Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

6441557 .. 6442789

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0082700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAGTAACTCAATGTTAAGGTTGTGCTTGATCTTCCTAACCATGTCTATGATGGTCTTCATGTCATCAGCCATAACCCCCAGAGTTGGTTTCTATAGAACAAGTTGTCCTTCTGCAGAAGCAATTGTGAGAAAAGCTGTAAACAAAGCCGTGGCGAAGAATCCTGGCATTGCTGCTGGCCTTATCAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGTGATGCATCTGTCCTACTTGATTCAACTCCTGGAAAGCTATCTGAAAAAGAACATCCGGCAAACAACCCAAGCTTAAGAGGCTTTGAAGTGATCGATGAGGCAAAGGCGGAACTTGAATCTCTATGCCCGAGAACTGTGTCATGTGCTGACATTCTTGCATTCGCAGCTCGTGACGGTGCCTTGGCAGTTGGTGGCATAAACTACCAAGTGCCTTCAGGGAGGCGTGATGGGAGAGTTTCATTATTTGACGACCCTTCCCAAGATCTTCCTTCTCCTTCTTCGAATGCCAAGGAGCTCGGGGATAGTTTTGCACGCAAAGGCTTTAGCTTGGATGAAATGGTCACATTATCTGGGGCGCATTCCATTGGTGTGTCACATTGTTCTTCCTTCTCGAACCGCTTGTATTCCTTCAATAAAACTCACCCACAAGACCCTTCCTTGGATCCCAAGTTTGCTAGGGACTTGAAAGCCAAGTGTCCTCCATCCTCATCAAACAATGTAGTCCAACTTGATGGTCTTACACCAAACAGGCTTGACAATAAGTACTACACTAACTTGATGAACCATCGTGGCCTATTTGAGTCGGATCAAACTCTTCTTAGCAGCCATTCAACGGCGGGGATGGTGAGGAATAATGCTAGACTTGGTCCAGCTTGGGCTAAGAATTTTGCATCCGCTATGGTGAAAATGGGTTCCATTGATATCCTCACAGGAAGACAGGGTGAGATCAGAAAAAAGTGCAGGGTTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

325

Amino Acids

35.31

Weight (kDa)

9.15

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	43 - 287	5.5e-86	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AciI	CCGC	4 cut(s)	329, 619, 839, 897
AclWI	GGATC	3 cut(s)	659, 672, 816
AcsI	RAATTY	1 cut(s)	886
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	3 cut(s)	86, 661, 835
AflII	CTTAAG	1 cut(s)	295
AgsI	TTSAA	6 cut(s)	246, 308, 338, 634, 688, 834
AjnI	CCWGG	2 cut(s)	163, 250
AloI	GAACNNNNNNTCC	2 cut(s)	91, 123
AluBI	AGCT	7 cut(s)	137, 259, 294, 389, 517, 549, 875
AluI	AGCT	7 cut(s)	137, 259, 294, 389, 517, 549, 875
Alw21I	GWGCWC	1 cut(s)	519
AlwI	GGATC	3 cut(s)	659, 672, 816
Ama87I	CYCGRG	2 cut(s)	349, 518
AoxI	GGCC	2 cut(s)	178, 793
ApeKI	GCWGC	3 cut(s)	173, 386, 825
ApoI	RAATTY	1 cut(s)	886
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	869
AsuHPI	GGTGA	4 cut(s)	635, 859, 916, 956
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	2 cut(s)	349, 518
AvaII	GGWCC	1 cut(s)	869
BamHI	GGATCC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	519
BauI	CACGAG	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	49, 943
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	3 cut(s)	160, 398, 837
BccI	CCATC	6 cut(s)	46, 443, 712, 728, 795, 838
BceAI	ACGGC	2 cut(s)	134, 852
BciT130I	CCWGG	2 cut(s)	165, 252
BfaI	CTAG	3 cut(s)	678, 861, 976
BfmI	CTRYAG	2 cut(s)	94, 114
BfrI	CTTAAG	1 cut(s)	295
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	3 cut(s)	174, 387, 826
BlsI	GCNGC	3 cut(s)	175, 388, 827
BmcAI	AGTACT	1 cut(s)	767
Bme1390I	CCNGG	2 cut(s)	165, 252
Bme18I	GGWCC	1 cut(s)	869
BmeT110I	CYCGRG	2 cut(s)	349, 518
BmgT120I	GGNCC	1 cut(s)	869
BmiI	GGNNCC	3 cut(s)	400, 666, 916
BmrFI	CCNGG	2 cut(s)	165, 252
BmsI	GCATC	3 cut(s)	214, 236, 902
BpiI	GAAGAC	2 cut(s)	49, 943
Bpu14I	TTCGAA	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	315
BsaJI	CCNNGG	4 cut(s)	150, 402, 510, 660
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 661, 835
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	165, 252
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	4 cut(s)	150, 402, 510, 660
BseGI	GGATG	5 cut(s)	274, 559, 704, 849, 893
BseLI	CCNNNNNNNGG	3 cut(s)	86, 661, 835
BseMI	GCAATG	1 cut(s)	168
BseXI	GCAGC	3 cut(s)	160, 398, 837
BshFI	GGCC	2 cut(s)	180, 795
BshNI	GGYRCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	2 cut(s)	349, 518
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	3 cut(s)	86, 661, 835
BsmFI	GGGAC	1 cut(s)	695
BsmI	GAATGC	4 cut(s)	195, 380, 511, 580
BsnI	GGCC	2 cut(s)	180, 795
BsoBI	CYCGRG	2 cut(s)	349, 518
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	6 cut(s)	30, 312, 484, 664, 808, 948
BspACI	CCGC	4 cut(s)	329, 619, 839, 897
BspANI	GGCC	2 cut(s)	180, 795
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	400, 666, 916
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	3 cut(s)	659, 672, 816
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	398
BspTI	CTTAAG	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	4 cut(s)	150, 402, 510, 660
BssMI	GATC	6 cut(s)	30, 312, 484, 664, 808, 948
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	3 cut(s)	402, 510, 660
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	165, 252
Bst4CI	ACNGT	2 cut(s)	358, 398
Bst6I	CTCTTC	1 cut(s)	822
BstAFI	CTTAAG	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	178, 535
BstDEI	CTNAG	2 cut(s)	821, 882
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	5 cut(s)	274, 559, 704, 849, 893
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	6 cut(s)	33, 315, 487, 667, 811, 951
BstMBI	GATC	6 cut(s)	30, 312, 484, 664, 808, 948
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 386
BstNI	CCWGG	2 cut(s)	165, 252
BstSCI	CCNGG	2 cut(s)	163, 250
BstSFI	CTRYAG	2 cut(s)	94, 114
BstV1I	GCAGC	3 cut(s)	160, 398, 837
BstV2I	GAAGAC	2 cut(s)	49, 943
BstX2I	RGATCY	2 cut(s)	484, 664
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	2 cut(s)	484, 664
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	180, 795
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	5 cut(s)	274, 559, 704, 849, 893
Cac8I	GCNNGC	2 cut(s)	178, 535
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	869
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	766
CviAII	CATG	4 cut(s)	43, 61, 200, 363
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	2 cut(s)	821, 882
DpnI	GATC	6 cut(s)	32, 314, 486, 666, 810, 950
DpnII	GATC	6 cut(s)	30, 312, 484, 664, 808, 948
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
EciI	GGCGGA	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	3 cut(s)	402, 510, 660
Eco24I	GRGCYC	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	925
Eco47I	GGWCC	1 cut(s)	869
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	2 cut(s)	349, 518
EcoICRI	GAGCTC	1 cut(s)	517
EcoRII	CCWGG	2 cut(s)	163, 250
EcoRV	GATATC	1 cut(s)	925
EcoT14I	CCWWGG	3 cut(s)	402, 510, 660
EcoT22I	ATGCAT	2 cut(s)	195, 229
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	3 cut(s)	402, 510, 660
FaeI	CATG	4 cut(s)	46, 64, 203, 366
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	4 cut(s)	42, 60, 199, 362
FauI	CCCGC	1 cut(s)	832
Fnu4HI	GCNGC	3 cut(s)	174, 387, 826
FokI	GGATG	5 cut(s)	261, 566, 691, 856, 880
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	3 cut(s)	174, 387, 826
FspBI	CTAG	3 cut(s)	678, 861, 976
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	3 cut(s)	174, 387, 826
HaeIII	GGCC	2 cut(s)	180, 795
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	46, 64, 203, 366
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	4 cut(s)	160, 242, 338, 803
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	4 cut(s)	635, 859, 916, 956
Hpy166II	GTNNAC	2 cut(s)	142, 973
Hpy188I	TCNGA	4 cut(s)	188, 265, 808, 953
Hpy188III	TCNNGA	2 cut(s)	392, 613
Hpy8I	GTNNAC	2 cut(s)	142, 973
HpyAV	CCTTC	8 cut(s)	120, 444, 486, 501, 507, 619, 640, 666
HpyCH4III	ACNGT	2 cut(s)	358, 398
HpyCH4V	TGCA	7 cut(s)	116, 193, 227, 380, 533, 893, 963
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 386
HpyF3I	CTNAG	2 cut(s)	821, 882
Hsp92II	CATG	4 cut(s)	46, 64, 203, 366
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	6 cut(s)	30, 312, 484, 664, 808, 948
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	3 cut(s)	160, 398, 837
LweI	GCATC	3 cut(s)	214, 236, 902
MaeI	CTAG	3 cut(s)	678, 861, 976
MaeIII	GTNAC	4 cut(s)	5, 392, 562, 594
MalI	GATC	6 cut(s)	32, 314, 486, 666, 810, 950
MboI	GATC	6 cut(s)	30, 312, 484, 664, 808, 948
MboII	GAAGA	8 cut(s)	25, 49, 169, 479, 492, 597, 809, 948
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	2 cut(s)	484, 664
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	2 cut(s)	123, 886
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	2 cut(s)	751, 786
MnlI	CCTC	7 cut(s)	293, 313, 435, 711, 718, 843, 938
Mph1103I	ATGCAT	2 cut(s)	195, 229
MseI	TTAA	2 cut(s)	17, 296
MslI	CAYNNNNRTG	3 cut(s)	47, 198, 590
MspCI	CTTAAG	1 cut(s)	295
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	165, 252
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	4 cut(s)	195, 380, 511, 580
MvaI	CCWGG	2 cut(s)	165, 252
MwoI	GCNNNNNNNGC	2 cut(s)	300, 386
NdeII	GATC	6 cut(s)	30, 312, 484, 664, 808, 948
NlaIII	CATG	4 cut(s)	46, 64, 203, 366
NlaIV	GGNNCC	3 cut(s)	400, 666, 916
NmuCI	GTSAC	3 cut(s)	392, 562, 594
NsiI	ATGCAT	2 cut(s)	195, 229
NspV	TTCGAA	1 cut(s)	503
PctI	GAATGC	4 cut(s)	195, 380, 511, 580
PfeI	GAWTC	3 cut(s)	160, 242, 338
PflFI	GACNNNGTC	1 cut(s)	867
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	175, 388, 827
PleI	GAGTC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	811
Psp124BI	GAGCTC	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	163, 250
PspGI	CCWGG	2 cut(s)	163, 250
PspN4I	GGNNCC	3 cut(s)	400, 666, 916
PspPI	GGNCC	1 cut(s)	869
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	484, 664
PsyI	GACNNNGTC	1 cut(s)	867
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
RseI	CAYNNNNRTG	3 cut(s)	47, 198, 590
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	17, 296
SatI	GCNGC	3 cut(s)	174, 387, 826
Sau3AI	GATC	6 cut(s)	30, 312, 484, 664, 808, 948
Sau96I	GGNCC	1 cut(s)	869
ScaI	AGTACT	1 cut(s)	767
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	2 cut(s)	165, 252
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	8 cut(s)	23, 139, 261, 296, 391, 519, 551, 877
SfaNI	GCATC	3 cut(s)	214, 236, 902
SfcI	CTRYAG	2 cut(s)	94, 114
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	1 cut(s)	869
SmiMI	CAYNNNNRTG	3 cut(s)	47, 198, 590
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	123, 886
SsiI	CCGC	4 cut(s)	329, 619, 839, 897
SspMI	CTAG	3 cut(s)	678, 861, 976
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	163, 250
StyI	CCWWGG	3 cut(s)	402, 510, 660
TaaI	ACNGT	2 cut(s)	358, 398
TaqI	TCGA	3 cut(s)	315, 503, 614
TasI	AATT	2 cut(s)	123, 886
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	3 cut(s)	160, 242, 338
Tru1I	TTAA	2 cut(s)	17, 296
Tru9I	TTAA	2 cut(s)	17, 296
TseFI	GTSAC	3 cut(s)	392, 562, 594
TseI	GCWGC	3 cut(s)	173, 386, 825
Tsp45I	GTSAC	3 cut(s)	392, 562, 594
TspDTI	ATGAA	4 cut(s)	49, 450, 570, 797
Tth111I	GACNNNGTC	1 cut(s)	867
Vha464I	CTTAAG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	869
XapI	RAATTY	1 cut(s)	886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	3 cut(s)	678, 861, 976
ZrmI	AGTACT	1 cut(s)	767
Zsp2I	ATGCAT	2 cut(s)	195, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.