Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

48760734 .. 48765946

Gene Structure 5213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0365900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAATGCTCTACTTCTTCTTCCTCTTCTTCTTTAAGCAGCTTTTCCATACTGCGAAAGCCTTGCCCATTTGTGCCACCATTTACCACCACCGTTTATAGGAAGCAGCAGCAGCAGCAGCGGCGACCCCTTATCCAACTCTCCGCAGTTTCTTACAACAAATTCATTCACTTCGCTTTGGATGAGTCCAAACGCCGCACCCATTTGGCCCCTTCTCCCCTCCAGGAAAGATATAATTCCATGGTTTCCATGGATGGTAATGCACAACTTCAAATGTCATCATTCAAAGCTACTAAGATTAGGCTTTTACGTAGCCTATGTATTGAGACTCAAACAATGCAGGTTTTGGATTTTGCTGTCTTCCCAGAACCAGAATTTGATATGCCAATATTTTGTGCCAACTTCTTCACCAGTGCGGATGTTAACATAGTTGTGCTGGACCTCAACCCTTTGCACAACGTTATTATTGAAAGAGAATACAGAGATAAATACTACAAAGGCCTAATACCTCTTGGTGTCAAATATGCTGAGCTTTTACCATGGGGTGGGAAGCTTACTAGCGAGTCATTGAAATTTTTTTCACCCATTGTTATATGGACAAGATTTACGTCAAGTCCACAAAAATATGAGGTTTTATATTCGGCTTTCATGGATTATTACAAGGCATGGCTCGAGCTGATGGACCAAGCAGTAGTGGAGACAAATGCCTCTCAAATTAAACGTAACCGTGAAGCGCAACATCGATATCTAACTTGGAGAGCAGAAAAGGATCCTGGACATGGAGTTCTGAAAAGGTTGATTGGGGAGACACAAGCAAAGGATTTGCTGGTGAACTTCCTGTTCGATGGAATTGATAAACTAGGAAGCAAAAGTTTCCTGGAGTACTTTCCCGAGTACTGCTGTGAGGATGGGACTATAAATCAGAAACGTAGTATAATTGGAAAGTCTTATGAAAGTCGCCCGTGGGATAGAAAAGGAGAGTTTGTTAGTAGCAATTTTGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

335

Amino Acids

38.78

Weight (kDa)

8.73

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	63 - 282	8.5e-58	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	545
AciI	CCGC	4 cut(s)	121, 144, 196, 416
AclI	AACGTT	1 cut(s)	459
AclWI	GGATC	2 cut(s)	764, 777
AcsI	RAATTY	3 cut(s)	161, 374, 572
AfaI	GTAC	2 cut(s)	884, 896
AfiI	CCNNNNNNNGG	3 cut(s)	99, 545, 779
AgsI	TTSAA	5 cut(s)	272, 286, 470, 571, 1001
AjnI	CCWGG	3 cut(s)	222, 772, 876
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
AluBI	AGCT	5 cut(s)	42, 290, 532, 553, 676
AluI	AGCT	5 cut(s)	42, 290, 532, 553, 676
Alw26I	GTCTC	3 cut(s)	320, 692, 800
AlwI	GGATC	2 cut(s)	764, 777
Ama87I	CYCGRG	2 cut(s)	671, 890
AoxI	GGCC	2 cut(s)	207, 499
ApeKI	GCWGC	6 cut(s)	39, 106, 109, 112, 115, 118
ApoI	RAATTY	3 cut(s)	161, 374, 572
AspLEI	GCGC	1 cut(s)	736
AspS9I	GGNCC	3 cut(s)	208, 439, 682
AsuHPI	GGTGA	3 cut(s)	400, 573, 841
AvaI	CYCGRG	2 cut(s)	671, 890
AvaII	GGWCC	2 cut(s)	439, 682
BamHI	GGATCC	1 cut(s)	769
BbsI	GAAGAC	1 cut(s)	352
BbvI	GCAGC	6 cut(s)	51, 118, 121, 124, 127, 130
BccI	CCATC	4 cut(s)	248, 673, 839, 902
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	3 cut(s)	224, 774, 878
BcoDI	GTCTC	3 cut(s)	320, 692, 800
BfaI	CTAG	2 cut(s)	558, 860
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	8 cut(s)	40, 107, 110, 113, 116, 119, 122, 196
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	8 cut(s)	41, 108, 111, 114, 117, 120, 123, 197
BmcAI	AGTACT	2 cut(s)	884, 896
Bme1390I	CCNGG	3 cut(s)	224, 774, 878
Bme18I	GGWCC	2 cut(s)	439, 682
BmeT110I	CYCGRG	2 cut(s)	671, 890
BmgT120I	GGNCC	3 cut(s)	208, 439, 682
BmiI	GGNNCC	2 cut(s)	210, 771
BmrFI	CCNGG	3 cut(s)	224, 774, 878
BpiI	GAAGAC	1 cut(s)	352
BpmI	CTGGAG	2 cut(s)	206, 899
Bpu1102I	GCTNAGC	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	742
BsaAI	YACGTR	1 cut(s)	311
BsaJI	CCNNGG	4 cut(s)	240, 249, 539, 962
BsaXI	ACNNNNNCTCC	2 cut(s)	969, 999
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 545, 779
Bse1I	ACTGG	1 cut(s)	411
BseBI	CCWGG	3 cut(s)	224, 774, 878
BseCI	ATCGAT	1 cut(s)	742
BseDI	CCNNGG	4 cut(s)	240, 249, 539, 962
BseGI	GGATG	4 cut(s)	187, 259, 424, 913
BseLI	CCNNNNNNNGG	3 cut(s)	99, 545, 779
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	411
BseXI	GCAGC	6 cut(s)	51, 118, 121, 124, 127, 130
BshFI	GGCC	2 cut(s)	209, 501
BshVI	ATCGAT	1 cut(s)	742
BsiHKCI	CYCGRG	2 cut(s)	671, 890
BslFI	GGGAC	1 cut(s)	925
BslI	CCNNNNNNNGG	3 cut(s)	99, 545, 779
BsmAI	GTCTC	3 cut(s)	320, 692, 800
BsmFI	GGGAC	1 cut(s)	925
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	209, 501
BsoBI	CYCGRG	2 cut(s)	671, 890
Bsp143I	GATC	1 cut(s)	769
Bsp1720I	GCTNAGC	1 cut(s)	528
Bsp19I	CCATGG	3 cut(s)	240, 249, 539
BspACI	CCGC	4 cut(s)	121, 144, 196, 416
BspANI	GGCC	2 cut(s)	209, 501
BspCNI	CTCAG	1 cut(s)	520
BspDI	ATCGAT	1 cut(s)	742
BspLI	GGNNCC	2 cut(s)	210, 771
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	764, 777
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	4 cut(s)	240, 249, 539, 962
BssMI	GATC	1 cut(s)	769
BssT1I	CCWWGG	3 cut(s)	240, 249, 539
Bst2UI	CCWGG	3 cut(s)	224, 774, 878
Bst4CI	ACNGT	2 cut(s)	94, 728
Bst6I	CTCTTC	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	294, 528
BstDSI	CCRYGG	4 cut(s)	240, 249, 539, 962
BstF5I	GGATG	4 cut(s)	187, 259, 424, 913
BstHHI	GCGC	1 cut(s)	736
BstKTI	GATC	1 cut(s)	772
BstMAI	GTCTC	3 cut(s)	320, 692, 800
BstMBI	GATC	1 cut(s)	769
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 115, 118, 121
BstNI	CCWGG	3 cut(s)	224, 774, 878
BstSCI	CCNGG	3 cut(s)	222, 772, 876
BstSNI	TACGTA	1 cut(s)	311
BstV1I	GCAGC	6 cut(s)	51, 118, 121, 124, 127, 130
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	769
Bsu15I	ATCGAT	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	209, 501
BsuTUI	ATCGAT	1 cut(s)	742
BtgI	CCRYGG	4 cut(s)	240, 249, 539, 962
BtsCI	GGATG	4 cut(s)	187, 259, 424, 913
BtsIMutI	CAGTG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	331
CfoI	GCGC	1 cut(s)	736
Cfr13I	GGNCC	3 cut(s)	208, 439, 682
ClaI	ATCGAT	1 cut(s)	742
Csp6I	GTAC	2 cut(s)	883, 895
CviAII	CATG	6 cut(s)	241, 250, 540, 649, 666, 779
CviQI	GTAC	2 cut(s)	883, 895
DdeI	CTNAG	2 cut(s)	294, 528
DpnI	GATC	1 cut(s)	771
DpnII	GATC	1 cut(s)	769
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Eco105I	TACGTA	1 cut(s)	311
Eco130I	CCWWGG	3 cut(s)	240, 249, 539
Eco147I	AGGCCT	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	746
Eco47I	GGWCC	2 cut(s)	439, 682
Eco88I	CYCGRG	2 cut(s)	671, 890
EcoRII	CCWGG	3 cut(s)	222, 772, 876
EcoRV	GATATC	1 cut(s)	746
EcoT14I	CCWWGG	3 cut(s)	240, 249, 539
ErhI	CCWWGG	3 cut(s)	240, 249, 539
FaeI	CATG	6 cut(s)	244, 253, 543, 652, 669, 782
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	6 cut(s)	240, 249, 539, 648, 665, 778
Fnu4HI	GCNGC	8 cut(s)	40, 107, 110, 113, 116, 119, 122, 196
FokI	GGATG	4 cut(s)	194, 266, 431, 920
Fsp4HI	GCNGC	8 cut(s)	40, 107, 110, 113, 116, 119, 122, 196
FspBI	CTAG	2 cut(s)	558, 860
GlaI	GCGC	1 cut(s)	735
GluI	GCNGC	8 cut(s)	40, 107, 110, 113, 116, 119, 122, 196
GsuI	CTGGAG	2 cut(s)	206, 899
HaeIII	GGCC	2 cut(s)	209, 501
HhaI	GCGC	1 cut(s)	736
Hin1II	CATG	6 cut(s)	244, 253, 543, 652, 669, 782
Hin6I	GCGC	1 cut(s)	734
HinP1I	GCGC	1 cut(s)	734
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	3 cut(s)	185, 328, 563
HpaI	GTTAAC	1 cut(s)	424
HphI	GGTGA	3 cut(s)	400, 573, 841
Hpy166II	GTNNAC	3 cut(s)	424, 617, 832
Hpy188I	TCNGA	2 cut(s)	789, 924
Hpy188III	TCNNGA	1 cut(s)	890
Hpy8I	GTNNAC	3 cut(s)	424, 617, 832
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	2 cut(s)	94, 728
HpyCH4IV	ACGT	5 cut(s)	310, 459, 608, 721, 928
HpyCH4V	TGCA	3 cut(s)	263, 340, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 115, 118, 121
HpyF3I	CTNAG	2 cut(s)	294, 528
HpySE526I	ACGT	5 cut(s)	310, 459, 608, 721, 928
Hsp92II	CATG	6 cut(s)	244, 253, 543, 652, 669, 782
HspAI	GCGC	1 cut(s)	734
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	769
Lsp1109I	GCAGC	6 cut(s)	51, 118, 121, 124, 127, 130
MaeI	CTAG	2 cut(s)	558, 860
MaeII	ACGT	5 cut(s)	310, 459, 608, 721, 928
MaeIII	GTNAC	1 cut(s)	722
MalI	GATC	1 cut(s)	771
MboI	GATC	1 cut(s)	769
MboII	GAAGA	6 cut(s)	9, 12, 18, 21, 352, 397
MflI	RGATCY	1 cut(s)	769
MluCI	AATT	8 cut(s)	161, 235, 374, 572, 714, 849, 936, 994
MlyI	GAGTC	3 cut(s)	194, 322, 572
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	7 cut(s)	34, 230, 452, 519, 622, 718, 898
MseI	TTAA	3 cut(s)	35, 423, 717
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	121
MspR9I	CCNGG	3 cut(s)	224, 774, 878
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	224, 774, 878
MwoI	GCNNNNNNNGC	4 cut(s)	112, 115, 118, 121
NcoI	CCATGG	3 cut(s)	240, 249, 539
NdeII	GATC	1 cut(s)	769
NlaIII	CATG	6 cut(s)	244, 253, 543, 652, 669, 782
NlaIV	GGNNCC	2 cut(s)	210, 771
PaeR7I	CTCGAG	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	501
PctI	GAATGC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	545
PfoI	TCCNGGA	3 cut(s)	222, 772, 876
PkrI	GCNGC	8 cut(s)	41, 108, 111, 114, 117, 120, 123, 197
PleI	GAGTC	3 cut(s)	193, 322, 571
PpsI	GAGTC	3 cut(s)	193, 322, 571
Ppu21I	YACGTR	1 cut(s)	311
Psp1406I	AACGTT	1 cut(s)	459
Psp6I	CCWGG	3 cut(s)	222, 772, 876
PspGI	CCWGG	3 cut(s)	222, 772, 876
PspN4I	GGNNCC	2 cut(s)	210, 771
PspPI	GGNCC	3 cut(s)	208, 439, 682
PspXI	VCTCGAGB	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	2 cut(s)	884, 896
RsaNI	GTAC	2 cut(s)	883, 895
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	35, 423, 717
SatI	GCNGC	8 cut(s)	40, 107, 110, 113, 116, 119, 122, 196
Sau3AI	GATC	1 cut(s)	769
Sau96I	GGNCC	3 cut(s)	208, 439, 682
ScaI	AGTACT	2 cut(s)	884, 896
SchI	GAGTC	3 cut(s)	194, 322, 572
ScrFI	CCNGG	3 cut(s)	224, 774, 878
Sfr274I	CTCGAG	1 cut(s)	671
SinI	GGWCC	2 cut(s)	439, 682
SlaI	CTCGAG	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SnaBI	TACGTA	1 cut(s)	311
Sse9I	AATT	8 cut(s)	161, 235, 374, 572, 714, 849, 936, 994
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	4 cut(s)	121, 144, 196, 416
SspI	AATATT	1 cut(s)	390
SspMI	CTAG	2 cut(s)	558, 860
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	222, 772, 876
StyI	CCWWGG	3 cut(s)	240, 249, 539
TaaI	ACNGT	2 cut(s)	94, 728
TaiI	ACGT	5 cut(s)	313, 462, 611, 724, 931
TaqI	TCGA	3 cut(s)	672, 742, 843
TasI	AATT	8 cut(s)	161, 235, 374, 572, 714, 849, 936, 994
TatI	WGTACW	2 cut(s)	882, 894
TauI	GCSGC	2 cut(s)	124, 198
Tru1I	TTAA	3 cut(s)	35, 423, 717
Tru9I	TTAA	3 cut(s)	35, 423, 717
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	6 cut(s)	39, 106, 109, 112, 115, 118
TspDTI	ATGAA	3 cut(s)	154, 637, 966
TspRI	CASTG	1 cut(s)	418
Van91I	CCANNNNNTGG	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	439, 682
XapI	RAATTY	3 cut(s)	161, 374, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	671
XspI	CTAG	2 cut(s)	558, 860
ZrmI	AGTACT	2 cut(s)	884, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.