Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016293

Physical Location & Seq

Genomic Coordinates Forward (+)

5291671 .. 5293877

Gene Structure 2207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATGTGGTGGTACCTTAGCAGAACACCTTCTTCAGCTTCAAATGCCAAACCCAGTGATCAATATTCCACCATTACTTTACACAATTCCATCTTCCCAGTTTCTGATTCTGGCCTTTTCAATGATATTTGCATTGTTGAAATCCCAAACAAACCCCTCATTGATCACAACAAAGACAACAACAAAAGCAGCAGCAAACAAGTAGAGACCTTTCCATGTTCATCATGGGAATGGTTTGCCTATCAATTCTCTCCAACCCAATTCCATTCTGTGGTTGTCCCTCGGGTTCTGTCGCCGGTGTTCAGAATCCAAGTTATTGGGGTCCTGCCTGAACATTTCTTGTGTGCCAAGCTGGTGCAGAGTCCTCATCAGCCTCATGCCACCCTGTGTACCTATTCATGCAGTGAAAATTCGCTTCATGATGTGCCTAAAATGAATTGTGAGGATCGGAACCCGTTCGGTGCTGCCTGTGCCCTTCGTGATGACTGGCTTTATGTTGCAGGAGGCTATAAGGGCAAATCTTCCAATATTGATCCTTCATCTTACTTGAATTCGGTTGAACGATTGAACCTGAAGACATGGGAATGGCAATCACTGCAAAACATGCAAGAACCGCGAGCATTTGCAGACGGCTTTACTCACAAGGGCAGGTTTTTCGTGGTCGGTGGTAGCGCAACTCTCAAGCACTCGGCTGAAATCTACAACCCCAGCACCAACTCCTGGGTGTGCTTAAAGTCATTTGTGCCCAAGGAGGCAGATGGGTTCACTGCAGCATCACTCAACGGGCGCTTAATGTTACTTACTTGGTCAGATCAGTTAGGTGTGAAGCTGTGGCTTTGGACTGTATTGGTTAATCCAAATTTGATATGCAGGTGCAGATTGATCAGTTTCTTTCCAAACCAAATTGTTGAGAGGCCAAGACTAAAATCACATGGAGCAAAAATGGTTCAAGTTGGGGGAAAGGAGGTGTGGGTTTTGGTGGGAGAGAGTGATAGATTTTGCCTGCAGGTTGATGGATCAAATGCCTTGCCAGTTTTCCCAGCACCAATGTTTAGGCCTGGTGATGGGCATGAAGCTGTGCAAAAGGGTCATATCTATGCCTTTTCTTTCACGGATGGAGTTGGATTAAGTTGGAGAAAAATCCCTGTTTACTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1

Protein Analysis

387

Amino Acids

43.41

Weight (kDa)

8.42

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36100
prunus_persica	Prupe.6G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0064521
rosa_laevigata	RLG00000035731
rosa_multiflora	Rmu_sc0003352.1_g000003 Rmu_sc0018367.1_g000005 Rmu_sc0021484.1_g000003 Rmu_ssc0000127.1_g000048
rosa_roxburghii	Rroxscaffold_1G00016500
rosa_rugosa	Rorug05G0365900
rosa_samantha	Rh5AG423800 Rh5BG439200 Rh5CG461800 Rh5DG452500
rosa_wichuraiana	Rw5G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	861
Acc36I	ACCTGC	3 cut(s)	639, 861, 997
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	12
AccB7I	CCANNNNNTGG	2 cut(s)	271, 720
AccII	CGCG	1 cut(s)	616
AciI	CCGC	1 cut(s)	614
AclWI	GGATC	3 cut(s)	453, 527, 1024
AcsI	RAATTY	3 cut(s)	409, 550, 859
AcuI	CTGAAG	2 cut(s)	18, 593
AdeI	CACNNNGTG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	14, 391
AfiI	CCNNNNNNNGG	3 cut(s)	271, 720, 1064
AgsI	TTSAA	7 cut(s)	42, 121, 140, 550, 560, 568, 950
AjnI	CCWGG	2 cut(s)	719, 1057
AluBI	AGCT	4 cut(s)	38, 352, 829, 1076
AluI	AGCT	4 cut(s)	38, 352, 829, 1076
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	3 cut(s)	453, 527, 1024
AlwNI	CAGNNNCTG	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	3 cut(s)	112, 914, 1055
ApeKI	GCWGC	4 cut(s)	189, 192, 464, 770
ApoI	RAATTY	3 cut(s)	409, 550, 859
Asp700I	GAANNNNTTC	2 cut(s)	28, 455
Asp718I	GGTACC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	674, 789
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	1073
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	2 cut(s)	475, 747
BanI	GGYRCC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	4 cut(s)	201, 204, 451, 782
BccI	CCATC	5 cut(s)	98, 752, 1007, 1058, 1109
BceAI	ACGGC	1 cut(s)	646
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	2 cut(s)	721, 1059
BclI	TGATCA	3 cut(s)	58, 163, 882
BcoDI	GTCTC	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	768, 1004
BfoI	RGCGCY	1 cut(s)	790
BfuAI	ACCTGC	3 cut(s)	639, 861, 997
BisI	GCNGC	4 cut(s)	190, 193, 465, 771
BlsI	GCNGC	4 cut(s)	191, 194, 466, 772
Bme1390I	CCNGG	2 cut(s)	721, 1059
Bme18I	GGWCC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	14, 323, 452
BmrFI	CCNGG	2 cut(s)	721, 1059
BmrI	ACTGGG	2 cut(s)	48, 92
BmsI	GCATC	1 cut(s)	782
BmuI	ACTGGG	2 cut(s)	48, 92
BpiI	GAAGAC	1 cut(s)	581
Bpu10I	CCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	281, 720, 747
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 720, 1064
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	4 cut(s)	54, 98, 491, 1031
BseBI	CCWGG	2 cut(s)	721, 1059
BseDI	CCNNGG	3 cut(s)	281, 720, 747
BseGI	GGATG	1 cut(s)	1120
BseLI	CCNNNNNNNGG	3 cut(s)	271, 720, 1064
BseNI	ACTGG	4 cut(s)	54, 98, 491, 1031
BseSI	GKGCMC	2 cut(s)	475, 747
BseXI	GCAGC	4 cut(s)	201, 204, 451, 782
BseYI	CCCAGC	2 cut(s)	707, 1039
BsgI	GTGCAG	2 cut(s)	377, 895
Bsh1236I	CGCG	1 cut(s)	616
BshFI	GGCC	3 cut(s)	114, 916, 1057
BshNI	GGYRCC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	3 cut(s)	271, 720, 1064
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	3 cut(s)	114, 916, 1057
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	475, 747
Bsp143I	GATC	7 cut(s)	58, 163, 445, 532, 811, 882, 1016
BspACI	CCGC	1 cut(s)	614
BspANI	GGCC	3 cut(s)	114, 916, 1057
BspFNI	CGCG	1 cut(s)	616
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	14, 323, 452
BspMAI	CTGCAG	2 cut(s)	772, 1008
BspMI	ACCTGC	3 cut(s)	639, 861, 997
BspPI	GGATC	3 cut(s)	453, 527, 1024
BspT107I	GGYRCC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	4 cut(s)	54, 98, 491, 1031
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	281, 720, 747
BssMI	GATC	7 cut(s)	58, 163, 445, 532, 811, 882, 1016
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	2 cut(s)	721, 1059
Bst4CI	ACNGT	1 cut(s)	844
BstAPI	GCANNNNNTGC	2 cut(s)	595, 604
BstC8I	GCNNGC	2 cut(s)	618, 1004
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	1120
BstFNI	CGCG	1 cut(s)	616
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	2 cut(s)	674, 789
BstKTI	GATC	7 cut(s)	61, 166, 448, 535, 814, 885, 1019
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	7 cut(s)	58, 163, 445, 532, 811, 882, 1016
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 470, 513, 595, 604, 613
BstNI	CCWGG	2 cut(s)	721, 1059
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	2 cut(s)	719, 1057
BstSFI	CTRYAG	2 cut(s)	768, 1004
BstSLI	GKGCMC	2 cut(s)	475, 747
BstUI	CGCG	1 cut(s)	616
BstV1I	GCAGC	4 cut(s)	201, 204, 451, 782
BstV2I	GAAGAC	1 cut(s)	581
BstXI	CCANNNNNNTGG	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	114, 916, 1057
BtsCI	GGATG	1 cut(s)	1120
BtsI	GCAGTG	3 cut(s)	409, 593, 765
BtsIMutI	CAGTG	4 cut(s)	61, 409, 593, 765
BveI	ACCTGC	3 cut(s)	639, 861, 997
Cac8I	GCNNGC	2 cut(s)	618, 1004
CaiI	CAGNNNCTG	1 cut(s)	104
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	674, 789
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	13, 390
CviAII	CATG	9 cut(s)	216, 225, 377, 399, 419, 579, 604, 932, 1070
CviQI	GTAC	2 cut(s)	13, 390
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	7 cut(s)	60, 165, 447, 534, 813, 884, 1018
DpnII	GATC	7 cut(s)	58, 163, 445, 532, 811, 882, 1016
DraIII	CACNNNGTG	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	747
Eco147I	AGGCCT	1 cut(s)	1057
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	18, 593
Eco88I	CYCGRG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	719, 1057
EcoT14I	CCWWGG	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	9 cut(s)	219, 228, 380, 402, 422, 582, 607, 935, 1073
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	9 cut(s)	215, 224, 376, 398, 418, 578, 603, 931, 1069
FbaI	TGATCA	3 cut(s)	58, 163, 882
Fnu4HI	GCNGC	4 cut(s)	190, 193, 465, 771
FokI	GGATG	1 cut(s)	1127
Fsp4HI	GCNGC	4 cut(s)	190, 193, 465, 771
GlaI	GCGC	2 cut(s)	673, 788
GluI	GCNGC	4 cut(s)	190, 193, 465, 771
GsaI	CCCAGC	2 cut(s)	711, 1043
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	3 cut(s)	114, 916, 1057
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	2 cut(s)	674, 789
Hin1II	CATG	9 cut(s)	219, 228, 380, 402, 422, 582, 607, 935, 1073
Hin6I	GCGC	2 cut(s)	672, 787
HinP1I	GCGC	2 cut(s)	672, 787
HinfI	GANTC	3 cut(s)	107, 306, 361
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	1073
Hpy166II	GTNNAC	3 cut(s)	390, 765, 1150
Hpy188I	TCNGA	4 cut(s)	106, 305, 450, 811
Hpy188III	TCNNGA	2 cut(s)	419, 479
Hpy8I	GTNNAC	3 cut(s)	390, 765, 1150
HpyAV	CCTTC	3 cut(s)	39, 485, 546
HpyCH4III	ACNGT	1 cut(s)	844
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 470, 513, 595, 604, 613
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	9 cut(s)	219, 228, 380, 402, 422, 582, 607, 935, 1073
HspAI	GCGC	2 cut(s)	672, 787
KpnI	GGTACC	1 cut(s)	16
Ksp22I	TGATCA	3 cut(s)	58, 163, 882
Kzo9I	GATC	7 cut(s)	58, 163, 445, 532, 811, 882, 1016
LmnI	GCTCC	1 cut(s)	935
Lsp1109I	GCAGC	4 cut(s)	201, 204, 451, 782
LweI	GCATC	1 cut(s)	782
MaeIII	GTNAC	1 cut(s)	795
MalI	GATC	7 cut(s)	60, 165, 447, 534, 813, 884, 1018
MboI	GATC	7 cut(s)	58, 163, 445, 532, 811, 882, 1016
MboII	GAAGA	4 cut(s)	24, 85, 513, 586
MhlI	GDGCHC	2 cut(s)	475, 747
MluCI	AATT	9 cut(s)	85, 245, 260, 409, 436, 550, 859, 903, 1155
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	3 cut(s)	278, 1102, 1112
MnlI	CCTC	9 cut(s)	167, 291, 375, 384, 436, 497, 745, 906, 958
MroXI	GAANNNNTTC	2 cut(s)	28, 455
MseI	TTAA	4 cut(s)	731, 791, 852, 1127
MslI	CAYNNNNRTG	3 cut(s)	229, 583, 1095
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	721, 1059
MvaI	CCWGG	2 cut(s)	721, 1059
MvnI	CGCG	1 cut(s)	616
MwoI	GCNNNNNNNGC	6 cut(s)	44, 470, 513, 595, 604, 613
NdeII	GATC	7 cut(s)	58, 163, 445, 532, 811, 882, 1016
NlaIII	CATG	9 cut(s)	219, 228, 380, 402, 422, 582, 607, 935, 1073
NlaIV	GGNNCC	3 cut(s)	14, 323, 452
NmeAIII	GCCGAG	1 cut(s)	668
NspI	RCATGY	1 cut(s)	607
PagI	TCATGA	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	861
PceI	AGGCCT	1 cut(s)	1057
PdmI	GAANNNNTTC	2 cut(s)	28, 455
PfeI	GAWTC	2 cut(s)	107, 306
PflMI	CCANNNNNTGG	2 cut(s)	271, 720
PkrI	GCNGC	4 cut(s)	191, 194, 466, 772
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	719, 1057
PspFI	CCCAGC	2 cut(s)	707, 1039
PspGI	CCWGG	2 cut(s)	719, 1057
PspN4I	GGNNCC	3 cut(s)	14, 323, 452
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PstI	CTGCAG	2 cut(s)	772, 1008
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	14, 391
RsaNI	GTAC	2 cut(s)	13, 390
RseI	CAYNNNNRTG	3 cut(s)	229, 583, 1095
SaqAI	TTAA	4 cut(s)	731, 791, 852, 1127
SatI	GCNGC	4 cut(s)	190, 193, 465, 771
Sau3AI	GATC	7 cut(s)	58, 163, 445, 532, 811, 882, 1016
Sau96I	GGNCC	1 cut(s)	322
SbfI	CCTGCAGG	1 cut(s)	1008
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	721, 1059
SdaI	CCTGCAGG	1 cut(s)	1008
SduI	GDGCHC	2 cut(s)	475, 747
SfaNI	GCATC	1 cut(s)	782
SfcI	CTRYAG	2 cut(s)	768, 1004
SgrAI	CRCCGGYG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	3 cut(s)	229, 583, 1095
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse8387I	CCTGCAGG	1 cut(s)	1008
Sse9I	AATT	9 cut(s)	85, 245, 260, 409, 436, 550, 859, 903, 1155
SseBI	AGGCCT	1 cut(s)	1057
SsiI	CCGC	1 cut(s)	614
SspI	AATATT	2 cut(s)	65, 529
StuI	AGGCCT	1 cut(s)	1057
StyD4I	CCNGG	2 cut(s)	719, 1057
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	1 cut(s)	844
TasI	AATT	9 cut(s)	85, 245, 260, 409, 436, 550, 859, 903, 1155
TfiI	GAWTC	2 cut(s)	107, 306
Tru1I	TTAA	4 cut(s)	731, 791, 852, 1127
Tru9I	TTAA	4 cut(s)	731, 791, 852, 1127
TscAI	CASTG	4 cut(s)	61, 409, 600, 772
TseI	GCWGC	4 cut(s)	189, 192, 464, 770
TspDTI	ATGAA	6 cut(s)	210, 387, 407, 449, 528, 1086
TspGWI	ACGGA	1 cut(s)	1127
TspRI	CASTG	4 cut(s)	61, 409, 600, 772
Van91I	CCANNNNNTGG	2 cut(s)	271, 720
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	3 cut(s)	409, 550, 859
XceI	RCATGY	1 cut(s)	607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	222
XmnI	GAANNNNTTC	2 cut(s)	28, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.