Prupe.6G058600_v2.0.a1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
4089407 .. 4092157
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G058600.2

Sequence Viewer

Length: 1530 bp
ATGTCGGCCAGATGGGCTGAGATTGAGAAAGAATCCAAGCCCAATAAGACCCGCGTGGAGATCCGCTCATCTTCGAAACAGTGTAGAAGAATTTTGGCAAAACTTAGGGTTAAGTTCAACCCAGGAGACCCCGAGAGAGAAGGGAGAAGCACAAAATTTTGTTGCACTCAAGCAATGAACCCGCTAACCCTAGTGAAACGAATTCAGAACATCAATTCCAGAGAAGCCCAATTAGGGATTTCAGAGGAAGCTTCATGGCACGCCAAGTACAAAGACTCCGCTTACGTCTACGTCGGCGGCATTCCTTTTGATCTCACCGAAGGTGATCTTCTCGCTGTTTTCGCACAATATGGAGAGGTCGTCGACGTGAACCTGGTTCGCGATAAAGGGACTGGGAAATCCAAAGGGTTCTCATTTATTGCATATGAGGACCAGAGAAGTACGGTTCTTGCTGTGGATAATCTGAATGGAGCTCAAATTTTGGGTCGAACAATTAGGGTGGATCATGTGACTAAATACAAAAAGAAGGAAGAGGAAGATGAAGAGGAAGAGCAGAGGAAGAGGGAGGAACGAGGTGTGTGCCGTGCTTTCCAAAGAGGTGAATGTACTCGCGGAGCTGGGTGCAGATTTTCTCACAATGAGCAAAGAGCTGCAAACACAGGTTGGGGTGATCAAGACTCGAAATGGGGGCGTGACAGGTATGATGGCCCAAAACAGGGTGAGAAAAGATCTAACACTACTCCGTCAAATCGTGTTCCAGAGGCTGAAGTTCAAGAAGATTTACACTCCAGAGGAAAGGGATATGGGAGGGTCTTCGAAAGTCACTCTAAGCAAAGTGATGGGAGAGAGGAAAAGAGATTGGGAAGACACGAGGATGATGAAAGGTTTGAGCTTAGATCAAGAGATCATGGTAGGGGGGAAGAAAAGAGACCAAGAAGACGCAGTGAGGATGATGAATTGGGGCAAAATTCAAGAGAAGATTATGGTAGGAGGGAAAAACAGAGATTAGGAAGGCAAAATGGTCATGAATTGCAGCCAAAGTCAAGAGAAGATCATGACAGAAGGGAAGATAAGAGACCCAGAAGGCAAGGTGGTGATGTGGAATTTGAGCCAAAGCTGAAGTCTAGAGACGATCATGATCAGAGGGAAGATGATAGAAGGGAAGATAGGAGAACAAGAAGGCGTAGTGATGATGGTGAATTTGAGCCAAAATCTAGAGAAGATCGTGATAGGAGGGTAGATGATAGTAGGGAAGATAAGAGACTGAGAAGGCATGCTGGTGATGATGAATTTGATCCAAAATCTAAGGATCATGATAGGACAGAAGAAAAGAGAAGGTACGCTGATGATGAATATCAGCCGAAGTCAAGAGAAGATAAGTGGGAAGAACAGAGGTCAAGAAGACGCAATGTTGATGAATTTGAGCTGAAGTCAAGAGCAGGCGAGGATAAGAGGAAAGGAGAGAGACTGAGAAGGTATGAAGATGATGAGTTTCAGCCAAAATCCAGAGAAGTTCGTCGTAGAGAGTAA

Protein Analysis

510

Amino Acids

60.43

Weight (kDa)

9.01

Isoelectric Point (pI)

75.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 66
AccI GTMKAC 2 cut(s) 288, 363
AccII CGCG 3 cut(s) 54, 381, 612
AciI CCGC 6 cut(s) 52, 64, 182, 279, 297, 612
AclWI GGATC 4 cut(s) 55, 510, 1289, 1317
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 9 cut(s) 90, 155, 201, 477, 967, 1103, 1199, 1289, 1418
AcuI CTGAAG 3 cut(s) 786, 1139, 1448
AfaI GTAC 4 cut(s) 269, 442, 607, 1340
AfiI CCNNNNNNNGG 3 cut(s) 234, 715, 716
AgsI TTSAA 3 cut(s) 118, 773, 972
AjiI CACGTC 1 cut(s) 367
AjnI CCWGG 2 cut(s) 121, 372
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 7 cut(s) 251, 473, 617, 650, 892, 1117, 1426
AluI AGCT 7 cut(s) 251, 473, 617, 650, 892, 1117, 1426
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 6 cut(s) 120, 922, 1069, 1122, 1255, 1459
AlwI GGATC 4 cut(s) 55, 510, 1289, 1317
AlwNI CAGNNNCTG 1 cut(s) 764
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 6, 706
ApeKI GCWGC 2 cut(s) 650, 1033
ApoI RAATTY 9 cut(s) 90, 155, 201, 477, 967, 1103, 1199, 1289, 1418
ArsI GACNNNNNNTTYG 4 cut(s) 469, 501, 1106, 1138
AspS9I GGNCC 2 cut(s) 430, 707
AsuHPI GGTGA 8 cut(s) 307, 335, 611, 680, 731, 1106, 1208, 1292
AsuII TTCGAA 2 cut(s) 74, 816
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 430
BanII GRGCYC 1 cut(s) 475
BauI CACGAG 1 cut(s) 869
BbsI GAAGAC 4 cut(s) 805, 871, 943, 1408
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 2 cut(s) 637, 1045
BccI CCATC 4 cut(s) 6, 698, 833, 1187
BceAI ACGGC 1 cut(s) 567
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 2 cut(s) 123, 374
BclI TGATCA 2 cut(s) 670, 1138
BcoDI GTCTC 6 cut(s) 120, 922, 1069, 1122, 1255, 1459
BfaI CTAG 3 cut(s) 191, 1125, 1215
BglI GCCNNNNNGGC 1 cut(s) 14
BglII AGATCT 1 cut(s) 728
BisI GCNGC 3 cut(s) 298, 651, 1034
BlsI GCNGC 3 cut(s) 299, 652, 1035
Bme1390I CCNGG 2 cut(s) 123, 374
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 430, 707
BmrFI CCNGG 2 cut(s) 123, 374
BmrI ACTGGG 1 cut(s) 402
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 4 cut(s) 805, 871, 943, 1408
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 772
Bpu14I TTCGAA 2 cut(s) 74, 816
BpuEI CTTGAG 1 cut(s) 153
BsaBI GATNNNNATC 2 cut(s) 1137, 1353
BsaI GGTCTC 3 cut(s) 120, 922, 1069
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 260, 290, 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 715, 716
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 2 cut(s) 180, 1414
Bse8I GATNNNNATC 2 cut(s) 1137, 1353
BseBI CCWGG 2 cut(s) 123, 374
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 880, 955
BseJI GATNNNNATC 2 cut(s) 1137, 1353
BseLI CCNNNNNNNGG 3 cut(s) 234, 715, 716
BseMI GCAATG 2 cut(s) 180, 1414
BseMII CTCAG 3 cut(s) 9, 1256, 1460
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 2 cut(s) 637, 1045
BseYI CCCAGC 1 cut(s) 617
BsgI GTGCAG 1 cut(s) 643
Bsh1236I CGCG 3 cut(s) 54, 381, 612
BshFI GGCC 2 cut(s) 8, 708
BsiHKAI GWGCWC 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 3 cut(s) 234, 715, 716
BsmAI GTCTC 6 cut(s) 120, 922, 1069, 1122, 1255, 1459
BsmBI CGTCTC 1 cut(s) 1122
BsmFI GGGAC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 2 cut(s) 8, 708
Bso31I GGTCTC 3 cut(s) 120, 922, 1069
BsoBI CYCGRG 1 cut(s) 131
Bsp119I TTCGAA 2 cut(s) 74, 816
Bsp1286I GDGCHC 1 cut(s) 475
Bsp68I TCGCGA 1 cut(s) 381
BspACI CCGC 6 cut(s) 52, 64, 182, 279, 297, 612
BspANI GGCC 2 cut(s) 8, 708
BspCNI CTCAG 3 cut(s) 10, 1257, 1461
BspFNI CGCG 3 cut(s) 54, 381, 612
BspHI TCATGA 4 cut(s) 1024, 1054, 1135, 1312
BspPI GGATC 4 cut(s) 55, 510, 1289, 1317
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 2 cut(s) 74, 816
BspTNI GGTCTC 3 cut(s) 120, 922, 1069
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 2 cut(s) 180, 1414
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 121
BssSI CACGAG 1 cut(s) 869
Bst2BI CACGAG 1 cut(s) 869
Bst2UI CCWGG 2 cut(s) 123, 374
Bst4CI ACNGT 2 cut(s) 81, 445
Bst6I CTCTTC 4 cut(s) 525, 537, 543, 554
BstBI TTCGAA 2 cut(s) 74, 816
BstC8I GCNNGC 3 cut(s) 261, 1275, 1441
BstDEI CTNAG 7 cut(s) 18, 104, 828, 893, 1265, 1305, 1469
BstF5I GGATG 2 cut(s) 880, 955
BstFNI CGCG 3 cut(s) 54, 381, 612
BstMAI GTCTC 6 cut(s) 120, 922, 1069, 1122, 1255, 1459
BstMWI GCNNNNNNNGC 2 cut(s) 14, 341
BstNI CCWGG 2 cut(s) 123, 374
BstNSI RCATGY 1 cut(s) 1277
BstSCI CCNGG 2 cut(s) 121, 372
BstUI CGCG 3 cut(s) 54, 381, 612
BstV1I GCAGC 2 cut(s) 637, 1045
BstV2I GAAGAC 4 cut(s) 805, 871, 943, 1408
BstX2I RGATCY 2 cut(s) 60, 728
BstYI RGATCY 2 cut(s) 60, 728
BsuRI GGCC 2 cut(s) 8, 708
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 880, 955
BtsI GCAGTG 1 cut(s) 949
BtsIMutI CAGTG 2 cut(s) 86, 949
BtuMI TCGCGA 1 cut(s) 381
Cac8I GCNNGC 3 cut(s) 261, 1275, 1441
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 4 cut(s) 1024, 1054, 1135, 1312
Cfr13I GGNCC 2 cut(s) 430, 707
CseI GACGC 2 cut(s) 948, 1413
CsiI ACCWGGT 1 cut(s) 372
Csp6I GTAC 4 cut(s) 268, 441, 606, 1339
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CviAII CATG 8 cut(s) 255, 506, 908, 1025, 1055, 1136, 1274, 1313
CviQI GTAC 4 cut(s) 268, 441, 606, 1339
DdeI CTNAG 7 cut(s) 18, 104, 828, 893, 1265, 1305, 1469
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 4 cut(s) 525, 537, 543, 554
EarI CTCTTC 4 cut(s) 525, 537, 543, 554
Ecl136II GAGCTC 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 475
Eco31I GGTCTC 3 cut(s) 120, 922, 1069
Eco47I GGWCC 1 cut(s) 430
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 3 cut(s) 786, 1139, 1448
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 121, 372
EcoT38I GRGCYC 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 1122
FaeI CATG 8 cut(s) 258, 509, 911, 1028, 1058, 1139, 1277, 1316
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 403
FatI CATG 8 cut(s) 254, 505, 907, 1024, 1054, 1135, 1273, 1312
FauI CCCGC 2 cut(s) 59, 189
FauNDI CATATG 1 cut(s) 424
FbaI TGATCA 2 cut(s) 670, 1138
FblI GTMKAC 2 cut(s) 288, 363
Fnu4HI GCNGC 3 cut(s) 298, 651, 1034
FokI GGATG 2 cut(s) 887, 962
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 3 cut(s) 298, 651, 1034
FspBI CTAG 3 cut(s) 191, 1125, 1215
GluI GCNGC 3 cut(s) 298, 651, 1034
GsaI CCCAGC 1 cut(s) 621
GsuI CTGGAG 1 cut(s) 772
HaeIII GGCC 2 cut(s) 8, 708
HgaI GACGC 2 cut(s) 948, 1413
Hin1II CATG 8 cut(s) 258, 509, 911, 1028, 1058, 1139, 1277, 1316
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 3 cut(s) 32, 275, 677
HphI GGTGA 8 cut(s) 307, 335, 611, 680, 731, 1106, 1208, 1292
Hpy166II GTNNAC 3 cut(s) 289, 364, 370
Hpy188I TCNGA 4 cut(s) 207, 244, 465, 1143
Hpy8I GTNNAC 3 cut(s) 289, 364, 370
Hpy99I CGWCG 4 cut(s) 296, 365, 368, 1521
HpyCH4III ACNGT 2 cut(s) 81, 445
HpyCH4IV ACGT 3 cut(s) 285, 291, 366
HpyCH4V TGCA 5 cut(s) 165, 422, 624, 653, 1033
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 341
HpyF3I CTNAG 7 cut(s) 18, 104, 828, 893, 1265, 1305, 1469
HpySE526I ACGT 3 cut(s) 285, 291, 366
Hsp92II CATG 8 cut(s) 258, 509, 911, 1028, 1058, 1139, 1277, 1316
Ksp22I TGATCA 2 cut(s) 670, 1138
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 2 cut(s) 470, 614
Lsp1109I GCAGC 2 cut(s) 637, 1045
MabI ACCWGGT 1 cut(s) 372
MaeI CTAG 3 cut(s) 191, 1125, 1215
MaeII ACGT 3 cut(s) 285, 291, 366
MaeIII GTNAC 3 cut(s) 508, 692, 821
MbiI CCGCTC 1 cut(s) 66
MflI RGATCY 2 cut(s) 60, 728
MhlI GDGCHC 1 cut(s) 475
MlyI GAGTC 2 cut(s) 269, 671
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 2 cut(s) 873, 1278
MspR9I CCNGG 2 cut(s) 123, 374
Mva1269I GAATGC 1 cut(s) 300
MvaI CCWGG 2 cut(s) 123, 374
MvnI CGCG 3 cut(s) 54, 381, 612
MwoI GCNNNNNNNGC 2 cut(s) 14, 341
NdeI CATATG 1 cut(s) 424
NlaIII CATG 8 cut(s) 258, 509, 911, 1028, 1058, 1139, 1277, 1316
NmuCI GTSAC 3 cut(s) 508, 692, 821
NruI TCGCGA 1 cut(s) 381
NspI RCATGY 1 cut(s) 1277
NspV TTCGAA 2 cut(s) 74, 816
PaeI GCATGC 1 cut(s) 1277
PagI TCATGA 4 cut(s) 1024, 1054, 1135, 1312
PciSI GCTCTTC 1 cut(s) 543
PctI GAATGC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 299, 652, 1035
PleI GAGTC 2 cut(s) 269, 671
PpsI GAGTC 2 cut(s) 269, 671
Psp124BI GAGCTC 1 cut(s) 475
Psp6I CCWGG 2 cut(s) 121, 372
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 2 cut(s) 121, 372
PspPI GGNCC 2 cut(s) 430, 707
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 60, 728
RruI TCGCGA 1 cut(s) 381
RsaI GTAC 4 cut(s) 269, 442, 607, 1340
RsaNI GTAC 4 cut(s) 268, 441, 606, 1339
RseI CAYNNNNRTG 2 cut(s) 873, 1278
SacI GAGCTC 1 cut(s) 475
SalI GTCGAC 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 3 cut(s) 298, 651, 1034
Sau96I GGNCC 2 cut(s) 430, 707
SchI GAGTC 2 cut(s) 269, 671
ScrFI CCNGG 2 cut(s) 123, 374
SduI GDGCHC 1 cut(s) 475
SexAI ACCWGGT 1 cut(s) 372
SfuI TTCGAA 2 cut(s) 74, 816
SgrDI CGTCGACG 1 cut(s) 362
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 2 cut(s) 873, 1278
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 1277
SsiI CCGC 6 cut(s) 52, 64, 182, 279, 297, 612
SspMI CTAG 3 cut(s) 191, 1125, 1215
SstI GAGCTC 1 cut(s) 475
StyD4I CCNGG 2 cut(s) 121, 372
TaaI ACNGT 2 cut(s) 81, 445
TaiI ACGT 3 cut(s) 288, 294, 369
TaqI TCGA 5 cut(s) 74, 363, 487, 680, 816
TatI WGTACW 2 cut(s) 267, 605
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 86, 949
TseFI GTSAC 3 cut(s) 508, 692, 821
TseI GCWGC 2 cut(s) 650, 1033
Tsp45I GTSAC 3 cut(s) 508, 692, 821
TspGWI ACGGA 1 cut(s) 732
TspRI CASTG 2 cut(s) 86, 949
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 9 cut(s) 90, 155, 201, 477, 967, 1103, 1199, 1289, 1418
XbaI TCTAGA 2 cut(s) 1124, 1214
XceI RCATGY 1 cut(s) 1277
XmiI GTMKAC 2 cut(s) 288, 363
XspI CTAG 3 cut(s) 191, 1125, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.