Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Reverse (-)

8347793 .. 8348801

Gene Structure 1009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGGGACAAGGGCTTGCTACCCGGGGTGGACGTAGCGAATCTTCCTGAAGAAGATAAGAACAGATTGGCCAATGTGATCGACATGCTTCAGATTCGTGACAGTTTGAAGATGTATAATTCATTGGTGGAGAGTTGTTTCAATGACTGTGTGGATAGCTTTACGCGCAAGTCCCTGACCAAGCAAGAGGAAAAGTGTGTTCGGAGGTGTGCTGAGAAGTTCCTGAAGCATTCGATGCGTGTTGGCATGAGATTTGGTGAGCTGAACCAGGGAGCAGCCACCCAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

97

Amino Acids

10.89

Weight (kDa)

6.57

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	30 - 86	3.7e-21	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	69
AcuI	CTGAAG	3 cut(s)	69, 74, 245
AgsI	TTSAA	2 cut(s)	109, 142
AjnI	CCWGG	2 cut(s)	267, 282
AluBI	AGCT	2 cut(s)	159, 262
AluI	AGCT	2 cut(s)	159, 262
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	168
AsuC2I	CCSGG	2 cut(s)	24, 25
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BbvI	GCAGC	1 cut(s)	287
BciT130I	CCWGG	2 cut(s)	269, 284
BcnI	CCSGG	2 cut(s)	24, 25
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	4 cut(s)	24, 25, 269, 284
BmeT110I	CYCGRG	1 cut(s)	23
BmrFI	CCNGG	4 cut(s)	24, 25, 269, 284
BmsI	GCATC	1 cut(s)	225
BpuMI	CCSGG	2 cut(s)	24, 25
BsaJI	CCNNGG	4 cut(s)	23, 24, 268, 282
BseBI	CCWGG	2 cut(s)	269, 284
BseDI	CCNNGG	4 cut(s)	23, 24, 268, 282
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	2 cut(s)	20, 157
BsmFI	GGGAC	2 cut(s)	20, 157
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	166
BssECI	CCNNGG	4 cut(s)	23, 24, 268, 282
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	269, 284
Bst4CI	ACNGT	2 cut(s)	104, 149
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 235
BstNI	CCWGG	2 cut(s)	269, 284
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	4 cut(s)	22, 23, 267, 282
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	168
Cfr9I	CCCGGG	1 cut(s)	23
CviAII	CATG	2 cut(s)	85, 247
CviJI	RGCY	5 cut(s)	15, 71, 159, 262, 278
CviKI_1	RGCY	5 cut(s)	15, 71, 159, 262, 278
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	69
Eco57I	CTGAAG	3 cut(s)	69, 74, 245
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	267, 282
FaeI	CATG	2 cut(s)	88, 250
FaiI	YATR	3 cut(s)	86, 117, 248
FaqI	GGGAC	2 cut(s)	20, 157
FatI	CATG	2 cut(s)	84, 246
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	88, 250
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	40, 94
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	93, 204
Hpy188III	TCNNGA	3 cut(s)	47, 98, 223
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	104, 149
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 235
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	88, 250
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	7 cut(s)	37, 60, 188, 236, 254, 269, 281
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	35, 62, 65, 121
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	1 cut(s)	118
MluNI	TGGCCA	1 cut(s)	71
MnlI	CCTC	2 cut(s)	181, 198
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	4 cut(s)	24, 25, 269, 284
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	269, 284
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	165, 235
NciI	CCSGG	2 cut(s)	24, 25
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	2 cut(s)	88, 250
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	88
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	40, 94
PkrI	GCNGC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	267, 282
PspGI	CCWGG	2 cut(s)	267, 282
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	78
ScrFI	CCNGG	4 cut(s)	24, 25, 269, 284
SetI	ASST	4 cut(s)	36, 161, 209, 264
SfaNI	GCATC	1 cut(s)	225
SmaI	CCCGGG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	118
StyD4I	CCNGG	4 cut(s)	22, 23, 267, 282
TaaI	ACNGT	2 cut(s)	104, 149
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	81, 233
TasI	AATT	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	40, 94
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	111
TspMI	CCCGGG	1 cut(s)	23
XceI	RCATGY	1 cut(s)	88
XmaI	CCCGGG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.