Rmu_sc0000853.1_g000035

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000853.1
Physical Location & Seq
Reverse (-)
116976 .. 122085
5110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000853.1_g000035.1.cds

Sequence Viewer

Length: 1443 bp
atgcaggcggcacccctccacctttcgagccttgctgagctgggcacggtggttgttgaggtgagtgagtggtcggggtcggtagaggaaagagagaggaagagaaccgtggtggtggcatcgctagaggtcgccggatggcttcagaatctccaagttgtcaaccgggtccggtccggcccatcaaagtctttctttctttctttcttgctggcagaaattagggttagagctgaaaattcagggggagacgacgacgaagcgatgaacccactaaccctagtgaagcggattcagaacatcaatgcgagagaagctcaattagggatttcagaggacgcttcatggcacgccaagtacaaagactccgcttacgtttacgccggcggcattccctttgatctcaccgaaggcgatctcctcgccatcttcgcacagtacggagaggtcgtcgatgtcaacctcgttcgcgataaagggaccgggaagtccaaagggttcgcctttgtggcgtatgaggaccagaggagtaccaatctcgctgtggataatttgaacggagcccaagtggtgggtcggactatcagggttgatcatgtggataagtacaagaagaaagaagaggaagatgaagaggaggagcagaggaagagggaggagcgtggtgtttgccgtgctttccagagaggtgaatgtactcgtggagctggatgtagattttctcacaatgaacagagagctgcaaacacagggtggggtgctgaggacaagaaatggggacacgaaaactatgatggtccgagaaagagtgacaaaagacctggcaccatcccctcaaatcgtgttccagagcctagagtgcgagaagatttcagcactaaagataagttcaagacagtaccggacaggagggccttggaggaagaaaagaggacatcaagaagacgtggtgaggatgatgagttggagccaagatcaagagaagattatgataggagggaagaaaagagaccgagaagacatgatgattatgaatttcagccgaaggcaagagaatatcatgatagaagggaagataggagacccagaaggcaaggcgacgatgaatttgaaccgaagctaaagtctgtagaagataagagacccagaaggcgtggtgatgatgctgcttatgagcccaagtccagagaagatcatgtcaggagtgaatatgatagaagagaagataggagaccaaaaagacgtgatgatgatttggaagctcatgacataagggaagatcgtgataagatggaagaaaagagatcaaggcgacccaatcatgatgaattagagccacagccacgagcaagtcgggataggagggaaggagagagattgagaaggcataatgatgatgaagtgcctccaaagtccagagaagttcgccaaaagggagattag

Protein Analysis

480

Amino Acids

56.17

Weight (kDa)

6.67

Isoelectric Point (pI)

65.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 487
AccB1I GGYRCC 2 cut(s) 10, 824
AccB7I CCANNNNNTGG 1 cut(s) 571
AccII CGCG 1 cut(s) 471
AciI CCGC 4 cut(s) 8, 289, 369, 387
AcsI RAATTY 3 cut(s) 238, 1034, 1106
AcuI CTGAAG 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 753
AfaI GTAC 6 cut(s) 359, 440, 532, 608, 697, 900
AfiI CCNNNNNNNGG 1 cut(s) 571
AgsI TTSAA 3 cut(s) 556, 892, 1112
AjiI CACGTC 2 cut(s) 947, 1244
AjnI CCWGG 1 cut(s) 820
AluBI AGCT 7 cut(s) 40, 233, 317, 707, 740, 1120, 1262
AluI AGCT 7 cut(s) 40, 233, 317, 707, 740, 1120, 1262
Alw26I GTCTC 5 cut(s) 243, 1003, 1075, 1135, 1225
AoxI GGCC 2 cut(s) 178, 912
ApeKI GCWGC 2 cut(s) 740, 1166
ApoI RAATTY 3 cut(s) 238, 1034, 1106
ArsI GACNNNNNNTTYG 4 cut(s) 1091, 1109, 1123, 1141
AspS9I GGNCC 7 cut(s) 169, 174, 179, 480, 520, 797, 912
AsuC2I CCSGG 2 cut(s) 167, 484
AsuHPI GGTGA 5 cut(s) 73, 397, 701, 962, 1169
AvaII GGWCC 5 cut(s) 169, 174, 480, 520, 797
BaeGI GKGCMC 1 cut(s) 47
BanI GGYRCC 2 cut(s) 10, 824
BanII GRGCYC 2 cut(s) 565, 1179
BauI CACGAG 2 cut(s) 699, 1344
BbsI GAAGAC 2 cut(s) 949, 1024
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 2 cut(s) 727, 1153
BccI CCATC 6 cut(s) 132, 190, 434, 788, 836, 1285
BceAI ACGGC 1 cut(s) 657
BciT130I CCWGG 1 cut(s) 822
BclI TGATCA 1 cut(s) 592
BcnI CCSGG 2 cut(s) 167, 484
BcoDI GTCTC 5 cut(s) 243, 1003, 1075, 1135, 1225
BfaI CTAG 3 cut(s) 125, 281, 855
BfmI CTRYAG 1 cut(s) 1128
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 4 cut(s) 9, 388, 741, 1167
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 4 cut(s) 10, 389, 742, 1168
Bme1390I CCNGG 3 cut(s) 167, 484, 822
Bme18I GGWCC 5 cut(s) 169, 174, 480, 520, 797
BmgBI CACGTC 2 cut(s) 947, 1244
BmgT120I GGNCC 7 cut(s) 169, 174, 179, 480, 520, 797, 912
BmiI GGNNCC 6 cut(s) 12, 170, 481, 562, 826, 969
BmrFI CCNGG 3 cut(s) 167, 484, 822
BmsI GCATC 2 cut(s) 128, 1153
BpiI GAAGAC 2 cut(s) 949, 1024
BplI GAGNNNNNCTC 2 cut(s) 301, 333
Bpu10I CCTNAGC 1 cut(s) 762
Bpu1102I GCTNAGC 1 cut(s) 36
BpuMI CCSGG 2 cut(s) 167, 484
BsaI GGTCTC 4 cut(s) 1003, 1075, 1135, 1225
BsaJI CCNNGG 2 cut(s) 108, 915
BsaWI WCCGGW 2 cut(s) 171, 901
BsaXI ACNNNNNCTCC 6 cut(s) 350, 380, 435, 465, 552, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse118I RCCGGY 1 cut(s) 383
BseBI CCWGG 1 cut(s) 822
BseDI CCNNGG 2 cut(s) 108, 915
BseGI GGATG 4 cut(s) 143, 716, 828, 961
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMII CTCAG 2 cut(s) 27, 753
BseRI GAGGAG 5 cut(s) 410, 541, 650, 653, 671
BseSI GKGCMC 1 cut(s) 47
BseXI GCAGC 2 cut(s) 727, 1153
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 2 cut(s) 180, 914
BshNI GGYRCC 2 cut(s) 10, 824
BsiSI CCGG 7 cut(s) 135, 166, 172, 177, 384, 483, 902
BslFI GGGAC 2 cut(s) 493, 792
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 5 cut(s) 243, 1003, 1075, 1135, 1225
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 2 cut(s) 493, 792
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 2 cut(s) 180, 914
Bso31I GGTCTC 4 cut(s) 1003, 1075, 1135, 1225
Bsp1286I GDGCHC 3 cut(s) 47, 565, 1179
Bsp143I GATC 7 cut(s) 400, 415, 592, 974, 1192, 1279, 1304
Bsp1720I GCTNAGC 1 cut(s) 36
Bsp68I TCGCGA 1 cut(s) 471
BspACI CCGC 4 cut(s) 8, 289, 369, 387
BspANI GGCC 2 cut(s) 180, 914
BspCNI CTCAG 2 cut(s) 28, 754
BspFNI CGCG 1 cut(s) 471
BspHI TCATGA 3 cut(s) 1060, 1264, 1321
BspLI GGNNCC 6 cut(s) 12, 170, 481, 562, 826, 969
BspT107I GGYRCC 2 cut(s) 10, 824
BspTNI GGTCTC 4 cut(s) 1003, 1075, 1135, 1225
BsrFI RCCGGY 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 108, 915
BssMI GATC 7 cut(s) 400, 415, 592, 974, 1192, 1279, 1304
BssSI CACGAG 2 cut(s) 699, 1344
BssT1I CCWWGG 1 cut(s) 915
Bst2BI CACGAG 2 cut(s) 699, 1344
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 4 cut(s) 49, 109, 438, 898
Bst6I CTCTTC 5 cut(s) 95, 615, 627, 644, 1213
BstC8I GCNNGC 4 cut(s) 6, 213, 351, 385
BstDEI CTNAG 2 cut(s) 36, 762
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 4 cut(s) 143, 716, 828, 961
BstFNI CGCG 1 cut(s) 471
BstKTI GATC 7 cut(s) 403, 418, 595, 977, 1195, 1282, 1307
BstMAI GTCTC 5 cut(s) 243, 1003, 1075, 1135, 1225
BstMBI GATC 7 cut(s) 400, 415, 592, 974, 1192, 1279, 1304
BstMWI GCNNNNNNNGC 4 cut(s) 314, 431, 509, 859
BstNI CCWGG 1 cut(s) 822
BstSCI CCNGG 3 cut(s) 165, 482, 820
BstSFI CTRYAG 1 cut(s) 1128
BstSLI GKGCMC 1 cut(s) 47
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 2 cut(s) 727, 1153
BstV2I GAAGAC 2 cut(s) 949, 1024
BsuRI GGCC 2 cut(s) 180, 914
BtgI CCRYGG 1 cut(s) 108
BtgZI GCGATG 2 cut(s) 105, 278
BtrI CACGTC 2 cut(s) 947, 1244
BtsCI GGATG 4 cut(s) 143, 716, 828, 961
BtuMI TCGCGA 1 cut(s) 471
Cac8I GCNNGC 4 cut(s) 6, 213, 351, 385
CciI TCATGA 3 cut(s) 1060, 1264, 1321
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 7 cut(s) 169, 174, 179, 480, 520, 797, 912
CpoI CGGWCCG 1 cut(s) 174
CseI GACGC 1 cut(s) 347
Csp6I GTAC 6 cut(s) 358, 439, 531, 607, 696, 899
CspI CGGWCCG 1 cut(s) 174
CviAII CATG 7 cut(s) 345, 596, 1022, 1061, 1196, 1265, 1322
CviQI GTAC 6 cut(s) 358, 439, 531, 607, 696, 899
DdeI CTNAG 2 cut(s) 36, 762
DpnI GATC 7 cut(s) 402, 417, 594, 976, 1194, 1281, 1306
DpnII GATC 7 cut(s) 400, 415, 592, 974, 1192, 1279, 1304
DraIII CACNNNGTG 1 cut(s) 753
DrdI GACNNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 487
Eam1104I CTCTTC 5 cut(s) 95, 615, 627, 644, 1213
EarI CTCTTC 5 cut(s) 95, 615, 627, 644, 1213
Eco130I CCWWGG 1 cut(s) 915
Eco24I GRGCYC 2 cut(s) 565, 1179
Eco31I GGTCTC 4 cut(s) 1003, 1075, 1135, 1225
Eco47I GGWCC 5 cut(s) 169, 174, 480, 520, 797
Eco57I CTGAAG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 912
EcoRII CCWGG 1 cut(s) 820
EcoT14I CCWWGG 1 cut(s) 915
EcoT38I GRGCYC 2 cut(s) 565, 1179
ErhI CCWWGG 1 cut(s) 915
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 7 cut(s) 348, 599, 1025, 1064, 1199, 1268, 1325
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 2 cut(s) 493, 792
FatI CATG 7 cut(s) 344, 595, 1021, 1060, 1195, 1264, 1321
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 4 cut(s) 9, 388, 741, 1167
FokI GGATG 4 cut(s) 150, 723, 815, 968
FriOI GRGCYC 2 cut(s) 565, 1179
Fsp4HI GCNGC 4 cut(s) 9, 388, 741, 1167
FspBI CTAG 3 cut(s) 125, 281, 855
GluI GCNGC 4 cut(s) 9, 388, 741, 1167
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 2 cut(s) 180, 914
HapII CCGG 7 cut(s) 135, 166, 172, 177, 384, 483, 902
HgaI GACGC 1 cut(s) 347
Hin1II CATG 7 cut(s) 348, 599, 1025, 1064, 1199, 1268, 1325
HincII GTYRAC 2 cut(s) 163, 460
HindII GTYRAC 2 cut(s) 163, 460
HinfI GANTC 3 cut(s) 148, 292, 365
HpaII CCGG 7 cut(s) 135, 166, 172, 177, 384, 483, 902
HphI GGTGA 5 cut(s) 73, 397, 701, 962, 1169
Hpy166II GTNNAC 3 cut(s) 163, 379, 460
Hpy188I TCNGA 5 cut(s) 147, 297, 334, 579, 801
Hpy8I GTNNAC 3 cut(s) 163, 379, 460
Hpy99I CGWCG 4 cut(s) 257, 260, 455, 1103
HpyAV CCTTC 7 cut(s) 404, 1039, 1062, 1083, 1143, 1361, 1377
HpyCH4III ACNGT 4 cut(s) 49, 109, 438, 898
HpyCH4IV ACGT 3 cut(s) 375, 946, 1243
HpyCH4V TGCA 2 cut(s) 4, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 431, 509, 859
HpyF3I CTNAG 2 cut(s) 36, 762
HpySE526I ACGT 3 cut(s) 375, 946, 1243
Hsp92II CATG 7 cut(s) 348, 599, 1025, 1064, 1199, 1268, 1325
KroI GCCGGC 1 cut(s) 383
KroNI GCCGGC 1 cut(s) 385
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 7 cut(s) 400, 415, 592, 974, 1192, 1279, 1304
LmnI GCTCC 5 cut(s) 560, 640, 658, 704, 967
Lsp1109I GCAGC 2 cut(s) 727, 1153
LweI GCATC 2 cut(s) 128, 1153
MaeI CTAG 3 cut(s) 125, 281, 855
MaeII ACGT 3 cut(s) 375, 946, 1243
MaeIII GTNAC 1 cut(s) 809
MalI GATC 7 cut(s) 402, 417, 594, 976, 1194, 1281, 1306
MboI GATC 7 cut(s) 400, 415, 592, 974, 1192, 1279, 1304
MhlI GDGCHC 3 cut(s) 47, 565, 1179
MluCI AATT 7 cut(s) 219, 238, 320, 550, 1034, 1106, 1328
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 557, 945
MreI CGCCGGCG 1 cut(s) 383
MroNI GCCGGC 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 1392
MspI CCGG 7 cut(s) 135, 166, 172, 177, 384, 483, 902
MspR9I CCNGG 3 cut(s) 167, 484, 822
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 1 cut(s) 822
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 4 cut(s) 314, 431, 509, 859
NaeI GCCGGC 1 cut(s) 385
NciI CCSGG 2 cut(s) 167, 484
NdeII GATC 7 cut(s) 400, 415, 592, 974, 1192, 1279, 1304
NgoMIV GCCGGC 1 cut(s) 383
NlaIII CATG 7 cut(s) 348, 599, 1025, 1064, 1199, 1268, 1325
NlaIV GGNNCC 6 cut(s) 12, 170, 481, 562, 826, 969
NmuCI GTSAC 1 cut(s) 809
NruI TCGCGA 1 cut(s) 471
PagI TCATGA 3 cut(s) 1060, 1264, 1321
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PctI GAATGC 1 cut(s) 390
PdiI GCCGGC 1 cut(s) 385
PfeI GAWTC 2 cut(s) 148, 292
PflMI CCANNNNNTGG 1 cut(s) 571
PkrI GCNGC 4 cut(s) 10, 389, 742, 1168
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 820
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 6 cut(s) 12, 170, 481, 562, 826, 969
PspPI GGNCC 7 cut(s) 169, 174, 179, 480, 520, 797, 912
RruI TCGCGA 1 cut(s) 471
RsaI GTAC 6 cut(s) 359, 440, 532, 608, 697, 900
RsaNI GTAC 6 cut(s) 358, 439, 531, 607, 696, 899
RseI CAYNNNNRTG 1 cut(s) 1392
Rsr2I CGGWCCG 1 cut(s) 174
RsrII CGGWCCG 1 cut(s) 174
SatI GCNGC 4 cut(s) 9, 388, 741, 1167
Sau3AI GATC 7 cut(s) 400, 415, 592, 974, 1192, 1279, 1304
Sau96I GGNCC 7 cut(s) 169, 174, 179, 480, 520, 797, 912
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 3 cut(s) 167, 484, 822
SduI GDGCHC 3 cut(s) 47, 565, 1179
SfaNI GCATC 2 cut(s) 128, 1153
SfcI CTRYAG 1 cut(s) 1128
SgrAI CRCCGGYG 1 cut(s) 383
SinI GGWCC 5 cut(s) 169, 174, 480, 520, 797
SmiMI CAYNNNNRTG 1 cut(s) 1392
Sse9I AATT 7 cut(s) 219, 238, 320, 550, 1034, 1106, 1328
SsiI CCGC 4 cut(s) 8, 289, 369, 387
SspMI CTAG 3 cut(s) 125, 281, 855
StyD4I CCNGG 3 cut(s) 165, 482, 820
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 4 cut(s) 49, 109, 438, 898
TaiI ACGT 3 cut(s) 378, 949, 1246
TaqI TCGA 2 cut(s) 26, 453
TaqII GACCGA 1 cut(s) 1027
TasI AATT 7 cut(s) 219, 238, 320, 550, 1034, 1106, 1328
TatI WGTACW 3 cut(s) 357, 606, 695
TauI GCSGC 2 cut(s) 11, 390
TfiI GAWTC 2 cut(s) 148, 292
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 2 cut(s) 740, 1166
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 8 cut(s) 281, 333, 645, 744, 1047, 1119, 1341, 1413
TspGWI ACGGA 2 cut(s) 456, 573
Van91I CCANNNNNTGG 1 cut(s) 571
VpaK11BI GGWCC 5 cut(s) 169, 174, 480, 520, 797
XapI RAATTY 3 cut(s) 238, 1034, 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XspI CTAG 3 cut(s) 125, 281, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.