Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

16142907 .. 16143536

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGAGAAGGGCATGCTGTCTGCAGACTTGGAGGGTCTTCCCGAAGAAGACAAGCACAGAATGGCCACCTTGATCGATCAGCTCCAGATTCGAGACAGTCTGAGGATGTATAATTCATTGGTGGAGAGGTGCTTTACTGACTGCGTAGACACCTTTTATCGCAAAGCGCTGACGAAGCAAGAGGATACGTGCGTTCGTAGGTGCGCTGAGAAGTTCCTCAAGCACTCGATGCGCGTTGGCATGAGGTTTGCAGAGCTTAATCAAGGAGCTGGTACTCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

6.11

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	25 - 85	6.4e-21	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	1 cut(s)	274
AfeI	AGCGCT	1 cut(s)	168
AluBI	AGCT	3 cut(s)	82, 256, 269
AluI	AGCT	3 cut(s)	82, 256, 269
Alw26I	GTCTC	1 cut(s)	87
Aor51HI	AGCGCT	1 cut(s)	168
AoxI	GGCC	1 cut(s)	63
AspLEI	GCGC	3 cut(s)	169, 206, 234
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BalI	TGGCCA	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	29, 54
BciVI	GTATCC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	29, 54
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	203, 261
Bsa29I	ATCGAT	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	75
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	92, 198
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	72, 76
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	93, 199
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	25
BssMI	GATC	2 cut(s)	72, 76
Bst4CI	ACNGT	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	101, 207
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	3 cut(s)	169, 206, 234
BstKTI	GATC	2 cut(s)	75, 79
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	2 cut(s)	72, 76
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 229
BstNSI	RCATGY	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	21
BstUI	CGCG	1 cut(s)	234
BstV2I	GAAGAC	2 cut(s)	29, 54
Bsu15I	ATCGAT	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	3 cut(s)	169, 206, 234
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	2 cut(s)	13, 241
CviJI	RGCY	4 cut(s)	65, 82, 256, 269
CviKI_1	RGCY	4 cut(s)	65, 82, 256, 269
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	101, 207
DpnI	GATC	2 cut(s)	74, 78
DpnII	GATC	2 cut(s)	72, 76
EaeI	YGGCCR	1 cut(s)	63
Eco47III	AGCGCT	1 cut(s)	168
FaeI	CATG	2 cut(s)	16, 244
FaiI	YATR	3 cut(s)	14, 111, 242
FatI	CATG	2 cut(s)	12, 240
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	1 cut(s)	118
GlaI	GCGC	3 cut(s)	168, 205, 233
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	169, 206, 234
Hin1II	CATG	2 cut(s)	16, 244
Hin6I	GCGC	3 cut(s)	167, 204, 232
HinP1I	GCGC	3 cut(s)	167, 204, 232
HinfI	GANTC	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	4 cut(s)	41, 85, 92, 278
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	23, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 229
HpyF3I	CTNAG	2 cut(s)	101, 207
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	16, 244
HspAI	GCGC	3 cut(s)	167, 204, 232
Kzo9I	GATC	2 cut(s)	72, 76
LmnI	GCTCC	2 cut(s)	87, 266
LpnPI	CCDG	2 cut(s)	98, 255
LweI	GCATC	1 cut(s)	219
MaeII	ACGT	1 cut(s)	188
MalI	GATC	2 cut(s)	74, 78
MboI	GATC	2 cut(s)	72, 76
MboII	GAAGA	3 cut(s)	29, 56, 59
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	65
MnlI	CCTC	6 cut(s)	25, 96, 120, 175, 227, 237
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	65
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	175, 229
NdeII	GATC	2 cut(s)	72, 76
NlaIII	CATG	2 cut(s)	16, 244
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	72, 76
SetI	ASST	9 cut(s)	71, 84, 131, 155, 191, 203, 248, 258, 271
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	218, 276
SmoI	CTYRAG	2 cut(s)	218, 276
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	3 cut(s)	75, 91, 227
TasI	AATT	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	105
XceI	RCATGY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.