Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008422

Physical Location & Seq

Genomic Coordinates Reverse (-)

32813836 .. 32816456

Gene Structure 2621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAATCCACTAACCCAGGTGAAGAATTTACAGAAGATAAACGCAACAGAAGCTCGATTAGGGATTTCAGAGGACGCTTCATGGCACGCCACGTTCAAACACTCCGCCTACGTCTACGCCGGCGGCCTCCCCTTCGATCTCACCGAAGGCGACCTCGTCGCCGTCTTCGCTCAGTACGGTGAGGTCGTCGATGTGAACCTCGTCCGCGATAAAGGCACCGGAAAATCGAAAGGGTTTGCTTTTGTGGCGTATGAGGATCAGAGGAGCACGAATCTGGCTGTGGATAATTTGAACGGAGCCCAAGTGGTGGGTCGGACTATTAGGGTTGATCATGTGCCCAAGTACAAGAAGATGGAGGAGGAAGACGAGGAGGAGGCTCAGAGGAAGAGGGAGGAGCGCGGCGTCTGCCGTGCTTTCCAGAGAGGTGAATGTACTCGTGGCGCTGCGTGTCGGTTTTCTCACAATGAACAGAGAGCTGCAAACACGGGTTGGGGTGCTGAGGACAAAAAATGGGGACATGACAACTATGATGGTCCGAGAAAGAGTGACAAAAGATCTGGAACCATCCCCTCGAATCGTGTTCCAGAGCCTAGAGCGCGAGAAGATTTGAGCACTAGAGATAAATTCAGGACAGCACCGGACAGGAGGAGCTTGGATGAAGAAAAGAAGACATCAAGAAGACGTGGTGAGGATAATGAGTTGGAGCCAAGATCAAGAGAAGATTATGACAGGAGGGAAGAAAAGAGACCAAGAAGACATGATGAGTATGAGAAGGGAAGAGAATATCATGATAGAAGGGAAGATAGGAGACCCAGAAGGCAAGGCGATGATGAATTTGAACCAAAGTCAAAGTCTGGAGAAGATAAGAGACCCAGAGGGCAAGGTGCTGATGCTGCATTTGAAAGTAAGTCTAGAGAAGACCATGTCAGAAGAAATTATGATAGAAGGAAGGATAGTAGACCAAGAAGACGTGATGATGATGTGGAAGCTTATGACAGAAAAGAAGATCGTGATCGGATGGAAGAAAAGAGATCAAGGCAACCCAATAATGATGAATTAGAGCCAAAGTCACGAGCACGTCGGGATAGAAGGGAAGGAGAGAGATCAAAAAGGCATCATTATGATGAAGTTCCTCCAAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070274 GO:0070727 GO:0071011 GO:0071013 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

382

Amino Acids

44.83

Weight (kDa)

9.16

Isoelectric Point (pI)

70.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	35 - 96	8.1e-06	RNA recognition motif
RRM_1	PF00076	38 - 108	2.6e-20	RNA recognition motif
zf-CCCH	PF00642	134 - 155	2.5e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47120 AT3G47120 AT5G58790
fragaria_vesca	FvH4_3g38440
malus_domestica	MD03G1072000.v1.1 MD11G1076000.v1.1
prunus_persica	Prupe.6G058600_v2.0.a1 Prupe.6G058600_v2.0.a1
pyrus_communis	pycom03g05820 pycom11g06370
rosa_chinensis	RchiOBHm_Chr5g0069091
rosa_laevigata	RLG00000036037
rosa_multiflora	Rmu_sc0000853.1_g000035 Rmu_sc0000936.1_g000010
rosa_roxburghii	Rroxscaffold_1G00011660
rosa_rugosa	Rorug05G0396200 Rorug05G0396200
rosa_samantha	Rh5AG453000 Rh5BG472000 Rh5CG494400 Rh5DG484500
rosa_wichuraiana	Rw0G006060 Rw5G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	114, 958
AccII	CGCG	3 cut(s)	207, 399, 598
AciI	CCGC	4 cut(s)	105, 123, 205, 399
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	3 cut(s)	25, 623, 833
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	176, 344, 433
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	4 cut(s)	97, 292, 839, 902
AjiI	CACGTC	3 cut(s)	683, 971, 1079
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	53, 476, 651, 989
AluI	AGCT	4 cut(s)	53, 476, 651, 989
Alw21I	GWGCWC	3 cut(s)	269, 614, 1078
Alw26I	GTCTC	3 cut(s)	739, 802, 862
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	443, 476, 893
ApoI	RAATTY	3 cut(s)	25, 623, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	836, 868
AspLEI	GCGC	3 cut(s)	399, 443, 598
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	5 cut(s)	31, 133, 191, 437, 698
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	301
BauI	CACGAG	2 cut(s)	435, 1071
BbsI	GAAGAC	7 cut(s)	157, 369, 674, 685, 760, 924, 973
Bbv12I	GWGCWC	3 cut(s)	269, 614, 1078
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	3 cut(s)	430, 463, 880
BccI	CCATC	4 cut(s)	346, 524, 572, 1012
BceAI	ACGGC	2 cut(s)	146, 393
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	739, 802, 862
BfaI	CTAG	3 cut(s)	591, 615, 912
BfoI	RGCGCY	1 cut(s)	444
BglII	AGATCT	1 cut(s)	554
BisI	GCNGC	5 cut(s)	124, 400, 444, 477, 894
BlsI	GCNGC	5 cut(s)	125, 401, 445, 478, 895
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	533
BmgBI	CACGTC	3 cut(s)	683, 971, 1079
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	4 cut(s)	217, 298, 562, 705
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	880, 1123
BpiI	GAAGAC	7 cut(s)	157, 369, 674, 685, 760, 924, 973
BpmI	CTGGAG	1 cut(s)	876
Bpu10I	CCTNAGC	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	1011
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	3 cut(s)	739, 802, 862
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	218, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	1011
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	3 cut(s)	564, 661, 1023
BseJI	GATNNNNATC	1 cut(s)	1011
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	185, 392, 489
BseRI	GAGGAG	6 cut(s)	277, 371, 383, 386, 407, 661
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	3 cut(s)	430, 463, 880
Bsh1236I	CGCG	3 cut(s)	207, 399, 598
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	3 cut(s)	269, 614, 1078
BsiSI	CCGG	3 cut(s)	120, 219, 638
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	3 cut(s)	739, 802, 862
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	3 cut(s)	739, 802, 862
Bsp1286I	GDGCHC	5 cut(s)	269, 301, 339, 614, 1078
Bsp143I	GATC	9 cut(s)	136, 256, 328, 554, 710, 1006, 1012, 1031, 1103
BspACI	CCGC	4 cut(s)	105, 123, 205, 399
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	3 cut(s)	184, 391, 490
BspFNI	CGCG	3 cut(s)	207, 399, 598
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	4 cut(s)	217, 298, 562, 705
BspPI	GGATC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	3 cut(s)	739, 802, 862
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	9 cut(s)	136, 256, 328, 554, 710, 1006, 1012, 1031, 1103
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	2 cut(s)	435, 1071
Bst2BI	CACGAG	2 cut(s)	435, 1071
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	380, 772
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	87, 121
BstDEI	CTNAG	3 cut(s)	171, 378, 498
BstF5I	GGATG	3 cut(s)	564, 661, 1023
BstFNI	CGCG	3 cut(s)	207, 399, 598
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	3 cut(s)	399, 443, 598
BstKTI	GATC	9 cut(s)	139, 259, 331, 557, 713, 1009, 1015, 1034, 1106
BstMAI	GTCTC	3 cut(s)	739, 802, 862
BstMBI	GATC	9 cut(s)	136, 256, 328, 554, 710, 1006, 1012, 1031, 1103
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 167, 213, 245, 405, 595, 893
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	3 cut(s)	207, 399, 598
BstV1I	GCAGC	3 cut(s)	430, 463, 880
BstV2I	GAAGAC	7 cut(s)	157, 369, 674, 685, 760, 924, 973
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	840
BtrI	CACGTC	3 cut(s)	683, 971, 1079
BtsCI	GGATG	3 cut(s)	564, 661, 1023
Cac8I	GCNNGC	2 cut(s)	87, 121
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	3 cut(s)	399, 443, 598
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	533
CseI	GACGC	2 cut(s)	83, 391
Csp6I	GTAC	3 cut(s)	175, 343, 432
CviAII	CATG	6 cut(s)	81, 332, 518, 758, 788, 923
CviQI	GTAC	3 cut(s)	175, 343, 432
DdeI	CTNAG	3 cut(s)	171, 378, 498
DpnI	GATC	9 cut(s)	138, 258, 330, 556, 712, 1008, 1014, 1033, 1105
DpnII	GATC	9 cut(s)	136, 256, 328, 554, 710, 1006, 1012, 1031, 1103
Eam1104I	CTCTTC	2 cut(s)	380, 772
EarI	CTCTTC	2 cut(s)	380, 772
EciI	GGCGGA	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	301
Eco31I	GGTCTC	3 cut(s)	739, 802, 862
Eco47I	GGWCC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	301
FaeI	CATG	6 cut(s)	84, 335, 521, 761, 791, 926
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	6 cut(s)	80, 331, 517, 757, 787, 922
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	2 cut(s)	114, 958
Fnu4HI	GCNGC	5 cut(s)	124, 400, 444, 477, 894
FokI	GGATG	3 cut(s)	551, 668, 1030
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	5 cut(s)	124, 400, 444, 477, 894
FspBI	CTAG	3 cut(s)	591, 615, 912
GlaI	GCGC	3 cut(s)	398, 442, 597
GluI	GCNGC	5 cut(s)	124, 400, 444, 477, 894
GsuI	CTGGAG	1 cut(s)	876
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	3 cut(s)	120, 219, 638
HgaI	GACGC	2 cut(s)	83, 391
HhaI	GCGC	3 cut(s)	399, 443, 598
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	6 cut(s)	84, 335, 521, 761, 791, 926
Hin6I	GCGC	3 cut(s)	397, 441, 596
HinP1I	GCGC	3 cut(s)	397, 441, 596
HindIII	AAGCTT	1 cut(s)	987
HinfI	GANTC	3 cut(s)	4, 271, 574
HpaII	CCGG	3 cut(s)	120, 219, 638
HphI	GGTGA	5 cut(s)	31, 133, 191, 437, 698
Hpy166II	GTNNAC	3 cut(s)	115, 196, 959
Hpy188I	TCNGA	7 cut(s)	70, 261, 315, 381, 537, 929, 1017
Hpy8I	GTNNAC	3 cut(s)	115, 196, 959
Hpy99I	CGWCG	3 cut(s)	161, 191, 1083
HpyAV	CCTTC	9 cut(s)	140, 142, 766, 789, 810, 939, 943, 1083, 1088
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	5 cut(s)	92, 111, 682, 970, 1078
HpyCH4V	TGCA	2 cut(s)	479, 896
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 167, 213, 245, 405, 595, 893
HpyF3I	CTNAG	3 cut(s)	171, 378, 498
HpySE526I	ACGT	5 cut(s)	92, 111, 682, 970, 1078
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	6 cut(s)	84, 335, 521, 761, 791, 926
HspAI	GCGC	3 cut(s)	397, 441, 596
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	9 cut(s)	136, 256, 328, 554, 710, 1006, 1012, 1031, 1103
LmnI	GCTCC	5 cut(s)	264, 296, 394, 648, 703
Lsp1109I	GCAGC	3 cut(s)	430, 463, 880
LweI	GCATC	2 cut(s)	880, 1123
MaeI	CTAG	3 cut(s)	591, 615, 912
MaeII	ACGT	5 cut(s)	92, 111, 682, 970, 1078
MaeIII	GTNAC	2 cut(s)	545, 1068
MalI	GATC	9 cut(s)	138, 258, 330, 556, 712, 1008, 1014, 1033, 1105
MboI	GATC	9 cut(s)	136, 256, 328, 554, 710, 1006, 1012, 1031, 1103
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	5 cut(s)	269, 301, 339, 614, 1078
MluCI	AATT	6 cut(s)	25, 286, 623, 833, 934, 1055
MmeI	TCCRAC	2 cut(s)	293, 681
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	1119, 1122
MspI	CCGG	3 cut(s)	120, 219, 638
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	3 cut(s)	207, 399, 598
MwoI	GCNNNNNNNGC	7 cut(s)	50, 167, 213, 245, 405, 595, 893
NaeI	GCCGGC	1 cut(s)	121
NdeII	GATC	9 cut(s)	136, 256, 328, 554, 710, 1006, 1012, 1031, 1103
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	6 cut(s)	84, 335, 521, 761, 791, 926
NlaIV	GGNNCC	4 cut(s)	217, 298, 562, 705
NmuCI	GTSAC	2 cut(s)	545, 1068
PagI	TCATGA	1 cut(s)	787
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 183
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	4, 271, 574
PflFI	GACNNNGTC	2 cut(s)	155, 923
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	5 cut(s)	125, 401, 445, 478, 895
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	217, 298, 562, 705
PspPI	GGNCC	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	554
PsyI	GACNNNGTC	2 cut(s)	155, 923
RsaI	GTAC	3 cut(s)	176, 344, 433
RsaNI	GTAC	3 cut(s)	175, 343, 432
RseI	CAYNNNNRTG	2 cut(s)	1119, 1122
SatI	GCNGC	5 cut(s)	124, 400, 444, 477, 894
Sau3AI	GATC	9 cut(s)	136, 256, 328, 554, 710, 1006, 1012, 1031, 1103
Sau96I	GGNCC	1 cut(s)	533
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	5 cut(s)	269, 301, 339, 614, 1078
SfaNI	GCATC	2 cut(s)	880, 1123
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	2 cut(s)	1119, 1122
Sse9I	AATT	6 cut(s)	25, 286, 623, 833, 934, 1055
SsiI	CCGC	4 cut(s)	105, 123, 205, 399
SspMI	CTAG	3 cut(s)	591, 615, 912
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	5 cut(s)	95, 114, 685, 973, 1081
TaqI	TCGA	5 cut(s)	55, 135, 189, 227, 572
TasI	AATT	6 cut(s)	25, 286, 623, 833, 934, 1055
TatI	WGTACW	2 cut(s)	342, 431
TauI	GCSGC	2 cut(s)	126, 402
TfiI	GAWTC	3 cut(s)	4, 271, 574
TseFI	GTSAC	2 cut(s)	545, 1068
TseI	GCWGC	3 cut(s)	443, 476, 893
Tsp45I	GTSAC	2 cut(s)	545, 1068
TspDTI	ATGAA	7 cut(s)	17, 69, 480, 672, 846, 1068, 1140
TspGWI	ACGGA	1 cut(s)	309
Tth111I	GACNNNGTC	2 cut(s)	155, 923
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	3 cut(s)	25, 623, 833
XbaI	TCTAGA	1 cut(s)	911
XmiI	GTMKAC	2 cut(s)	114, 958
XspI	CTAG	3 cut(s)	591, 615, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.