Rh5CG461800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016293
Physical Location & Seq
Reverse (-)
64426879 .. 64429287
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG461800.1

Sequence Viewer

Length: 1131 bp
ATGTGGTATCTTAGTAGAACACCTTCAAACCGCAAACCAAATGATGACTCCAGCTTCAGTTTGCGCAATTCCATCTTCACCGTCTCCGATTCCGGTTTTTTCCAAGACATTTGCATGATTGAGGTGCCAAACAAATCCGTGGTCGATCACGAAGAACACAACAAAGAAGAGACGTGCCCATTTTCATTCTCATTCCCAAAATGGGAATGGTTTGCCTATCTCTGCTCTCCCACCCAATTCCATTCCGTGGTGGTGCCTCGAAACTCTTCCATGTTTAGAGTACAGGTGATTGGGATTCTGCCTCAACATTTCTTGTGTGCCAAGTTGGTGCGAGGTCCGAAACCTTATGTCACTCTGTGCACTTACTCATGCAGTGAGAATTCTCTCAATGATGTGCCCAAAATGAACTGTGCGGATCGCAATCTGTTCGGAGCTGCATGTGCTATTCTTGATGGGTGGCTTTATGTTGCTGGAGGGTATAAGGATAACTCTTTAGACACTTTCCCTTCATGTCACTTGAACTCGGCAGAACGATTGAATCTGAAAACATGGCAGTGGGAAGCACTGCAGAACATGCCAAACCCGCGAGCATTTGCATCTGGCATTGCTCACGGAGGCAGGTTCTTTGTGGTTGGTGGTGGTAGCAATGCAGCCCTGAAGCACTCAGCTGAAATCTACAACCCCAGCAACAACTCTTGGGGGTCTTTGAAATCATTTGTTCCCCAAGAGGCAGACGGATTCACTGCTACATCACTCAATGGGCGTTTAATGATATTGACTTGGTCAGATCGGTTAGGCGTGAAGCTGTGGCTGTATACTGTGATCACCCATCCAATTTTAATATATAACTGCAGGCGAATTGGTTTCTTGCCGAACCAAATAGTTGAGAGGCCAAGACTAAAAGCACATGGCGCAAGAATGGTTCCGGTTGGGGGGAAGGAGGTGTGGGTTTTGGTGGGAGAGAATGAGAGGATATTCCAAGTTGATGGGTCAAGTGCTTGGCCTGTCTTCCCAGCCCCAATGTATAAGCCTAGTGAAGGACATGAAGTTGTGAGCAAGGGTCATATCTATGCCTTTTCTTTCCATGGGTTTAGAATAAGTTGGAGACAAATCCCTGTTTACTCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_1

Protein Analysis

376

Amino Acids

42.44

Weight (kDa)

8.74

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Calicin PF13964 121 - 236 3.3e-06 Calicin, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 127 - 258 5.4e-10 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_1 PF01344 144 - 193 3.8e-08 Kelch motif
Beta-prop_FBX42 PF13415 145 - 320 2.5e-07 FBX42, beta-propeller domain
Kelch_1 PF01344 195 - 233 3.7e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 609
AccB1I GGYRCC 2 cut(s) 124, 253
AccB7I CCANNNNNTGG 1 cut(s) 247
AccI GTMKAC 1 cut(s) 815
AccII CGCG 1 cut(s) 586
AciI CCGC 3 cut(s) 31, 413, 584
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 2 cut(s) 40, 677
AdeI CACNNNGTG 1 cut(s) 357
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 4 cut(s) 202, 247, 932, 1037
AgsI TTSAA 4 cut(s) 27, 520, 538, 709
AjiI CACGTC 1 cut(s) 174
AluBI AGCT 4 cut(s) 54, 434, 668, 805
AluI AGCT 4 cut(s) 54, 434, 668, 805
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 3 cut(s) 88, 164, 1099
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 1 cut(s) 423
AoxI GGCC 2 cut(s) 890, 1001
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 434, 650
ApoI RAATTY 1 cut(s) 379
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
Asp700I GAANNNNTTC 2 cut(s) 22, 265
AspLEI GCGC 2 cut(s) 66, 914
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 70, 298, 817
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 3 cut(s) 179, 362, 399
BanI GGYRCC 2 cut(s) 124, 253
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
BbsI GAAGAC 1 cut(s) 1000
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 421, 662
BccI CCATC 4 cut(s) 80, 446, 837, 980
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 88, 164, 1099
BfaI CTAG 1 cut(s) 1032
BfmI CTRYAG 2 cut(s) 566, 850
BfuAI ACCTGC 1 cut(s) 609
BisI GCNGC 2 cut(s) 435, 651
BlsI GCNGC 2 cut(s) 436, 652
Bme18I GGWCC 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 3 cut(s) 126, 255, 924
BmsI GCATC 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 1000
BpmI CTGGAG 2 cut(s) 34, 492
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 138, 246, 1084
BsaWI WCCGGW 2 cut(s) 92, 925
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 247, 932, 1037
Bse3DI GCAATG 2 cut(s) 603, 652
Bse8I GATNNNNATC 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 138, 246, 1084
BseGI GGATG 1 cut(s) 829
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 4 cut(s) 202, 247, 932, 1037
BseMI GCAATG 2 cut(s) 603, 652
BseMII CTCAG 1 cut(s) 678
BseSI GKGCMC 3 cut(s) 179, 362, 399
BseXI GCAGC 2 cut(s) 421, 662
BseYI CCCAGC 2 cut(s) 683, 1012
Bsh1236I CGCG 1 cut(s) 586
BshFI GGCC 2 cut(s) 892, 1003
BshNI GGYRCC 2 cut(s) 124, 253
BsiHKAI GWGCWC 1 cut(s) 362
BsiSI CCGG 2 cut(s) 93, 926
BslI CCNNNNNNNGG 4 cut(s) 202, 247, 932, 1037
BsmAI GTCTC 3 cut(s) 88, 164, 1099
BsmBI CGTCTC 2 cut(s) 88, 164
BsnI GGCC 2 cut(s) 892, 1003
Bsp1286I GDGCHC 3 cut(s) 179, 362, 399
Bsp143I GATC 4 cut(s) 145, 415, 787, 822
Bsp19I CCATGG 1 cut(s) 1084
BspACI CCGC 3 cut(s) 31, 413, 584
BspANI GGCC 2 cut(s) 892, 1003
BspCNI CTCAG 1 cut(s) 677
BspFNI CGCG 1 cut(s) 586
BspLI GGNNCC 3 cut(s) 126, 255, 924
BspMAI CTGCAG 2 cut(s) 570, 854
BspMI ACCTGC 1 cut(s) 609
BspPI GGATC 1 cut(s) 423
BspT107I GGYRCC 2 cut(s) 124, 253
BsrDI GCAATG 2 cut(s) 603, 652
BssECI CCNNGG 3 cut(s) 138, 246, 1084
BssMI GATC 4 cut(s) 145, 415, 787, 822
BssNAI GTATAC 1 cut(s) 816
BssT1I CCWWGG 1 cut(s) 1084
Bst1107I GTATAC 1 cut(s) 816
Bst4CI ACNGT 3 cut(s) 82, 410, 820
Bst6I CTCTTC 2 cut(s) 162, 271
BstAPI GCANNNNNTGC 1 cut(s) 574
BstC8I GCNNGC 2 cut(s) 588, 854
BstDEI CTNAG 2 cut(s) 11, 664
BstDSI CCRYGG 3 cut(s) 138, 246, 1084
BstENI CCTNNNNNAGG 1 cut(s) 1035
BstF5I GGATG 1 cut(s) 829
BstFNI CGCG 1 cut(s) 586
BstHHI GCGC 2 cut(s) 66, 914
BstKTI GATC 4 cut(s) 148, 418, 790, 825
BstMAI GTCTC 3 cut(s) 88, 164, 1099
BstMBI GATC 4 cut(s) 145, 415, 787, 822
BstMWI GCNNNNNNNGC 4 cut(s) 440, 574, 583, 911
BstNSI RCATGY 2 cut(s) 441, 577
BstSFI CTRYAG 2 cut(s) 566, 850
BstSLI GKGCMC 3 cut(s) 179, 362, 399
BstUI CGCG 1 cut(s) 586
BstV1I GCAGC 2 cut(s) 421, 662
BstV2I GAAGAC 1 cut(s) 1000
BstXI CCANNNNNNTGG 1 cut(s) 986
BstZ17I GTATAC 1 cut(s) 816
BsuRI GGCC 2 cut(s) 892, 1003
BtgI CCRYGG 3 cut(s) 138, 246, 1084
BtrI CACGTC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 829
BtsI GCAGTG 4 cut(s) 379, 560, 563, 741
BtsIMutI CAGTG 4 cut(s) 379, 560, 563, 741
BveI ACCTGC 1 cut(s) 609
Cac8I GCNNGC 2 cut(s) 588, 854
CfoI GCGC 2 cut(s) 66, 914
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 281
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 2 cut(s) 11, 664
DpnI GATC 4 cut(s) 147, 417, 789, 824
DpnII GATC 4 cut(s) 145, 415, 787, 822
DraIII CACNNNGTG 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 162, 271
EarI CTCTTC 2 cut(s) 162, 271
Eco130I CCWWGG 1 cut(s) 1084
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 2 cut(s) 40, 677
EcoNI CCTNNNNNAGG 1 cut(s) 1035
EcoRI GAATTC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 1084
ErhI CCWWGG 1 cut(s) 1084
Esp3I CGTCTC 2 cut(s) 88, 164
FauI CCCGC 1 cut(s) 591
FbaI TGATCA 1 cut(s) 822
FblI GTMKAC 1 cut(s) 815
Fnu4HI GCNGC 2 cut(s) 435, 651
FokI GGATG 1 cut(s) 816
Fsp4HI GCNGC 2 cut(s) 435, 651
FspBI CTAG 1 cut(s) 1032
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 2 cut(s) 65, 913
GluI GCNGC 2 cut(s) 435, 651
GsaI CCCAGC 2 cut(s) 687, 1016
GsuI CTGGAG 2 cut(s) 34, 492
HaeIII GGCC 2 cut(s) 892, 1003
HapII CCGG 2 cut(s) 93, 926
HhaI GCGC 2 cut(s) 66, 914
Hin6I GCGC 2 cut(s) 64, 912
HinP1I GCGC 2 cut(s) 64, 912
HinfI GANTC 5 cut(s) 47, 89, 295, 538, 738
HpaII CCGG 2 cut(s) 93, 926
HphI GGTGA 3 cut(s) 70, 298, 817
Hpy166II GTNNAC 3 cut(s) 360, 816, 1120
Hpy188I TCNGA 6 cut(s) 88, 339, 431, 543, 787, 1130
Hpy188III TCNNGA 2 cut(s) 149, 449
Hpy8I GTNNAC 3 cut(s) 360, 816, 1120
HpyAV CCTTC 4 cut(s) 33, 516, 931, 1031
HpyCH4III ACNGT 3 cut(s) 82, 410, 820
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 8 cut(s) 114, 360, 372, 437, 568, 596, 650, 852
HpyF10VI GCNNNNNNNGC 4 cut(s) 440, 574, 583, 911
HpyF3I CTNAG 2 cut(s) 11, 664
HpySE526I ACGT 1 cut(s) 173
HspAI GCGC 2 cut(s) 64, 912
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 4 cut(s) 145, 415, 787, 822
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 2 cut(s) 421, 662
LweI GCATC 1 cut(s) 605
MaeI CTAG 1 cut(s) 1032
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 349, 512
MalI GATC 4 cut(s) 147, 417, 789, 824
MboI GATC 4 cut(s) 145, 415, 787, 822
MboII GAAGA 5 cut(s) 67, 164, 179, 258, 1000
MhlI GDGCHC 3 cut(s) 179, 362, 399
MluCI AATT 5 cut(s) 67, 236, 379, 834, 858
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 1082
MroXI GAANNNNTTC 2 cut(s) 22, 265
MseI TTAA 2 cut(s) 767, 839
MslI CAYNNNNRTG 3 cut(s) 113, 553, 1068
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 2 cut(s) 93, 926
MvnI CGCG 1 cut(s) 586
MwoI GCNNNNNNNGC 4 cut(s) 440, 574, 583, 911
NcoI CCATGG 1 cut(s) 1084
NdeII GATC 4 cut(s) 145, 415, 787, 822
NlaIV GGNNCC 3 cut(s) 126, 255, 924
NmeAIII GCCGAG 1 cut(s) 503
NmuCI GTSAC 2 cut(s) 349, 512
NsbI TGCGCA 1 cut(s) 65
NspI RCATGY 2 cut(s) 441, 577
PdmI GAANNNNTTC 2 cut(s) 22, 265
PfeI GAWTC 4 cut(s) 89, 295, 538, 738
PflFI GACNNNGTC 1 cut(s) 781
PflMI CCANNNNNTGG 1 cut(s) 247
PkrI GCNGC 2 cut(s) 436, 652
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspFI CCCAGC 2 cut(s) 683, 1012
PspN4I GGNNCC 3 cut(s) 126, 255, 924
PspPI GGNCC 1 cut(s) 335
PstI CTGCAG 2 cut(s) 570, 854
PsyI GACNNNGTC 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 3 cut(s) 113, 553, 1068
SaqAI TTAA 2 cut(s) 767, 839
SatI GCNGC 2 cut(s) 435, 651
Sau3AI GATC 4 cut(s) 145, 415, 787, 822
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 3 cut(s) 179, 362, 399
SfaNI GCATC 1 cut(s) 605
SfcI CTRYAG 2 cut(s) 566, 850
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 3 cut(s) 113, 553, 1068
Sse9I AATT 5 cut(s) 67, 236, 379, 834, 858
SsiI CCGC 3 cut(s) 31, 413, 584
SspMI CTAG 1 cut(s) 1032
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 3 cut(s) 82, 410, 820
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 144, 259
TasI AATT 5 cut(s) 67, 236, 379, 834, 858
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 4 cut(s) 89, 295, 538, 738
Tru1I TTAA 2 cut(s) 767, 839
Tru9I TTAA 2 cut(s) 767, 839
TscAI CASTG 4 cut(s) 379, 560, 570, 748
TseFI GTSAC 2 cut(s) 349, 512
TseI GCWGC 2 cut(s) 434, 650
Tsp45I GTSAC 2 cut(s) 349, 512
TspDTI ATGAA 4 cut(s) 174, 419, 498, 1059
TspGWI ACGGA 4 cut(s) 127, 235, 627, 750
TspRI CASTG 4 cut(s) 379, 560, 570, 748
Tth111I GACNNNGTC 1 cut(s) 781
Van91I CCANNNNNTGG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 335
XagI CCTNNNNNAGG 1 cut(s) 1035
XapI RAATTY 1 cut(s) 379
XceI RCATGY 2 cut(s) 441, 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XmiI GTMKAC 1 cut(s) 815
XmnI GAANNNNTTC 2 cut(s) 22, 265
XspI CTAG 1 cut(s) 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.