Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Reverse (-)

9529353 .. 9531875

Gene Structure 2523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1108200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGACAAGAGCATGATAGGAGATCTGGATTCGCTTCCAGAGGAAGATAAGATGAGAATGGCCACCATGATCGACCAGCTCCAGATCCGCGACAGTTTGAGAATGTATAACTCACTTGTTGAGAGATGCTTCAATGATTGTGTCGACACCTTTAAGCACAAATCGCTGCAGAAGCAAGAGGAAACCTGTGTCAGGCGATGTGCTGAGAAGTTCCTAAAGCATTCCATGCGTGTTGGAATGAGGTTTGCAGAGCTCAACCAGGGAGCTGCAACACAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

94

Amino Acids

10.9

Weight (kDa)

6.1

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	23 - 84	5.7e-22	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	90
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	79, 253, 266
AluI	AGCT	3 cut(s)	79, 253, 266
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	166, 266
BalI	TGGCCA	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	153, 253
BciT130I	CCWGG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	167
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	2 cut(s)	167, 267
BlsI	GCNGC	2 cut(s)	168, 268
Bme1390I	CCNGG	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	153, 253
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	22, 69, 84
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	171
BspPI	GGATC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	22, 69, 84
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	25, 72, 87
BstMBI	GATC	3 cut(s)	22, 69, 84
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 172, 226
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	167
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	153, 253
BstX2I	RGATCY	2 cut(s)	22, 84
BstYI	RGATCY	2 cut(s)	22, 84
BsuRI	GGCC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	211
CviAII	CATG	3 cut(s)	13, 67, 226
CviJI	RGCY	4 cut(s)	62, 79, 253, 266
CviKI_1	RGCY	4 cut(s)	62, 79, 253, 266
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	3 cut(s)	24, 71, 86
DpnII	GATC	3 cut(s)	22, 69, 84
EaeI	YGGCCR	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	3 cut(s)	16, 70, 229
FaiI	YATR	4 cut(s)	14, 68, 108, 227
FatI	CATG	3 cut(s)	12, 66, 225
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	167, 267
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	167, 267
GluI	GCNGC	2 cut(s)	167, 267
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	16, 70, 229
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	3 cut(s)	26, 38, 82
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	169, 248, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 172, 226
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	16, 70, 229
Kzo9I	GATC	3 cut(s)	22, 69, 84
LmnI	GCTCC	2 cut(s)	84, 263
LpnPI	CCDG	8 cut(s)	11, 51, 89, 95, 178, 199, 245, 272
Lsp1109I	GCAGC	2 cut(s)	153, 253
LweI	GCATC	1 cut(s)	116
MalI	GATC	3 cut(s)	24, 71, 86
MboI	GATC	3 cut(s)	22, 69, 84
MboII	GAAGA	1 cut(s)	56
MflI	RGATCY	2 cut(s)	22, 84
MhlI	GDGCHC	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	3 cut(s)	34, 172, 234
Mox20I	TGGCCA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	163, 172, 226
NdeII	GATC	3 cut(s)	22, 69, 84
NlaIII	CATG	3 cut(s)	16, 70, 229
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	168, 268
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	171
PsuI	RGATCY	2 cut(s)	22, 84
SacI	GAGCTC	1 cut(s)	255
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	167, 267
Sau3AI	GATC	3 cut(s)	22, 69, 84
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	6 cut(s)	81, 152, 188, 245, 255, 268
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	167
SsiI	CCGC	1 cut(s)	88
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	72, 144
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	2 cut(s)	166, 266
XagI	CCTNNNNNAGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.