Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018367.1

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Reverse (-)

3491 .. 3843

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018367.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgaagtacgagcggttttccgctctactggcacagcacctccaaaaacacaccgaaaagtcggggttgatagctagtttaaggatgtacaactcacttgtcgagagatgcttcaatgattgtgttgacactttcaagcacaaatcactgcagaagcaagaggaaacctgtgttcggcgatgtgctgagaagtttctcaagcattcgatgcgcgttggcatgaggtttgcagagcttaaccagggagctgcaacccaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

87

Amino Acids

10.17

Weight (kDa)

9.24

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	13, 23
AccII	CGCG	1 cut(s)	213
AciI	CCGC	2 cut(s)	13, 21
AfaI	GTAC	2 cut(s)	8, 89
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	115, 136
AjnI	CCWGG	2 cut(s)	240, 255
AluBI	AGCT	3 cut(s)	74, 235, 248
AluI	AGCT	3 cut(s)	74, 235, 248
ApeKI	GCWGC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	242, 257
BfaI	CTAG	2 cut(s)	75, 262
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	242, 257
BmrFI	CCNGG	2 cut(s)	242, 257
BmsI	GCATC	2 cut(s)	98, 198
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	241, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	242, 257
BseDI	CCNNGG	2 cut(s)	241, 255
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	202
Bsp1407I	TGTACA	1 cut(s)	87
BspACI	CCGC	2 cut(s)	13, 21
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	153
BsrBI	CCGCTC	2 cut(s)	13, 23
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	241, 255
Bst2UI	CCWGG	2 cut(s)	242, 257
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 208
BstNI	CCWGG	2 cut(s)	242, 257
BstSCI	CCNGG	2 cut(s)	240, 255
BstSFI	CTRYAG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	235
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
CfoI	GCGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	7, 88
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	3 cut(s)	74, 235, 248
CviKI_1	RGCY	3 cut(s)	74, 235, 248
CviQI	GTAC	2 cut(s)	7, 88
DdeI	CTNAG	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	240, 255
FaeI	CATG	1 cut(s)	223
FaiI	YATR	1 cut(s)	221
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	75, 262
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4V	TGCA	3 cut(s)	151, 230, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 208
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	5 cut(s)	14, 181, 227, 242, 254
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	2 cut(s)	98, 198
MaeI	CTAG	2 cut(s)	75, 262
MbiI	CCGCTC	2 cut(s)	13, 23
MnlI	CCTC	3 cut(s)	50, 154, 216
MseI	TTAA	2 cut(s)	80, 237
MspR9I	CCNGG	2 cut(s)	242, 257
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	242, 257
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	29, 208
NlaIII	CATG	1 cut(s)	223
PctI	GAATGC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	240, 255
PspGI	CCWGG	2 cut(s)	240, 255
PstI	CTGCAG	1 cut(s)	153
RsaI	GTAC	2 cut(s)	8, 89
RsaNI	GTAC	2 cut(s)	7, 88
SaqAI	TTAA	2 cut(s)	80, 237
SatI	GCNGC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	242, 257
SetI	ASST	6 cut(s)	42, 76, 170, 227, 237, 250
SfaNI	GCATC	2 cut(s)	98, 198
SfcI	CTRYAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	2 cut(s)	13, 21
SspMI	CTAG	2 cut(s)	75, 262
StyD4I	CCNGG	2 cut(s)	240, 255
TaqI	TCGA	2 cut(s)	102, 206
TatI	WGTACW	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	80, 237
Tru9I	TTAA	2 cut(s)	80, 237
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	153
XspI	CTAG	2 cut(s)	75, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.