Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004484

Physical Location & Seq

Genomic Coordinates Forward (+)

17138476 .. 17139582

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGACGCAAGCATGATGGCTGGACTTGATGGTCTTCCTGAAGAAGACAAAGCCAAAATGGCCTCCATGATCGATCAGCTTCAGCTCCGTGATAGTTTGAGGATGTACAATTCATTGGTGGAGAGGTGTTTCGTGGACTGTGTTGATAGCTTCACACGCAAATCTCTGCAGAAACAAGAGGAGACTTGTGTGATGCGTTGCGCTGAGAAGTTCCTTAAGCATACGATGCGTGTTGGTATGCGGTTTGCTGAGCTCAATCAGAACGCACCAACCCAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0008104 GO:0008150 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042719 GO:0042721 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045039 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072321 GO:0072594 GO:0072655 GO:0072657 GO:0090150 GO:0090151 GO:0098796 GO:0098798 GO:0098800 GO:1990351 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Tim10_DDP

Protein Analysis

93

Amino Acids

10.72

Weight (kDa)

5.38

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	23 - 84	5.8e-21	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46560
fragaria_vesca	FvH4_3g36110 FvH4_6g13690
malus_domestica	MD03G1093400.v1.1 MD04G1129100.v1.1 MD11G1108200.v1.1 MD12G1141800.v1.1
prunus_persica	Prupe.6G077400_v2.0.a1 Prupe.6G255300_v2.0.a1
pyrus_communis	pycom03g07500 pycom04g11730 pycom11g08940 pycom12g13650
rosa_chinensis	RchiOBHm_Chr3g0466561 RchiOBHm_Chr5g0064531
rosa_multiflora	Rmu_sc0003352.1_g000004 Rmu_sc0018367.1_g000003 Rmu_sc0020778.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016490 Rroxscaffold_6G00414370
rosa_rugosa	Rorug03G0082700 Rorug05G0365900
rosa_samantha	Rh3AG129600 Rh3BG151000 Rh3CG150700 Rh3DG151600 Rh5AG423900 Rh5BG439300 Rh5CG461900 Rh5DG452600
rosa_wichuraiana	Rw3G012250 Rw5G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	30
AciI	CCGC	1 cut(s)	241
AcuI	CTGAAG	2 cut(s)	60, 65
AfaI	GTAC	1 cut(s)	107
AflII	CTTAAG	1 cut(s)	215
AluBI	AGCT	4 cut(s)	79, 85, 150, 253
AluI	AGCT	4 cut(s)	79, 85, 150, 253
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	2 cut(s)	26, 51
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	2 cut(s)	10, 23
BcoDI	GTCTC	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	167
BfrI	CTTAAG	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	249
BmsI	GCATC	2 cut(s)	183, 216
BpiI	GAAGAC	2 cut(s)	26, 51
Bpu1102I	GCTNAGC	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	72
BseGI	GGATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	195, 240
BseRI	GAGGAG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	69, 73
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	196, 241
BspDI	ATCGAT	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	171
BspTI	CTTAAG	1 cut(s)	215
BsrGI	TGTACA	1 cut(s)	105
BssMI	GATC	2 cut(s)	69, 73
Bst4CI	ACNGT	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	204, 249
BstF5I	GGATG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	72, 76
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	69, 73
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 156, 226
BstSFI	CTRYAG	1 cut(s)	167
BstV2I	GAAGAC	2 cut(s)	26, 51
Bsu15I	ATCGAT	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	62
BsuTUI	ATCGAT	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	13, 67
CviJI	RGCY	7 cut(s)	20, 53, 62, 79, 85, 150, 253
CviKI_1	RGCY	7 cut(s)	20, 53, 62, 79, 85, 150, 253
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	204, 249
DpnI	GATC	2 cut(s)	71, 75
DpnII	GATC	2 cut(s)	69, 73
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	60, 65
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	2 cut(s)	16, 70
FaiI	YATR	4 cut(s)	14, 68, 222, 239
FatI	CATG	2 cut(s)	12, 66
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	255
GlaI	GCGC	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	62
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	16, 70
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 156, 226
HpyF3I	CTNAG	2 cut(s)	204, 249
Hsp92II	CATG	2 cut(s)	16, 70
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	69, 73
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	2 cut(s)	6, 51
LweI	GCATC	2 cut(s)	183, 216
MalI	GATC	2 cut(s)	71, 75
MboI	GATC	2 cut(s)	69, 73
MboII	GAAGA	3 cut(s)	26, 53, 56
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	109
MnlI	CCTC	4 cut(s)	73, 93, 117, 172
MseI	TTAA	1 cut(s)	216
MspCI	CTTAAG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	59, 156, 226
NdeII	GATC	2 cut(s)	69, 73
NlaIII	CATG	2 cut(s)	16, 70
Psp124BI	GAGCTC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	69, 73
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	5 cut(s)	81, 87, 128, 152, 255
SfaNI	GCATC	2 cut(s)	183, 216
SfcI	CTRYAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	1 cut(s)	241
SstI	GAGCTC	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	109
TatI	WGTACW	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	77
Vha464I	CTTAAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.