Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

36677976 .. 36678550

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCCACCACAATCGACCAGCTTCAGATTCATGACAGTGTGAGGATGTATAATTCATTGGTGGAGAGCTGTTACAGTGACTGCGTAGACAGCTTTACGCCCAAGGCCCTGCCCAAGCAAGAGGAAACGTGTGTTCAAAGGTGTGCTAAGAAGTTCCTGAAGCATTCAATGCGTGTTGGTATGAGATTTGGGGAGCTCAACCAAGGAGCAACTACCCAGGAATCCAGGATCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

78

Amino Acids

8.9

Weight (kDa)

6.71

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	6 - 64	4.6e-19	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	8, 179
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	137, 168
AjnI	CCWGG	2 cut(s)	216, 224
AluBI	AGCT	4 cut(s)	22, 69, 93, 196
AluI	AGCT	4 cut(s)	22, 69, 93, 196
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	81
AoxI	GGCC	2 cut(s)	3, 105
AspS9I	GGNCC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	218, 226
Bme1390I	CCNGG	2 cut(s)	218, 226
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	218, 226
Bsa29I	ATCGAT	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	102, 202, 216
BseBI	CCWGG	2 cut(s)	218, 226
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	102, 202, 216
BseGI	GGATG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	5, 107
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	5, 107
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	5, 107
BspDI	ATCGAT	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	31
BspPI	GGATC	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	102, 202, 216
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	102, 202
Bst2UI	CCWGG	2 cut(s)	218, 226
Bst4CI	ACNGT	2 cut(s)	38, 77
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 169
BstNI	CCWGG	2 cut(s)	218, 226
BstSCI	CCNGG	2 cut(s)	216, 224
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	5, 107
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	43, 82
CaiI	CAGNNNCTG	1 cut(s)	81
CciI	TCATGA	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	231
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	6 cut(s)	5, 22, 69, 93, 107, 196
CviKI_1	RGCY	6 cut(s)	5, 22, 69, 93, 107, 196
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	102, 202
Eco24I	GRGCYC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	8, 179
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	216, 224
EcoT14I	CCWWGG	2 cut(s)	102, 202
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	102, 202
FaeI	CATG	1 cut(s)	35
FaiI	YATR	3 cut(s)	33, 51, 182
FatI	CATG	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	5, 107
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	2 cut(s)	28, 221
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	2 cut(s)	32, 157
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	38, 77
HpyCH4IV	ACGT	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 169
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	193, 206
LpnPI	CCDG	6 cut(s)	32, 122, 170, 203, 211, 230
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	71, 77
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	52
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	36, 115
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	218, 226
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	2 cut(s)	218, 226
MwoI	GCNNNNNNNGC	2 cut(s)	90, 169
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	31
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	28, 221
PfoI	TCCNGGA	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	216, 224
PspGI	CCWGG	2 cut(s)	216, 224
PspPI	GGNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	218, 226
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	6 cut(s)	24, 71, 95, 131, 143, 198
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	52
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	216, 224
StyI	CCWWGG	2 cut(s)	102, 202
TaaI	ACNGT	2 cut(s)	38, 77
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	15, 231
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	28, 221
TscAI	CASTG	2 cut(s)	43, 82
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	20, 45
TspRI	CASTG	2 cut(s)	43, 82
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.