATC	5 cut(s)	3, 31, 298, 314, 583
DraIII	CACNNNGTG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco47I	GGWCC	3 cut(s)	10, 218, 613
Eco88I	CYCGRG	1 cut(s)	625
Eco91I	GGTNACC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	66, 517, 529, 613, 686
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	5 cut(s)	62, 513, 525, 609, 682
Fnu4HI	GCNGC	4 cut(s)	493, 577, 607, 668
FokI	GGATG	3 cut(s)	351, 571, 720
Fsp4HI	GCNGC	4 cut(s)	493, 577, 607, 668
FspBI	CTAG	4 cut(s)	384, 449, 552, 716
GlaI	GCGC	5 cut(s)	489, 491, 666, 702, 704
GluI	GCNGC	4 cut(s)	493, 577, 607, 668
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	531
HhaI	GCGC	5 cut(s)	490, 492, 667, 703, 705
Hin1II	CATG	5 cut(s)	66, 517, 529, 613, 686
Hin6I	GCGC	5 cut(s)	488, 490, 665, 701, 703
HinP1I	GCGC	5 cut(s)	488, 490, 665, 701, 703
HinfI	GANTC	2 cut(s)	41, 162
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	4 cut(s)	26, 181, 470, 698
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	5 cut(s)	50, 221, 269, 332, 519
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	5 cut(s)	523, 592, 596, 631, 641
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	348, 727
HpyCH4V	TGCA	6 cut(s)	243, 510, 654, 670, 711, 723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	688
HpyF3I	CTNAG	3 cut(s)	85, 186, 587
HpySE526I	ACGT	2 cut(s)	348, 727
Hsp92II	CATG	5 cut(s)	66, 517, 529, 613, 686
HspAI	GCGC	5 cut(s)	488, 490, 665, 701, 703
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	3, 31, 298, 314, 583
LpnPI	CCDG	6 cut(s)	152, 179, 234, 334, 656, 719
Lsp1109I	GCAGC	1 cut(s)	654
LweI	GCATC	3 cut(s)	201, 370, 698
MaeI	CTAG	4 cut(s)	384, 449, 552, 716
MaeII	ACGT	2 cut(s)	348, 727
MaeIII	GTNAC	3 cut(s)	232, 397, 739
MalI	GATC	5 cut(s)	5, 33, 300, 316, 585
MboI	GATC	5 cut(s)	3, 31, 298, 314, 583
MboII	GAAGA	1 cut(s)	485
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	2 cut(s)	245, 679
MluCI	AATT	3 cut(s)	119, 262, 444
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	35, 52, 150, 195, 209, 289, 469
MroI	TCCGGA	1 cut(s)	220
MslI	CAYNNNNRTG	1 cut(s)	728
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	4 cut(s)	490, 492, 703, 705
MwoI	GCNNNNNNNGC	1 cut(s)	688
NdeII	GATC	5 cut(s)	3, 31, 298, 314, 583
NheI	GCTAGC	1 cut(s)	383
NlaIII	CATG	5 cut(s)	66, 517, 529, 613, 686
NlaIV	GGNNCC	3 cut(s)	12, 225, 615
NmeAIII	GCCGAG	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	66
PauI	GCGCGC	2 cut(s)	488, 701
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	494, 578, 608, 669
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Ppu21I	YACGTR	1 cut(s)	728
PpuMI	RGGWCCY	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	12, 225, 615
PspPI	GGNCC	3 cut(s)	10, 218, 613
PspPPI	RGGWCCY	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	314
PteI	GCGCGC	2 cut(s)	488, 701
RseI	CAYNNNNRTG	1 cut(s)	728
SatI	GCNGC	4 cut(s)	493, 577, 607, 668
Sau3AI	GATC	5 cut(s)	3, 31, 298, 314, 583
Sau96I	GGNCC	3 cut(s)	10, 218, 613
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	245, 679
SfaNI	GCATC	3 cut(s)	201, 370, 698
SfcI	CTRYAG	1 cut(s)	668
SinI	GGWCC	3 cut(s)	10, 218, 613
SmiMI	CAYNNNNRTG	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	534
SmoI	CTYRAG	1 cut(s)	534
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	3 cut(s)	119, 262, 444
SsiI	CCGC	6 cut(s)	492, 576, 606, 705, 737, 747
SspMI	CTAG	4 cut(s)	384, 449, 552, 716
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	2 cut(s)	351, 730
TaqI	TCGA	2 cut(s)	6, 30
TasI	AATT	3 cut(s)	119, 262, 444
TauI	GCSGC	3 cut(s)	495, 579, 609
TfiI	GAWTC	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	667
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	5 cut(s)	63, 113, 302, 542, 650
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	3 cut(s)	10, 218, 613
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	66
XspI	CTAG	4 cut(s)	384, 449, 552, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.