Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003352.1

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

11902 .. 13364

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003352.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgataggagatctggattcgcttccagaggaagataagctcagaatggccaccatgatcgaccagctccaaatccgcgacagtttaaggatgtacaactcacttgtcgagagatgcttcaatgattgtgttgacactttcaagcacaaatcactgcagaagcaagaggaaacctgtgttcggcgatgtgctgagaagtttctcaagcattcgatgcgcgttggcatgaggtttgcagagcttaaccagggagctgcaacccaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

89

Amino Acids

10.42

Weight (kDa)

6.1

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	78, 219
AciI	CCGC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	121, 142
AjnI	CCWGG	2 cut(s)	246, 261
AluBI	AGCT	4 cut(s)	40, 67, 241, 254
AluI	AGCT	4 cut(s)	40, 67, 241, 254
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	219
BalI	TGGCCA	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	248, 263
BfaI	CTAG	1 cut(s)	268
BfmI	CTRYAG	1 cut(s)	155
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	248, 263
BmrFI	CCNGG	2 cut(s)	248, 263
BmsI	GCATC	2 cut(s)	104, 204
BpuEI	CTTGAG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	247, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	248, 263
BseDI	CCNNGG	2 cut(s)	247, 261
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	55, 183
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	2 cut(s)	78, 219
BshFI	GGCC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	10, 57
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	54, 184
BspFNI	CGCG	2 cut(s)	78, 219
BspMAI	CTGCAG	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	247, 261
BssMI	GATC	2 cut(s)	10, 57
Bst2UI	CCWGG	2 cut(s)	248, 263
Bst4CI	ACNGT	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstAUI	TGTACA	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	41, 192
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	2 cut(s)	78, 219
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	13, 60
BstMBI	GATC	2 cut(s)	10, 57
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	2 cut(s)	248, 263
BstSCI	CCNGG	2 cut(s)	246, 261
BstSFI	CTRYAG	1 cut(s)	155
BstUI	CGCG	2 cut(s)	78, 219
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	55, 226
CviJI	RGCY	5 cut(s)	40, 50, 67, 241, 254
CviKI_1	RGCY	5 cut(s)	40, 50, 67, 241, 254
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	41, 192
DpnI	GATC	2 cut(s)	12, 59
DpnII	GATC	2 cut(s)	10, 57
EaeI	YGGCCR	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	246, 261
FaeI	CATG	2 cut(s)	58, 229
FaiI	YATR	2 cut(s)	56, 227
FatI	CATG	2 cut(s)	54, 225
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	268
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	58, 229
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	3 cut(s)	14, 26, 109
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	157, 236, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	41, 192
Hsp92II	CATG	2 cut(s)	58, 229
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	10, 57
LmnI	GCTCC	2 cut(s)	72, 251
LpnPI	CCDG	6 cut(s)	39, 77, 187, 233, 248, 260
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	104, 204
MaeI	CTAG	1 cut(s)	268
MalI	GATC	2 cut(s)	12, 59
MboI	GATC	2 cut(s)	10, 57
MboII	GAAGA	1 cut(s)	44
MflI	RGATCY	1 cut(s)	10
MlsI	TGGCCA	1 cut(s)	50
MluNI	TGGCCA	1 cut(s)	50
MnlI	CCTC	3 cut(s)	22, 160, 222
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	2 cut(s)	86, 243
Msp20I	TGGCCA	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	248, 263
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	2 cut(s)	248, 263
MvnI	CGCG	2 cut(s)	78, 219
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	2 cut(s)	10, 57
NlaIII	CATG	2 cut(s)	58, 229
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	246, 261
PspGI	CCWGG	2 cut(s)	246, 261
PstI	CTGCAG	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	86, 243
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	10, 57
ScrFI	CCNGG	2 cut(s)	248, 263
SetI	ASST	6 cut(s)	42, 69, 176, 233, 243, 256
SfaNI	GCATC	2 cut(s)	104, 204
SfcI	CTRYAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	246, 261
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	3 cut(s)	60, 108, 212
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	86, 243
Tru9I	TTAA	2 cut(s)	86, 243
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	1 cut(s)	254
TspRI	CASTG	1 cut(s)	159
XspI	CTAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.