Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

30954702 .. 30956809

Gene Structure 2108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGATAAGAGCATGCTAGGAGATCTGAATTCACTTCCAGCTGAAGATCAGCAGAGAATGGCCTCCATGATCGACCAGCTCCAAATCCGCGACAGTTTAAGGATGTACAACTCACTTGTTGAGAGATGCTTCAATGATTGTGTTGACACTTTCAAGCACAAATCACTGCAGAAGCAAGAGGAAACCTGTGTTAAACGATGTGCTGAGAAGTTTCTCAAGCATTCAATGCGCGTCGGTATGAGATTTGCAGAGCTCAACCAGGGAGCTGCAACCCAGGACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

6.11

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	23 - 84	7.1e-22	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	90, 231
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	133, 154, 225
AjnI	CCWGG	2 cut(s)	258, 273
AluBI	AGCT	4 cut(s)	41, 79, 253, 266
AluI	AGCT	4 cut(s)	41, 79, 253, 266
Alw21I	GWGCWC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	260, 275
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	167
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	260, 275
BmrFI	CCNGG	2 cut(s)	260, 275
BmsI	GCATC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	259, 273
BseBI	CCWGG	2 cut(s)	260, 275
BseDI	CCNNGG	2 cut(s)	259, 273
BseGI	GGATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	90, 231
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	22, 46, 69
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	90, 231
BspMAI	CTGCAG	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	259, 273
BssMI	GATC	3 cut(s)	22, 46, 69
Bst2UI	CCWGG	2 cut(s)	260, 275
Bst4CI	ACNGT	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	2 cut(s)	90, 231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	25, 49, 72
BstMBI	GATC	3 cut(s)	22, 46, 69
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	2 cut(s)	260, 275
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	258, 273
BstSFI	CTRYAG	1 cut(s)	167
BstUI	CGCG	2 cut(s)	90, 231
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	231
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	13, 67
CviJI	RGCY	5 cut(s)	41, 62, 79, 253, 266
CviKI_1	RGCY	5 cut(s)	41, 62, 79, 253, 266
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	3 cut(s)	24, 48, 71
DpnII	GATC	3 cut(s)	22, 46, 69
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	258, 273
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	2 cut(s)	16, 70
FaiI	YATR	3 cut(s)	14, 68, 239
FatI	CATG	2 cut(s)	12, 66
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	62
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	16, 70
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	169, 248, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	16, 70
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	22, 46, 69
LmnI	GCTCC	2 cut(s)	84, 263
LpnPI	CCDG	6 cut(s)	51, 89, 199, 245, 260, 272
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	17
MalI	GATC	3 cut(s)	24, 48, 71
MboI	GATC	3 cut(s)	22, 46, 69
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	2 cut(s)	73, 172
MseI	TTAA	2 cut(s)	98, 192
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	260, 275
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	260, 275
MvnI	CGCG	2 cut(s)	90, 231
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeII	GATC	3 cut(s)	22, 46, 69
NlaIII	CATG	2 cut(s)	16, 70
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	258, 273
PspGI	CCWGG	2 cut(s)	258, 273
PstI	CTGCAG	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	98, 192
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	3 cut(s)	22, 46, 69
ScrFI	CCNGG	2 cut(s)	260, 275
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	5 cut(s)	43, 81, 188, 255, 268
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	258, 273
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	28
TatI	WGTACW	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	98, 192
Tru9I	TTAA	2 cut(s)	98, 192
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.