zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47120 AT3G47120 AT5G58790 |
| fragaria_vesca | FvH4_3g38440 |
| malus_domestica | MD03G1072000.v1.1 MD11G1076000.v1.1 |
| prunus_persica | Prupe.6G058600_v2.0.a1 Prupe.6G058600_v2.0.a1 |
| pyrus_communis | pycom03g05820 pycom11g06370 |
| rosa_chinensis | RchiOBHm_Chr5g0069091 |
| rosa_laevigata | RLG00000036037 |
| rosa_multiflora | Rmu_sc0000853.1_g000035 Rmu_sc0000936.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00011660 |
| rosa_rugosa | Rorug05G0396200 Rorug05G0396200 |
| rosa_samantha | Rh5AG453000 Rh5BG472000 Rh5CG494400 Rh5DG484500 |
| rosa_wichuraiana | Rw0G006060 Rw5G042300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 487 |
| AccB1I | GGYRCC | 2 cut(s) | 10, 824 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 571 |
| AccII | CGCG | 1 cut(s) | 471 |
| AciI | CCGC | 4 cut(s) | 8, 289, 369, 387 |
| AcsI | RAATTY | 3 cut(s) | 238, 1034, 1106 |
| AcuI | CTGAAG | 1 cut(s) | 128 |
| AdeI | CACNNNGTG | 1 cut(s) | 753 |
| AfaI | GTAC | 6 cut(s) | 359, 440, 532, 608, 697, 900 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 571 |
| AgsI | TTSAA | 3 cut(s) | 556, 892, 1112 |
| AjiI | CACGTC | 2 cut(s) | 947, 1244 |
| AjnI | CCWGG | 1 cut(s) | 820 |
| AluBI | AGCT | 7 cut(s) | 40, 233, 317, 707, 740, 1120, 1262 |
| AluI | AGCT | 7 cut(s) | 40, 233, 317, 707, 740, 1120, 1262 |
| Alw26I | GTCTC | 5 cut(s) | 243, 1003, 1075, 1135, 1225 |
| AoxI | GGCC | 2 cut(s) | 178, 912 |
| ApeKI | GCWGC | 2 cut(s) | 740, 1166 |
| ApoI | RAATTY | 3 cut(s) | 238, 1034, 1106 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1091, 1109, 1123, 1141 |
| AspS9I | GGNCC | 7 cut(s) | 169, 174, 179, 480, 520, 797, 912 |
| AsuC2I | CCSGG | 2 cut(s) | 167, 484 |
| AsuHPI | GGTGA | 5 cut(s) | 73, 397, 701, 962, 1169 |
| AvaII | GGWCC | 5 cut(s) | 169, 174, 480, 520, 797 |
| BaeGI | GKGCMC | 1 cut(s) | 47 |
| BanI | GGYRCC | 2 cut(s) | 10, 824 |
| BanII | GRGCYC | 2 cut(s) | 565, 1179 |
| BauI | CACGAG | 2 cut(s) | 699, 1344 |
| BbsI | GAAGAC | 2 cut(s) | 949, 1024 |
| BbvCI | CCTCAGC | 1 cut(s) | 762 |
| BbvI | GCAGC | 2 cut(s) | 727, 1153 |
| BccI | CCATC | 6 cut(s) | 132, 190, 434, 788, 836, 1285 |
| BceAI | ACGGC | 1 cut(s) | 657 |
| BciT130I | CCWGG | 1 cut(s) | 822 |
| BclI | TGATCA | 1 cut(s) | 592 |
| BcnI | CCSGG | 2 cut(s) | 167, 484 |
| BcoDI | GTCTC | 5 cut(s) | 243, 1003, 1075, 1135, 1225 |
| BfaI | CTAG | 3 cut(s) | 125, 281, 855 |
| BfmI | CTRYAG | 1 cut(s) | 1128 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 509 |
| BisI | GCNGC | 4 cut(s) | 9, 388, 741, 1167 |
| BlpI | GCTNAGC | 1 cut(s) | 36 |
| BlsI | GCNGC | 4 cut(s) | 10, 389, 742, 1168 |
| Bme1390I | CCNGG | 3 cut(s) | 167, 484, 822 |
| Bme18I | GGWCC | 5 cut(s) | 169, 174, 480, 520, 797 |
| BmgBI | CACGTC | 2 cut(s) | 947, 1244 |
| BmgT120I | GGNCC | 7 cut(s) | 169, 174, 179, 480, 520, 797, 912 |
| BmiI | GGNNCC | 6 cut(s) | 12, 170, 481, 562, 826, 969 |
| BmrFI | CCNGG | 3 cut(s) | 167, 484, 822 |
| BmsI | GCATC | 2 cut(s) | 128, 1153 |
| BpiI | GAAGAC | 2 cut(s) | 949, 1024 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 301, 333 |
| Bpu10I | CCTNAGC | 1 cut(s) | 762 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 36 |
| BpuMI | CCSGG | 2 cut(s) | 167, 484 |
| BsaI | GGTCTC | 4 cut(s) | 1003, 1075, 1135, 1225 |
| BsaJI | CCNNGG | 2 cut(s) | 108, 915 |
| BsaWI | WCCGGW | 2 cut(s) | 171, 901 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 350, 380, 435, 465, 552, 582 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 571 |
| Bse118I | RCCGGY | 1 cut(s) | 383 |
| BseBI | CCWGG | 1 cut(s) | 822 |
| BseDI | CCNNGG | 2 cut(s) | 108, 915 |
| BseGI | GGATG | 4 cut(s) | 143, 716, 828, 961 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 571 |
| BseMII | CTCAG | 2 cut(s) | 27, 753 |
| BseRI | GAGGAG | 5 cut(s) | 410, 541, 650, 653, 671 |
| BseSI | GKGCMC | 1 cut(s) | 47 |
| BseXI | GCAGC | 2 cut(s) | 727, 1153 |
| BseYI | CCCAGC | 1 cut(s) | 40 |
| Bsh1236I | CGCG | 1 cut(s) | 471 |
| BshFI | GGCC | 2 cut(s) | 180, 914 |
| BshNI | GGYRCC | 2 cut(s) | 10, 824 |
| BsiSI | CCGG | 7 cut(s) | 135, 166, 172, 177, 384, 483, 902 |
| BslFI | GGGAC | 2 cut(s) | 493, 792 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 571 |
| BsmAI | GTCTC | 5 cut(s) | 243, 1003, 1075, 1135, 1225 |
| BsmBI | CGTCTC | 1 cut(s) | 243 |
| BsmFI | GGGAC | 2 cut(s) | 493, 792 |
| BsmI | GAATGC | 1 cut(s) | 390 |
| BsnI | GGCC | 2 cut(s) | 180, 914 |
| Bso31I | GGTCTC | 4 cut(s) | 1003, 1075, 1135, 1225 |
| Bsp1286I | GDGCHC | 3 cut(s) | 47, 565, 1179 |
| Bsp143I | GATC | 7 cut(s) | 400, 415, 592, 974, 1192, 1279, 1304 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 36 |
| Bsp68I | TCGCGA | 1 cut(s) | 471 |
| BspACI | CCGC | 4 cut(s) | 8, 289, 369, 387 |
| BspANI | GGCC | 2 cut(s) | 180, 914 |
| BspCNI | CTCAG | 2 cut(s) | 28, 754 |
| BspFNI | CGCG | 1 cut(s) | 471 |
| BspHI | TCATGA | 3 cut(s) | 1060, 1264, 1321 |
| BspLI | GGNNCC | 6 cut(s) | 12, 170, 481, 562, 826, 969 |
| BspT107I | GGYRCC | 2 cut(s) | 10, 824 |
| BspTNI | GGTCTC | 4 cut(s) | 1003, 1075, 1135, 1225 |
| BsrFI | RCCGGY | 1 cut(s) | 383 |
| BssAI | RCCGGY | 1 cut(s) | 383 |
| BssECI | CCNNGG | 2 cut(s) | 108, 915 |
| BssMI | GATC | 7 cut(s) | 400, 415, 592, 974, 1192, 1279, 1304 |
| BssSI | CACGAG | 2 cut(s) | 699, 1344 |
| BssT1I | CCWWGG | 1 cut(s) | 915 |
| Bst2BI | CACGAG | 2 cut(s) | 699, 1344 |
| Bst2UI | CCWGG | 1 cut(s) | 822 |
| Bst4CI | ACNGT | 4 cut(s) | 49, 109, 438, 898 |
| Bst6I | CTCTTC | 5 cut(s) | 95, 615, 627, 644, 1213 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 213, 351, 385 |
| BstDEI | CTNAG | 2 cut(s) | 36, 762 |
| BstDSI | CCRYGG | 1 cut(s) | 108 |
| BstF5I | GGATG | 4 cut(s) | 143, 716, 828, 961 |
| BstFNI | CGCG | 1 cut(s) | 471 |
| BstKTI | GATC | 7 cut(s) | 403, 418, 595, 977, 1195, 1282, 1307 |
| BstMAI | GTCTC | 5 cut(s) | 243, 1003, 1075, 1135, 1225 |
| BstMBI | GATC | 7 cut(s) | 400, 415, 592, 974, 1192, 1279, 1304 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 314, 431, 509, 859 |
| BstNI | CCWGG | 1 cut(s) | 822 |
| BstSCI | CCNGG | 3 cut(s) | 165, 482, 820 |
| BstSFI | CTRYAG | 1 cut(s) | 1128 |
| BstSLI | GKGCMC | 1 cut(s) | 47 |
| BstUI | CGCG | 1 cut(s) | 471 |
| BstV1I | GCAGC | 2 cut(s) | 727, 1153 |
| BstV2I | GAAGAC | 2 cut(s) | 949, 1024 |
| BsuRI | GGCC | 2 cut(s) | 180, 914 |
| BtgI | CCRYGG | 1 cut(s) | 108 |
| BtgZI | GCGATG | 2 cut(s) | 105, 278 |
| BtrI | CACGTC | 2 cut(s) | 947, 1244 |
| BtsCI | GGATG | 4 cut(s) | 143, 716, 828, 961 |
| BtuMI | TCGCGA | 1 cut(s) | 471 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 213, 351, 385 |
| CciI | TCATGA | 3 cut(s) | 1060, 1264, 1321 |
| Cfr10I | RCCGGY | 1 cut(s) | 383 |
| Cfr13I | GGNCC | 7 cut(s) | 169, 174, 179, 480, 520, 797, 912 |
| CpoI | CGGWCCG | 1 cut(s) | 174 |
| CseI | GACGC | 1 cut(s) | 347 |
| Csp6I | GTAC | 6 cut(s) | 358, 439, 531, 607, 696, 899 |
| CspI | CGGWCCG | 1 cut(s) | 174 |
| CviAII | CATG | 7 cut(s) | 345, 596, 1022, 1061, 1196, 1265, 1322 |
| CviQI | GTAC | 6 cut(s) | 358, 439, 531, 607, 696, 899 |
| DdeI | CTNAG | 2 cut(s) | 36, 762 |
| DpnI | GATC | 7 cut(s) | 402, 417, 594, 976, 1194, 1281, 1306 |
| DpnII | GATC | 7 cut(s) | 400, 415, 592, 974, 1192, 1279, 1304 |
| DraIII | CACNNNGTG | 1 cut(s) | 753 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 487 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 487 |
| Eam1104I | CTCTTC | 5 cut(s) | 95, 615, 627, 644, 1213 |
| EarI | CTCTTC | 5 cut(s) | 95, 615, 627, 644, 1213 |
| Eco130I | CCWWGG | 1 cut(s) | 915 |
| Eco24I | GRGCYC | 2 cut(s) | 565, 1179 |
| Eco31I | GGTCTC | 4 cut(s) | 1003, 1075, 1135, 1225 |
| Eco47I | GGWCC | 5 cut(s) | 169, 174, 480, 520, 797 |
| Eco57I | CTGAAG | 1 cut(s) | 128 |
| EcoO109I | RGGNCCY | 1 cut(s) | 912 |
| EcoRII | CCWGG | 1 cut(s) | 820 |
| EcoT14I | CCWWGG | 1 cut(s) | 915 |
| EcoT38I | GRGCYC | 2 cut(s) | 565, 1179 |
| ErhI | CCWWGG | 1 cut(s) | 915 |
| Esp3I | CGTCTC | 1 cut(s) | 243 |
| FaeI | CATG | 7 cut(s) | 348, 599, 1025, 1064, 1199, 1268, 1325 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 179, 211 |
| FaqI | GGGAC | 2 cut(s) | 493, 792 |
| FatI | CATG | 7 cut(s) | 344, 595, 1021, 1060, 1195, 1264, 1321 |
| FbaI | TGATCA | 1 cut(s) | 592 |
| Fnu4HI | GCNGC | 4 cut(s) | 9, 388, 741, 1167 |
| FokI | GGATG | 4 cut(s) | 150, 723, 815, 968 |
| FriOI | GRGCYC | 2 cut(s) | 565, 1179 |
| Fsp4HI | GCNGC | 4 cut(s) | 9, 388, 741, 1167 |
| FspBI | CTAG | 3 cut(s) | 125, 281, 855 |
| GluI | GCNGC | 4 cut(s) | 9, 388, 741, 1167 |
| GsaI | CCCAGC | 1 cut(s) | 44 |
| HaeIII | GGCC | 2 cut(s) | 180, 914 |
| HapII | CCGG | 7 cut(s) | 135, 166, 172, 177, 384, 483, 902 |
| HgaI | GACGC | 1 cut(s) | 347 |
| Hin1II | CATG | 7 cut(s) | 348, 599, 1025, 1064, 1199, 1268, 1325 |
| HincII | GTYRAC | 2 cut(s) | 163, 460 |
| HindII | GTYRAC | 2 cut(s) | 163, 460 |
| HinfI | GANTC | 3 cut(s) | 148, 292, 365 |
| HpaII | CCGG | 7 cut(s) | 135, 166, 172, 177, 384, 483, 902 |
| HphI | GGTGA | 5 cut(s) | 73, 397, 701, 962, 1169 |
| Hpy166II | GTNNAC | 3 cut(s) | 163, 379, 460 |
| Hpy188I | TCNGA | 5 cut(s) | 147, 297, 334, 579, 801 |
| Hpy8I | GTNNAC | 3 cut(s) | 163, 379, 460 |
| Hpy99I | CGWCG | 4 cut(s) | 257, 260, 455, 1103 |
| HpyAV | CCTTC | 7 cut(s) | 404, 1039, 1062, 1083, 1143, 1361, 1377 |
| HpyCH4III | ACNGT | 4 cut(s) | 49, 109, 438, 898 |
| HpyCH4IV | ACGT | 3 cut(s) | 375, 946, 1243 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 743 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 314, 431, 509, 859 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 762 |
| HpySE526I | ACGT | 3 cut(s) | 375, 946, 1243 |
| Hsp92II | CATG | 7 cut(s) | 348, 599, 1025, 1064, 1199, 1268, 1325 |
| KroI | GCCGGC | 1 cut(s) | 383 |
| KroNI | GCCGGC | 1 cut(s) | 385 |
| Ksp22I | TGATCA | 1 cut(s) | 592 |
| Kzo9I | GATC | 7 cut(s) | 400, 415, 592, 974, 1192, 1279, 1304 |
| LmnI | GCTCC | 5 cut(s) | 560, 640, 658, 704, 967 |
| Lsp1109I | GCAGC | 2 cut(s) | 727, 1153 |
| LweI | GCATC | 2 cut(s) | 128, 1153 |
| MaeI | CTAG | 3 cut(s) | 125, 281, 855 |
| MaeII | ACGT | 3 cut(s) | 375, 946, 1243 |
| MaeIII | GTNAC | 1 cut(s) | 809 |
| MalI | GATC | 7 cut(s) | 402, 417, 594, 976, 1194, 1281, 1306 |
| MboI | GATC | 7 cut(s) | 400, 415, 592, 974, 1192, 1279, 1304 |
| MhlI | GDGCHC | 3 cut(s) | 47, 565, 1179 |
| MluCI | AATT | 7 cut(s) | 219, 238, 320, 550, 1034, 1106, 1328 |
| MlyI | GAGTC | 1 cut(s) | 359 |
| MmeI | TCCRAC | 2 cut(s) | 557, 945 |
| MreI | CGCCGGCG | 1 cut(s) | 383 |
| MroNI | GCCGGC | 1 cut(s) | 383 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1392 |
| MspI | CCGG | 7 cut(s) | 135, 166, 172, 177, 384, 483, 902 |
| MspR9I | CCNGG | 3 cut(s) | 167, 484, 822 |
| Mva1269I | GAATGC | 1 cut(s) | 390 |
| MvaI | CCWGG | 1 cut(s) | 822 |
| MvnI | CGCG | 1 cut(s) | 471 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 314, 431, 509, 859 |
| NaeI | GCCGGC | 1 cut(s) | 385 |
| NciI | CCSGG | 2 cut(s) | 167, 484 |
| NdeII | GATC | 7 cut(s) | 400, 415, 592, 974, 1192, 1279, 1304 |
| NgoMIV | GCCGGC | 1 cut(s) | 383 |
| NlaIII | CATG | 7 cut(s) | 348, 599, 1025, 1064, 1199, 1268, 1325 |
| NlaIV | GGNNCC | 6 cut(s) | 12, 170, 481, 562, 826, 969 |
| NmuCI | GTSAC | 1 cut(s) | 809 |
| NruI | TCGCGA | 1 cut(s) | 471 |
| PagI | TCATGA | 3 cut(s) | 1060, 1264, 1321 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 447 |
| PctI | GAATGC | 1 cut(s) | 390 |
| PdiI | GCCGGC | 1 cut(s) | 385 |
| PfeI | GAWTC | 2 cut(s) | 148, 292 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 571 |
| PkrI | GCNGC | 4 cut(s) | 10, 389, 742, 1168 |
| PleI | GAGTC | 1 cut(s) | 359 |
| PpsI | GAGTC | 1 cut(s) | 359 |
| Psp6I | CCWGG | 1 cut(s) | 820 |
| PspFI | CCCAGC | 1 cut(s) | 40 |
| PspGI | CCWGG | 1 cut(s) | 820 |
| PspN4I | GGNNCC | 6 cut(s) | 12, 170, 481, 562, 826, 969 |
| PspPI | GGNCC | 7 cut(s) | 169, 174, 179, 480, 520, 797, 912 |
| RruI | TCGCGA | 1 cut(s) | 471 |
| RsaI | GTAC | 6 cut(s) | 359, 440, 532, 608, 697, 900 |
| RsaNI | GTAC | 6 cut(s) | 358, 439, 531, 607, 696, 899 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1392 |
| Rsr2I | CGGWCCG | 1 cut(s) | 174 |
| RsrII | CGGWCCG | 1 cut(s) | 174 |
| SatI | GCNGC | 4 cut(s) | 9, 388, 741, 1167 |
| Sau3AI | GATC | 7 cut(s) | 400, 415, 592, 974, 1192, 1279, 1304 |
| Sau96I | GGNCC | 7 cut(s) | 169, 174, 179, 480, 520, 797, 912 |
| SchI | GAGTC | 1 cut(s) | 359 |
| ScrFI | CCNGG | 3 cut(s) | 167, 484, 822 |
| SduI | GDGCHC | 3 cut(s) | 47, 565, 1179 |
| SfaNI | GCATC | 2 cut(s) | 128, 1153 |
| SfcI | CTRYAG | 1 cut(s) | 1128 |
| SgrAI | CRCCGGYG | 1 cut(s) | 383 |
| SinI | GGWCC | 5 cut(s) | 169, 174, 480, 520, 797 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1392 |
| Sse9I | AATT | 7 cut(s) | 219, 238, 320, 550, 1034, 1106, 1328 |
| SsiI | CCGC | 4 cut(s) | 8, 289, 369, 387 |
| SspMI | CTAG | 3 cut(s) | 125, 281, 855 |
| StyD4I | CCNGG | 3 cut(s) | 165, 482, 820 |
| StyI | CCWWGG | 1 cut(s) | 915 |
| TaaI | ACNGT | 4 cut(s) | 49, 109, 438, 898 |
| TaiI | ACGT | 3 cut(s) | 378, 949, 1246 |
| TaqI | TCGA | 2 cut(s) | 26, 453 |
| TaqII | GACCGA | 1 cut(s) | 1027 |
| TasI | AATT | 7 cut(s) | 219, 238, 320, 550, 1034, 1106, 1328 |
| TatI | WGTACW | 3 cut(s) | 357, 606, 695 |
| TauI | GCSGC | 2 cut(s) | 11, 390 |
| TfiI | GAWTC | 2 cut(s) | 148, 292 |
| TseFI | GTSAC | 1 cut(s) | 809 |
| TseI | GCWGC | 2 cut(s) | 740, 1166 |
| Tsp45I | GTSAC | 1 cut(s) | 809 |
| TspDTI | ATGAA | 8 cut(s) | 281, 333, 645, 744, 1047, 1119, 1341, 1413 |
| TspGWI | ACGGA | 2 cut(s) | 456, 573 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 571 |
| VpaK11BI | GGWCC | 5 cut(s) | 169, 174, 480, 520, 797 |
| XapI | RAATTY | 3 cut(s) | 238, 1034, 1106 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 541 |
| XspI | CTAG | 3 cut(s) | 125, 281, 855 |