Rh5AG423800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016293
Physical Location & Seq
Reverse (-)
73077939 .. 73080296
2358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG423800.1

Sequence Viewer

Length: 1134 bp
ATGTGGTATCTTAGTAGAACACCTTCAAACCGCAAACCAAATGATGACTCCAGCTTCAGTTTGCGCAATTCCATCTTCACCGTCTCCGATTCCGGTTTTTTCCAAGACATTTGCATGATTGAGGTGCCAAACAAATCCGTGGTCGATCACGAAGAACACAACAAAGAAGAAGAGACGTGCCCATTTTCATTCTCATTCCCAAAATGGGAATGGTTTGCCTATCTCTGCTCTCCCACCCAATTCCATTCCGTGGCGGTGCCTCGAAACTCTTGCATGTTTAGAGTACAGGTGATTGGGATTCTGCCTCAACATTTCTTGTGTGCCAAGTTGGTGCGAGGTCCGAAACCTTATGTCACTCTGTGCACTTACTCATGCAGTGAGAATTCTCTCAATGATGTGCCCAAAATGAACTGTGCGGATCGCGATCTGTTCGGAGCTGCATGTGCTATTCTTGATGGGTGGCTATATGTTGCTGGAGGGTATAAGGATAACTCTTTAGACACTTTCCCTTCATCTCCCTTGAACTCGGCAGAACGATTGAATCTGAAAACATGGCAGTGGGAAGCACTGCAGAATATGCCAAACCCGCGAGCATTTGCATCTGGCATTGCTCACGGAGGCAGGTTCTTTGTGGTTGGTGGTGGTAGCAATGCAGCCCTGAAGCACTCAGCTGAAATCTACAACCCCAGCAACAACTCTTGGGGGTCTTTGAAATTATTTGTTCCCCAAGAGGCAGACGGATTCACTGCTACATCACTCAATGGGCGTTTAATGATATTGACTTGGTCAGATCGGTTAGGCGTGAAGCTGTGGCTGTATACTGTGATCACCCATCCAATTTTAATATATAACTGCAGGCGAATTGGTTTCTTGCCGAACCAAATAGTTGAGAGGCCAAGACTAAAAGCACATGGCGCAAGAATGGTTCCGGTTGGGGGGAAGGAGGTGTGGGTTTTGGTGGGAGAGAATGAGAGGATATTCCAAGTTGATGGGTCAAGTGCTTGGCCTGTCTTCCCAGCCCCAATGTATAAGCCTAGTGAAGGACATGAAGTTGTGAGCAAGGGTCATATCTATGCCTTTTCTTTCCATGGGTTTAGAATAAGTTGGAGACAAATCCCTGTTTACTCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_1

Protein Analysis

377

Amino Acids

42.53

Weight (kDa)

8.47

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Calicin PF13964 122 - 236 5.6e-06 Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 139 - 259 1.2e-09 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_1 PF01344 145 - 194 2.3e-08 Kelch motif
Beta-prop_FBX42 PF13415 146 - 321 5.2e-07 FBX42, beta-propeller domain
Kelch_1 PF01344 196 - 234 4.8e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 612
AccB1I GGYRCC 2 cut(s) 124, 256
AccB7I CCANNNNNTGG 1 cut(s) 250
AccI GTMKAC 1 cut(s) 818
AccII CGCG 2 cut(s) 423, 589
AciI CCGC 4 cut(s) 31, 254, 416, 587
AclWI GGATC 1 cut(s) 426
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 2 cut(s) 40, 680
AdeI CACNNNGTG 1 cut(s) 360
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 4 cut(s) 205, 250, 935, 1040
AgsI TTSAA 4 cut(s) 27, 523, 541, 712
AjiI CACGTC 1 cut(s) 177
AluBI AGCT 4 cut(s) 54, 437, 671, 808
AluI AGCT 4 cut(s) 54, 437, 671, 808
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 3 cut(s) 88, 167, 1102
Alw44I GTGCAC 1 cut(s) 361
AlwI GGATC 1 cut(s) 426
AoxI GGCC 2 cut(s) 893, 1004
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 2 cut(s) 437, 653
ApoI RAATTY 1 cut(s) 382
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
Asp700I GAANNNNTTC 1 cut(s) 22
AspLEI GCGC 2 cut(s) 66, 917
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 3 cut(s) 70, 301, 820
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 3 cut(s) 182, 365, 402
BanI GGYRCC 2 cut(s) 124, 256
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
BbsI GAAGAC 1 cut(s) 1003
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 424, 665
BccI CCATC 4 cut(s) 80, 449, 840, 983
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BclI TGATCA 1 cut(s) 825
BcoDI GTCTC 3 cut(s) 88, 167, 1102
BfaI CTAG 1 cut(s) 1035
BfmI CTRYAG 2 cut(s) 569, 853
BfuAI ACCTGC 1 cut(s) 612
BisI GCNGC 2 cut(s) 438, 654
BlsI GCNGC 2 cut(s) 439, 655
Bme18I GGWCC 1 cut(s) 338
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 3 cut(s) 126, 258, 927
BmsI GCATC 1 cut(s) 608
BpiI GAAGAC 1 cut(s) 1003
BpmI CTGGAG 2 cut(s) 34, 495
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 138, 249, 1087
BsaWI WCCGGW 2 cut(s) 92, 928
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 250, 935, 1040
Bse3DI GCAATG 2 cut(s) 606, 655
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 138, 249, 1087
BseGI GGATG 1 cut(s) 832
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 4 cut(s) 205, 250, 935, 1040
BseMI GCAATG 2 cut(s) 606, 655
BseMII CTCAG 1 cut(s) 681
BseSI GKGCMC 3 cut(s) 182, 365, 402
BseXI GCAGC 2 cut(s) 424, 665
BseYI CCCAGC 2 cut(s) 686, 1015
Bsh1236I CGCG 2 cut(s) 423, 589
BshFI GGCC 2 cut(s) 895, 1006
BshNI GGYRCC 2 cut(s) 124, 256
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 2 cut(s) 93, 929
BslI CCNNNNNNNGG 4 cut(s) 205, 250, 935, 1040
BsmAI GTCTC 3 cut(s) 88, 167, 1102
BsmBI CGTCTC 2 cut(s) 88, 167
BsnI GGCC 2 cut(s) 895, 1006
Bsp1286I GDGCHC 3 cut(s) 182, 365, 402
Bsp143I GATC 5 cut(s) 145, 418, 424, 790, 825
Bsp19I CCATGG 1 cut(s) 1087
Bsp68I TCGCGA 1 cut(s) 423
BspACI CCGC 4 cut(s) 31, 254, 416, 587
BspANI GGCC 2 cut(s) 895, 1006
BspCNI CTCAG 1 cut(s) 680
BspFNI CGCG 2 cut(s) 423, 589
BspLI GGNNCC 3 cut(s) 126, 258, 927
BspMAI CTGCAG 2 cut(s) 573, 857
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 1 cut(s) 426
BspT107I GGYRCC 2 cut(s) 124, 256
BsrDI GCAATG 2 cut(s) 606, 655
BssECI CCNNGG 3 cut(s) 138, 249, 1087
BssMI GATC 5 cut(s) 145, 418, 424, 790, 825
BssNAI GTATAC 1 cut(s) 819
BssT1I CCWWGG 1 cut(s) 1087
Bst1107I GTATAC 1 cut(s) 819
Bst4CI ACNGT 3 cut(s) 82, 413, 823
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 591, 857
BstDEI CTNAG 2 cut(s) 11, 667
BstDSI CCRYGG 3 cut(s) 138, 249, 1087
BstENI CCTNNNNNAGG 1 cut(s) 1038
BstF5I GGATG 1 cut(s) 832
BstFNI CGCG 2 cut(s) 423, 589
BstHHI GCGC 2 cut(s) 66, 917
BstKTI GATC 5 cut(s) 148, 421, 427, 793, 828
BstMAI GTCTC 3 cut(s) 88, 167, 1102
BstMBI GATC 5 cut(s) 145, 418, 424, 790, 825
BstMWI GCNNNNNNNGC 4 cut(s) 443, 577, 586, 914
BstNSI RCATGY 2 cut(s) 277, 444
BstSFI CTRYAG 2 cut(s) 569, 853
BstSLI GKGCMC 3 cut(s) 182, 365, 402
BstUI CGCG 2 cut(s) 423, 589
BstV1I GCAGC 2 cut(s) 424, 665
BstV2I GAAGAC 1 cut(s) 1003
BstXI CCANNNNNNTGG 1 cut(s) 989
BstZ17I GTATAC 1 cut(s) 819
BsuRI GGCC 2 cut(s) 895, 1006
BtgI CCRYGG 3 cut(s) 138, 249, 1087
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 832
BtsI GCAGTG 4 cut(s) 382, 563, 566, 744
BtsIMutI CAGTG 4 cut(s) 382, 563, 566, 744
BtuMI TCGCGA 1 cut(s) 423
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 591, 857
CfoI GCGC 2 cut(s) 66, 917
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 284
CviAII CATG 8 cut(s) 115, 274, 372, 441, 552, 911, 1046, 1088
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 2 cut(s) 11, 667
DpnI GATC 5 cut(s) 147, 420, 426, 792, 827
DpnII GATC 5 cut(s) 145, 418, 424, 790, 825
DraIII CACNNNGTG 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 1087
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 2 cut(s) 40, 680
EcoNI CCTNNNNNAGG 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 1087
ErhI CCWWGG 1 cut(s) 1087
Esp3I CGTCTC 2 cut(s) 88, 167
FaeI CATG 8 cut(s) 118, 277, 375, 444, 555, 914, 1049, 1091
FatI CATG 8 cut(s) 114, 273, 371, 440, 551, 910, 1045, 1087
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 825
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 2 cut(s) 438, 654
FokI GGATG 1 cut(s) 819
Fsp4HI GCNGC 2 cut(s) 438, 654
FspBI CTAG 1 cut(s) 1035
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 2 cut(s) 65, 916
GluI GCNGC 2 cut(s) 438, 654
GsaI CCCAGC 2 cut(s) 690, 1019
GsuI CTGGAG 2 cut(s) 34, 495
HaeIII GGCC 2 cut(s) 895, 1006
HapII CCGG 2 cut(s) 93, 929
HhaI GCGC 2 cut(s) 66, 917
Hin1II CATG 8 cut(s) 118, 277, 375, 444, 555, 914, 1049, 1091
Hin6I GCGC 2 cut(s) 64, 915
HinP1I GCGC 2 cut(s) 64, 915
HinfI GANTC 5 cut(s) 47, 89, 298, 541, 741
HpaII CCGG 2 cut(s) 93, 929
HphI GGTGA 3 cut(s) 70, 301, 820
Hpy166II GTNNAC 3 cut(s) 363, 819, 1123
Hpy188I TCNGA 6 cut(s) 88, 342, 434, 546, 790, 1133
Hpy188III TCNNGA 3 cut(s) 149, 422, 452
Hpy8I GTNNAC 3 cut(s) 363, 819, 1123
HpyAV CCTTC 4 cut(s) 33, 519, 934, 1034
HpyCH4III ACNGT 3 cut(s) 82, 413, 823
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 9 cut(s) 114, 273, 363, 375, 440, 571, 599, 653, 855
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 577, 586, 914
HpyF3I CTNAG 2 cut(s) 11, 667
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 8 cut(s) 118, 277, 375, 444, 555, 914, 1049, 1091
HspAI GCGC 2 cut(s) 64, 915
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 5 cut(s) 145, 418, 424, 790, 825
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 2 cut(s) 424, 665
LweI GCATC 1 cut(s) 608
MaeI CTAG 1 cut(s) 1035
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 352
MalI GATC 5 cut(s) 147, 420, 426, 792, 827
MboI GATC 5 cut(s) 145, 418, 424, 790, 825
MboII GAAGA 5 cut(s) 67, 164, 179, 182, 1003
MhlI GDGCHC 3 cut(s) 182, 365, 402
MluCI AATT 6 cut(s) 67, 239, 382, 713, 837, 861
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 1085
MroXI GAANNNNTTC 1 cut(s) 22
MseI TTAA 2 cut(s) 770, 842
MslI CAYNNNNRTG 3 cut(s) 113, 556, 1071
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 2 cut(s) 93, 929
MvnI CGCG 2 cut(s) 423, 589
MwoI GCNNNNNNNGC 4 cut(s) 443, 577, 586, 914
NcoI CCATGG 1 cut(s) 1087
NdeII GATC 5 cut(s) 145, 418, 424, 790, 825
NlaIII CATG 8 cut(s) 118, 277, 375, 444, 555, 914, 1049, 1091
NlaIV GGNNCC 3 cut(s) 126, 258, 927
NmeAIII GCCGAG 1 cut(s) 506
NmuCI GTSAC 1 cut(s) 352
NruI TCGCGA 1 cut(s) 423
NsbI TGCGCA 1 cut(s) 65
NspI RCATGY 2 cut(s) 277, 444
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 4 cut(s) 89, 298, 541, 741
PflFI GACNNNGTC 1 cut(s) 784
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 2 cut(s) 439, 655
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspFI CCCAGC 2 cut(s) 686, 1015
PspN4I GGNNCC 3 cut(s) 126, 258, 927
PspPI GGNCC 1 cut(s) 338
PstI CTGCAG 2 cut(s) 573, 857
PsyI GACNNNGTC 1 cut(s) 784
PvuII CAGCTG 1 cut(s) 671
RruI TCGCGA 1 cut(s) 423
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 3 cut(s) 113, 556, 1071
SaqAI TTAA 2 cut(s) 770, 842
SatI GCNGC 2 cut(s) 438, 654
Sau3AI GATC 5 cut(s) 145, 418, 424, 790, 825
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 3 cut(s) 182, 365, 402
SfaNI GCATC 1 cut(s) 608
SfcI CTRYAG 2 cut(s) 569, 853
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 3 cut(s) 113, 556, 1071
Sse9I AATT 6 cut(s) 67, 239, 382, 713, 837, 861
SsiI CCGC 4 cut(s) 31, 254, 416, 587
SspMI CTAG 1 cut(s) 1035
StyI CCWWGG 1 cut(s) 1087
TaaI ACNGT 3 cut(s) 82, 413, 823
TaiI ACGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 144, 262
TasI AATT 6 cut(s) 67, 239, 382, 713, 837, 861
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 4 cut(s) 89, 298, 541, 741
Tru1I TTAA 2 cut(s) 770, 842
Tru9I TTAA 2 cut(s) 770, 842
TscAI CASTG 4 cut(s) 382, 563, 573, 751
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 437, 653
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 4 cut(s) 177, 422, 501, 1062
TspGWI ACGGA 4 cut(s) 127, 238, 630, 753
TspRI CASTG 4 cut(s) 382, 563, 573, 751
Tth111I GACNNNGTC 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 338
XagI CCTNNNNNAGG 1 cut(s) 1038
XapI RAATTY 1 cut(s) 382
XceI RCATGY 2 cut(s) 277, 444
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.