RLG00000035731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016293
Physical Location & Seq
Reverse (-)
70960635 .. 70962463
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035731

Sequence Viewer

Length: 1134 bp
ATGTGGTATCTTAGTAGAACACCTTCAAACCGCAAACCAAATGATGACTCCAGCTTCAATTTGCGCAATTCCATCTTCACCGTCTCCGATTCCGGTTATTTCCAAGACATTTGCATGATTGAGGTGCCAAACAAATCCGTGGTCGATCAGGAAGAACCCAACAAAGAAGAAGAGGCTTGCCCATTTTCATTCTCATTCCCAAAATGGGAATGGTTTGCCTATCTCTGCTCTCCCACCCAATTCCATTCCGTGGCGGTGCCTCGAAACTCTTCCATGTTTAGAGTACAGGTGATTGGGATTCTGCCTCAACATTTCTTGTGTGCCAAGTTGGTGCGAGGTCCGAAACCTTATGTCACTCTGTGCACTTTCTCATGCAGTGAGAATTCTCTCAATGATGTGCCCAAAATGAACTGTGCGGATCGCAATCTGTTCGGAGCTGCATGTGCTATTCTTGATGGGTGGCTTTATGTTGCTGGAGGGTATAAGGATAACTCTTTAGACACTTTCCATTCATCTCACTTGAACTCGGCGGAACGATTGAATCTGAAAACATGGCAGTGGGAAGCACTGCAGAATATGCCAAGCCCGCGAGCATTTGCATCTGGCATTGCTCACGGAGGCAGGTTCTTTGTGGTTGGTGGTGGTAGCAATGCAGCCCTGAAGCACTCAGCTGAAATCTACAACCCCAGCAACAACTCTTGGGGGTCTTTGAAATCATTTGTTCCCCAAGAGGCAGACGGATTCACTGCTACGTCACTCAATGGGCGTTTAATGATATTGACTTGGTCAGATCGGTTAGGCGTGAAGCTGTGGCTGTATACTGTGATCACCCGTCCAATTTTAATATATAACTACAGGCGAATTGGTTTCTTGCCTAACCAAATAGTTGAGAGGCCAAGACTAAAAGCACATGGCGCAAGAATGGTTCCGGTTGGGGGGAAGGAGGTGTGGGTTTTGGTGGGAGAGAATGAGAGGATATTCCAAGTTGATGGGTCAAGTGCTTGGCCTGTGTTCCCAGCCCCAATGTATAAGCCTAGTGAAGGACATGAAGTTGTGAGCAAGGGTCATATTTATGCCTTTTCTTTCCACGGGGTTAGAATAAGTTGGCGACAAATCCCTGTTTACTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kelch_1

Protein Analysis

378

Amino Acids

42.51

Weight (kDa)

8.82

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 120 - 259 8.9e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 126 - 237 4.3e-06 Calicin, beta-propeller domain
Kelch_1 PF01344 145 - 194 5.3e-08 Kelch motif
Beta-prop_FBX42 PF13415 146 - 321 2.4e-08 FBX42, beta-propeller domain
Kelch_1 PF01344 196 - 234 3.7e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 612
AccB1I GGYRCC 2 cut(s) 124, 256
AccB7I CCANNNNNTGG 1 cut(s) 250
AccI GTMKAC 1 cut(s) 818
AccII CGCG 1 cut(s) 589
AciI CCGC 5 cut(s) 31, 254, 416, 530, 587
AclWI GGATC 1 cut(s) 426
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 680
AdeI CACNNNGTG 1 cut(s) 360
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 4 cut(s) 205, 250, 935, 1040
AgsI TTSAA 5 cut(s) 27, 58, 523, 541, 712
AluBI AGCT 4 cut(s) 54, 437, 671, 808
AluI AGCT 4 cut(s) 54, 437, 671, 808
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 361
AlwI GGATC 1 cut(s) 426
AoxI GGCC 2 cut(s) 893, 1004
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 2 cut(s) 437, 653
ApoI RAATTY 1 cut(s) 382
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
Asp700I GAANNNNTTC 2 cut(s) 22, 268
AspLEI GCGC 2 cut(s) 66, 917
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 3 cut(s) 70, 301, 820
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 2 cut(s) 365, 402
BanI GGYRCC 2 cut(s) 124, 256
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 424, 665
BccI CCATC 3 cut(s) 80, 449, 983
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BclI TGATCA 1 cut(s) 825
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 1035
BfmI CTRYAG 2 cut(s) 569, 853
BfuAI ACCTGC 1 cut(s) 612
BisI GCNGC 2 cut(s) 438, 654
BlsI GCNGC 2 cut(s) 439, 655
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 3 cut(s) 126, 258, 927
BmsI GCATC 1 cut(s) 608
BpmI CTGGAG 2 cut(s) 34, 495
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 138, 249, 1087
BsaWI WCCGGW 2 cut(s) 92, 928
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 250, 935, 1040
Bse3DI GCAATG 2 cut(s) 606, 655
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 138, 249, 1087
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 4 cut(s) 205, 250, 935, 1040
BseMI GCAATG 2 cut(s) 606, 655
BseMII CTCAG 1 cut(s) 681
BseSI GKGCMC 2 cut(s) 365, 402
BseXI GCAGC 2 cut(s) 424, 665
BseYI CCCAGC 2 cut(s) 686, 1015
Bsh1236I CGCG 1 cut(s) 589
BshFI GGCC 2 cut(s) 895, 1006
BshNI GGYRCC 2 cut(s) 124, 256
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 2 cut(s) 93, 929
BslI CCNNNNNNNGG 4 cut(s) 205, 250, 935, 1040
BsmAI GTCTC 1 cut(s) 88
BsmBI CGTCTC 1 cut(s) 88
BsnI GGCC 2 cut(s) 895, 1006
Bsp1286I GDGCHC 2 cut(s) 365, 402
Bsp143I GATC 4 cut(s) 145, 418, 790, 825
BspACI CCGC 5 cut(s) 31, 254, 416, 530, 587
BspANI GGCC 2 cut(s) 895, 1006
BspCNI CTCAG 1 cut(s) 680
BspFNI CGCG 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 126, 258, 927
BspMAI CTGCAG 1 cut(s) 573
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 1 cut(s) 426
BspT107I GGYRCC 2 cut(s) 124, 256
BsrDI GCAATG 2 cut(s) 606, 655
BssECI CCNNGG 3 cut(s) 138, 249, 1087
BssMI GATC 4 cut(s) 145, 418, 790, 825
BssNAI GTATAC 1 cut(s) 819
Bst1107I GTATAC 1 cut(s) 819
Bst4CI ACNGT 3 cut(s) 82, 413, 823
Bst6I CTCTTC 2 cut(s) 165, 274
BstAPI GCANNNNNTGC 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 178, 587, 591
BstDEI CTNAG 3 cut(s) 11, 667, 1126
BstDSI CCRYGG 3 cut(s) 138, 249, 1087
BstENI CCTNNNNNAGG 1 cut(s) 1038
BstFNI CGCG 1 cut(s) 589
BstHHI GCGC 2 cut(s) 66, 917
BstKTI GATC 4 cut(s) 148, 421, 793, 828
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 4 cut(s) 145, 418, 790, 825
BstMWI GCNNNNNNNGC 4 cut(s) 443, 577, 586, 914
BstNSI RCATGY 1 cut(s) 444
BstSFI CTRYAG 2 cut(s) 569, 853
BstSLI GKGCMC 2 cut(s) 365, 402
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 2 cut(s) 424, 665
BstXI CCANNNNNNTGG 1 cut(s) 989
BstZ17I GTATAC 1 cut(s) 819
BsuRI GGCC 2 cut(s) 895, 1006
BtgI CCRYGG 3 cut(s) 138, 249, 1087
BtsI GCAGTG 4 cut(s) 382, 563, 566, 744
BtsIMutI CAGTG 4 cut(s) 382, 563, 566, 744
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 3 cut(s) 178, 587, 591
CfoI GCGC 2 cut(s) 66, 917
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 284
CviAII CATG 7 cut(s) 115, 274, 372, 441, 552, 911, 1046
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 3 cut(s) 11, 667, 1126
DpnI GATC 4 cut(s) 147, 420, 792, 827
DpnII GATC 4 cut(s) 145, 418, 790, 825
DraIII CACNNNGTG 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 165, 274
EarI CTCTTC 2 cut(s) 165, 274
EciI GGCGGA 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 7 cut(s) 118, 277, 375, 444, 555, 914, 1049
FatI CATG 7 cut(s) 114, 273, 371, 440, 551, 910, 1045
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 825
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 2 cut(s) 438, 654
Fsp4HI GCNGC 2 cut(s) 438, 654
FspBI CTAG 1 cut(s) 1035
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 2 cut(s) 65, 916
GluI GCNGC 2 cut(s) 438, 654
GsaI CCCAGC 2 cut(s) 690, 1019
GsuI CTGGAG 2 cut(s) 34, 495
HaeIII GGCC 2 cut(s) 895, 1006
HapII CCGG 2 cut(s) 93, 929
HhaI GCGC 2 cut(s) 66, 917
Hin1II CATG 7 cut(s) 118, 277, 375, 444, 555, 914, 1049
Hin6I GCGC 2 cut(s) 64, 915
HinP1I GCGC 2 cut(s) 64, 915
HinfI GANTC 5 cut(s) 47, 89, 298, 541, 741
HpaII CCGG 2 cut(s) 93, 929
HphI GGTGA 3 cut(s) 70, 301, 820
Hpy166II GTNNAC 3 cut(s) 363, 819, 1123
Hpy188I TCNGA 5 cut(s) 88, 342, 434, 546, 790
Hpy188III TCNNGA 2 cut(s) 149, 452
Hpy8I GTNNAC 3 cut(s) 363, 819, 1123
HpyAV CCTTC 3 cut(s) 33, 934, 1034
HpyCH4III ACNGT 3 cut(s) 82, 413, 823
HpyCH4IV ACGT 1 cut(s) 752
HpyCH4V TGCA 7 cut(s) 114, 363, 375, 440, 571, 599, 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 577, 586, 914
HpyF3I CTNAG 3 cut(s) 11, 667, 1126
HpySE526I ACGT 1 cut(s) 752
Hsp92II CATG 7 cut(s) 118, 277, 375, 444, 555, 914, 1049
HspAI GCGC 2 cut(s) 64, 915
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 4 cut(s) 145, 418, 790, 825
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 2 cut(s) 424, 665
LweI GCATC 1 cut(s) 608
MaeI CTAG 1 cut(s) 1035
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 2 cut(s) 352, 753
MalI GATC 4 cut(s) 147, 420, 792, 827
MboI GATC 4 cut(s) 145, 418, 790, 825
MboII GAAGA 5 cut(s) 67, 164, 179, 182, 261
MhlI GDGCHC 2 cut(s) 365, 402
MluCI AATT 6 cut(s) 58, 67, 239, 382, 837, 861
MlyI GAGTC 1 cut(s) 41
MroXI GAANNNNTTC 2 cut(s) 22, 268
MseI TTAA 2 cut(s) 770, 842
MslI CAYNNNNRTG 3 cut(s) 113, 556, 1071
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 2 cut(s) 93, 929
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 4 cut(s) 443, 577, 586, 914
NdeII GATC 4 cut(s) 145, 418, 790, 825
NlaIII CATG 7 cut(s) 118, 277, 375, 444, 555, 914, 1049
NlaIV GGNNCC 3 cut(s) 126, 258, 927
NmeAIII GCCGAG 1 cut(s) 506
NmuCI GTSAC 2 cut(s) 352, 753
NsbI TGCGCA 1 cut(s) 65
NspI RCATGY 1 cut(s) 444
PdmI GAANNNNTTC 2 cut(s) 22, 268
PfeI GAWTC 4 cut(s) 89, 298, 541, 741
PflFI GACNNNGTC 1 cut(s) 784
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 2 cut(s) 439, 655
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspFI CCCAGC 2 cut(s) 686, 1015
PspN4I GGNNCC 3 cut(s) 126, 258, 927
PspPI GGNCC 1 cut(s) 338
PstI CTGCAG 1 cut(s) 573
PsyI GACNNNGTC 1 cut(s) 784
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 3 cut(s) 113, 556, 1071
SaqAI TTAA 2 cut(s) 770, 842
SatI GCNGC 2 cut(s) 438, 654
Sau3AI GATC 4 cut(s) 145, 418, 790, 825
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 2 cut(s) 365, 402
SfaNI GCATC 1 cut(s) 608
SfcI CTRYAG 2 cut(s) 569, 853
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 3 cut(s) 113, 556, 1071
Sse9I AATT 6 cut(s) 58, 67, 239, 382, 837, 861
SsiI CCGC 5 cut(s) 31, 254, 416, 530, 587
SspMI CTAG 1 cut(s) 1035
TaaI ACNGT 3 cut(s) 82, 413, 823
TaiI ACGT 1 cut(s) 755
TaqI TCGA 2 cut(s) 144, 262
TasI AATT 6 cut(s) 58, 67, 239, 382, 837, 861
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 4 cut(s) 89, 298, 541, 741
Tru1I TTAA 2 cut(s) 770, 842
Tru9I TTAA 2 cut(s) 770, 842
TscAI CASTG 4 cut(s) 382, 563, 573, 751
TseFI GTSAC 2 cut(s) 352, 753
TseI GCWGC 2 cut(s) 437, 653
Tsp45I GTSAC 2 cut(s) 352, 753
TspDTI ATGAA 4 cut(s) 177, 422, 501, 1062
TspGWI ACGGA 4 cut(s) 127, 238, 630, 753
TspRI CASTG 4 cut(s) 382, 563, 573, 751
Tth111I GACNNNGTC 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 338
XagI CCTNNNNNAGG 1 cut(s) 1038
XapI RAATTY 1 cut(s) 382
XceI RCATGY 1 cut(s) 444
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 818
XmnI GAANNNNTTC 2 cut(s) 22, 268
XspI CTAG 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.