Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

21494064 .. 21500373

Gene Structure 6310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1129100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGAGAAGGGCATGCTGTCTGCAGACTTGGAGGGTCTTCCCGAAGAAGACAAGCACAGAATGACCACCTTGATCGACCAACTCCAGATTCGAGACAGTCTGAGGATGTACAATTCATTGGTGGAGAGATGCTTTACCGACTGCGTGGACACCTTTCAGCGCAAATCGTTGACGAAGCAAGAGGATACGTGTGTTCGTAGGTGTGCTGAGAAGTTCCTAAAGCACTCGATGCGCGTTGGCATGAGGTTTGCAGAGCTTAATCAAGGAGCAGCTACTCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

95

Amino Acids

10.96

Weight (kDa)

6.12

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	25 - 85	2e-21	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	2 cut(s)	256, 272
AluI	AGCT	2 cut(s)	256, 272
Alw26I	GTCTC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	269
AspLEI	GCGC	2 cut(s)	162, 234
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BbsI	GAAGAC	2 cut(s)	29, 54
BbvI	GCAGC	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmsI	GCATC	2 cut(s)	119, 219
BpiI	GAAGAC	2 cut(s)	29, 54
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	189
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	92, 198
BseXI	GCAGC	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	93, 199
BspFNI	CGCG	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	108
BssMI	GATC	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	101, 207
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	162, 234
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	21
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	2 cut(s)	29, 54
BsuI	GTATCC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	2 cut(s)	162, 234
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	13, 241
CviJI	RGCY	2 cut(s)	256, 272
CviKI_1	RGCY	2 cut(s)	256, 272
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	101, 207
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
FaeI	CATG	2 cut(s)	16, 244
FaiI	YATR	2 cut(s)	14, 242
FatI	CATG	2 cut(s)	12, 240
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	270
GlaI	GCGC	2 cut(s)	161, 233
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	68
HhaI	GCGC	2 cut(s)	162, 234
Hin1II	CATG	2 cut(s)	16, 244
Hin6I	GCGC	2 cut(s)	160, 232
HinP1I	GCGC	2 cut(s)	160, 232
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	148, 171
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	4 cut(s)	41, 85, 92, 278
Hpy8I	GTNNAC	2 cut(s)	148, 171
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	23, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	2 cut(s)	101, 207
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	16, 244
HspAI	GCGC	2 cut(s)	160, 232
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	1 cut(s)	98
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	2 cut(s)	119, 219
MaeII	ACGT	1 cut(s)	188
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	29, 56, 59
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	4 cut(s)	25, 96, 175, 237
MseI	TTAA	1 cut(s)	258
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	16, 244
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	72
SetI	ASST	7 cut(s)	71, 155, 191, 203, 248, 258, 274
SfaNI	GCATC	2 cut(s)	119, 219
SfcI	CTRYAG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	3 cut(s)	75, 91, 227
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	105
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.