Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Reverse (-)

7797638 .. 7800238

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1093400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGATAAGAGCATGATAGGAGATCTGGATTCGCTTCCAGAGGAAGATAAGATGAGAATGGCCACCATGATCGACCAGCTCCAGATCCGCGACAGTTTGAGAATGTATAACTCACTTGTTGAGAGATGCTTCAATGATTGTGTCGACACCTTTAAGCACAAATCACTGCAGAAGCAAGAGGAAACCTGTGTCAGGCGATGTGCCGAGAAGTTCCTAAAGCATTCCATGCGTGTTGGCATGAGAGGTTTGCAGAGCTCAACCAGGGCGCTGCGACACAAGATTAGTCATCAAATCAGCAAAGGAGTAGAAAAGCGCGCCTTCATTCCCGTCTTAGCCTGTTGTTGCCTTGTTTTTTCCTGGAGAATCTCCCCCCCTTTCTTTACATATAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

132

Amino Acids

15.35

Weight (kDa)

9.32

Isoelectric Point (pI)

60.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	23 - 81	1.1e-20	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	90, 315
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	260, 356
AluBI	AGCT	2 cut(s)	79, 255
AluI	AGCT	2 cut(s)	79, 255
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	268
AspLEI	GCGC	3 cut(s)	268, 315, 317
BalI	TGGCCA	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	255
BciT130I	CCWGG	2 cut(s)	262, 358
BfmI	CTRYAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	269
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	262, 358
BmrFI	CCNGG	2 cut(s)	262, 358
BmsI	GCATC	1 cut(s)	116
BpmI	CTGGAG	2 cut(s)	65, 379
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	262, 358
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	192
BsePI	GCGCGC	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	255
Bsh1236I	CGCG	2 cut(s)	90, 315
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	3 cut(s)	22, 69, 84
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	62
BspFNI	CGCG	2 cut(s)	90, 315
BspMAI	CTGCAG	1 cut(s)	171
BspPI	GGATC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	261
BssHII	GCGCGC	1 cut(s)	313
BssMI	GATC	3 cut(s)	22, 69, 84
Bst2UI	CCWGG	2 cut(s)	262, 358
Bst4CI	ACNGT	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	331
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstFNI	CGCG	2 cut(s)	90, 315
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	3 cut(s)	268, 315, 317
BstKTI	GATC	3 cut(s)	25, 72, 87
BstMBI	GATC	3 cut(s)	22, 69, 84
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	2 cut(s)	262, 358
BstSCI	CCNGG	2 cut(s)	260, 356
BstSFI	CTRYAG	1 cut(s)	167
BstUI	CGCG	2 cut(s)	90, 315
BstV1I	GCAGC	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	22, 84
BstYI	RGATCY	2 cut(s)	22, 84
BsuRI	GGCC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	3 cut(s)	268, 315, 317
CviAII	CATG	4 cut(s)	13, 67, 226, 238
CviJI	RGCY	4 cut(s)	62, 79, 255, 335
CviKI_1	RGCY	4 cut(s)	62, 79, 255, 335
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	3 cut(s)	24, 71, 86
DpnII	GATC	3 cut(s)	22, 69, 84
EaeI	YGGCCR	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	260, 356
EcoT38I	GRGCYC	1 cut(s)	257
FaeI	CATG	4 cut(s)	16, 70, 229, 241
FaiI	YATR	7 cut(s)	14, 68, 108, 227, 239, 385, 387
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	4 cut(s)	12, 66, 225, 237
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	269
GlaI	GCGC	3 cut(s)	267, 314, 316
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	2 cut(s)	65, 379
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	3 cut(s)	268, 315, 317
Hin1II	CATG	4 cut(s)	16, 70, 229, 241
Hin6I	GCGC	3 cut(s)	266, 313, 315
HinP1I	GCGC	3 cut(s)	266, 313, 315
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	29, 363
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	26, 38, 82
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	169, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	16, 70, 229, 241
HspAI	GCGC	3 cut(s)	266, 313, 315
Kzo9I	GATC	3 cut(s)	22, 69, 84
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	116
MalI	GATC	3 cut(s)	24, 71, 86
MboI	GATC	3 cut(s)	22, 69, 84
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	2 cut(s)	22, 84
MhlI	GDGCHC	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	62
MnlI	CCTC	3 cut(s)	34, 172, 236
Mox20I	TGGCCA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	262, 358
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	262, 358
MvnI	CGCG	2 cut(s)	90, 315
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeII	GATC	3 cut(s)	22, 69, 84
NlaIII	CATG	4 cut(s)	16, 70, 229, 241
NmeAIII	GCCGAG	1 cut(s)	229
PauI	GCGCGC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	29, 363
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	260, 356
PspGI	CCWGG	2 cut(s)	260, 356
PstI	CTGCAG	1 cut(s)	171
PsuI	RGATCY	2 cut(s)	22, 84
PteI	GCGCGC	1 cut(s)	313
SacI	GAGCTC	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	22, 69, 84
ScrFI	CCNGG	2 cut(s)	262, 358
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	5 cut(s)	81, 152, 188, 247, 257
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	167
SsiI	CCGC	1 cut(s)	88
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	260, 356
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	72, 144
TfiI	GAWTC	2 cut(s)	29, 363
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.