Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018367.1

Orthogroup ID

OG0016293

Physical Location & Seq

Genomic Coordinates Forward (+)

16798 .. 17355

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018367.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgccaaacccgcgagcatttgcatctggcattgctcacggaggtaggttctttgtggttggtggtggtagcaatgcagccctgaagcactcagctgaaatctacaaccccagcaacaactcttgggggtctttgaaatcatttgttccccaagaggcagacggatttactgctacatcactcaatgggcgtttaatgatattgacttggtcagatcggttaggcgtgaagctgtggctgtatactgtgatcacccatccaattttaatatataactgcaggcgaattggtttcttgccgaaccaaatagttgagaggccaagactaaaagcacatggcgcaagaatggttccggttggggggaaggaggtgtgggttttggtgggagagaatgagaggatattccaagttgatgggtcaagtgcttggcctgtcttcccagccccaatgtataaacctagtgaaggacatgaagttgtgagcaagggtcatatctatgccttttctttccatgggtttagaataagttggagacaaatccctgtttactcaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1

Protein Analysis

185

Amino Acids

20.59

Weight (kDa)

9.93

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36100
prunus_persica	Prupe.6G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0064521
rosa_laevigata	RLG00000035731
rosa_multiflora	Rmu_sc0003352.1_g000003 Rmu_sc0018367.1_g000005 Rmu_sc0021484.1_g000003 Rmu_ssc0000127.1_g000048
rosa_roxburghii	Rroxscaffold_1G00016500
rosa_rugosa	Rorug05G0365900
rosa_samantha	Rh5AG423800 Rh5BG439200 Rh5CG461800 Rh5DG452500
rosa_wichuraiana	Rw5G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	1 cut(s)	13
AciI	CCGC	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	359, 464
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	2 cut(s)	95, 232
AluI	AGCT	2 cut(s)	95, 232
Alw26I	GTCTC	1 cut(s)	526
AoxI	GGCC	2 cut(s)	317, 428
ApeKI	GCWGC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	2 cut(s)	264, 407
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	351
BmsI	GCATC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 464
Bse3DI	GCAATG	2 cut(s)	30, 79
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	359, 464
BseMI	GCAATG	2 cut(s)	30, 79
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	89
BseYI	CCCAGC	2 cut(s)	110, 439
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	2 cut(s)	319, 430
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	359, 464
BsmAI	GTCTC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	319, 430
Bsp143I	GATC	2 cut(s)	214, 249
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	319, 430
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	30, 79
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	2 cut(s)	214, 249
BssNAI	GTATAC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	511
Bst1107I	GTATAC	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	15, 281
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	511
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	2 cut(s)	217, 252
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	2 cut(s)	214, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 338
BstSFI	CTRYAG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstZ17I	GTATAC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	319, 430
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	15, 281
CfoI	GCGC	1 cut(s)	341
CviAII	CATG	3 cut(s)	335, 470, 512
CviJI	RGCY	7 cut(s)	80, 95, 232, 238, 319, 430, 443
CviKI_1	RGCY	7 cut(s)	80, 95, 232, 238, 319, 430, 443
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	216, 251
DpnII	GATC	2 cut(s)	214, 249
Eco130I	CCWWGG	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	3 cut(s)	338, 473, 515
FaiI	YATR	9 cut(s)	243, 271, 273, 336, 453, 471, 492, 498, 513
FatI	CATG	3 cut(s)	334, 469, 511
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	1 cut(s)	78
GsaI	CCCAGC	2 cut(s)	114, 443
HaeIII	GGCC	2 cut(s)	319, 430
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	338, 473, 515
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	243, 547
Hpy188I	TCNGA	2 cut(s)	214, 557
Hpy8I	GTNNAC	2 cut(s)	243, 547
HpyAV	CCTTC	2 cut(s)	358, 458
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	23, 77, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 338
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	338, 473, 515
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	214, 249
LpnPI	CCDG	7 cut(s)	12, 95, 124, 265, 366, 444, 453
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	459
MalI	GATC	2 cut(s)	216, 251
MboI	GATC	2 cut(s)	214, 249
MboII	GAAGA	1 cut(s)	427
MluCI	AATT	2 cut(s)	261, 285
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	5 cut(s)	35, 148, 309, 361, 390
MseI	TTAA	2 cut(s)	194, 266
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	10, 338
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	2 cut(s)	214, 249
NlaIII	CATG	3 cut(s)	338, 473, 515
NlaIV	GGNNCC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	79
PspFI	CCCAGC	2 cut(s)	110, 439
PspN4I	GGNNCC	1 cut(s)	351
PstI	CTGCAG	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	194, 266
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	214, 249
SetI	ASST	6 cut(s)	46, 50, 97, 234, 372, 460
SfaNI	GCATC	1 cut(s)	32
SfcI	CTRYAG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	2 cut(s)	261, 285
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	247
TasI	AATT	2 cut(s)	261, 285
Tru1I	TTAA	2 cut(s)	194, 266
Tru9I	TTAA	2 cut(s)	194, 266
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	2 cut(s)	54, 177
Tth111I	GACNNNGTC	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.