Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

24817155 .. 24818527

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G255300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGACAAAGGCATGCTGGCAGCGGACTTGGAGGGTCTTCCTGAAGAAGATAAGCATAGAATGGCCACCTTGATCGACCAGCTTCAGATTCGTGACAGCCTGAGGATGTATAATTCATTGGTGGAGAGATGCTTTACTGACTGTGTAGACACCTTTCAGCGCAAAGCCCTGACCAAGCAAGAGGATTCTTGTGTTCGTAGGTGCGCCGAAAAGTTCCTTAAGCATTCGATGCGCGTTGGCATGAGATTTGCAGAGCTTAACCAAGGAGCAGCAACTCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

95

Amino Acids

10.86

Weight (kDa)

6.1

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	2 cut(s)	63, 68
AflII	CTTAAG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	82, 256
AluI	AGCT	2 cut(s)	82, 256
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	20, 269
AspLEI	GCGC	3 cut(s)	162, 206, 234
AxyI	CCTNAGG	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	32, 281
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	2 cut(s)	21, 270
BlsI	GCNGC	2 cut(s)	22, 271
BmsI	GCATC	2 cut(s)	119, 219
BpiI	GAAGAC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	32, 281
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	234
BspTI	CTTAAG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	14, 18
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	3 cut(s)	162, 206, 234
BstKTI	GATC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	16
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	32, 281
BstV2I	GAAGAC	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	14, 18
CfoI	GCGC	3 cut(s)	162, 206, 234
CviAII	CATG	2 cut(s)	13, 241
CviJI	RGCY	5 cut(s)	65, 82, 99, 167, 256
CviKI_1	RGCY	5 cut(s)	65, 82, 99, 167, 256
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	63, 68
Eco81I	CCTNAGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	16, 244
FaiI	YATR	4 cut(s)	14, 57, 111, 242
FatI	CATG	2 cut(s)	12, 240
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	21, 270
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	21, 270
GlaI	GCGC	3 cut(s)	161, 205, 233
GluI	GCNGC	2 cut(s)	21, 270
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	162, 206, 234
Hin1II	CATG	2 cut(s)	16, 244
Hin6I	GCGC	3 cut(s)	160, 204, 232
HinP1I	GCGC	3 cut(s)	160, 204, 232
HinfI	GANTC	2 cut(s)	88, 185
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	41, 92, 278
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	16, 244
HspAI	GCGC	3 cut(s)	160, 204, 232
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	5 cut(s)	2, 54, 92, 113, 182
Lsp1109I	GCAGC	2 cut(s)	32, 281
LweI	GCATC	2 cut(s)	119, 219
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	29, 56, 59
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	65
MnlI	CCTC	3 cut(s)	25, 96, 175
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	3 cut(s)	219, 258, 283
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	223
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	16, 244
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	88, 185
PkrI	GCNGC	2 cut(s)	22, 271
SaqAI	TTAA	3 cut(s)	219, 258, 283
SatI	GCNGC	2 cut(s)	21, 270
Sau3AI	GATC	1 cut(s)	72
SetI	ASST	5 cut(s)	71, 84, 155, 203, 258
SfaNI	GCATC	2 cut(s)	119, 219
SmlI	CTYRAG	2 cut(s)	218, 276
SmoI	CTYRAG	2 cut(s)	218, 276
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	75, 227
TasI	AATT	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	88, 185
Tru1I	TTAA	3 cut(s)	219, 258, 283
Tru9I	TTAA	3 cut(s)	219, 258, 283
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	2 cut(s)	20, 269
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	105
Vha464I	CTTAAG	1 cut(s)	218
XceI	RCATGY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.