pycom03g05820

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
4604115 .. 4605962
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05820.2

Sequence Viewer

Length: 1407 bp
ATGAACCCGCTAACCCTAGTGAAACGCATTCAGAACATCAATTCCAGAGAAGCCCAATTAGGGATTTCAGAGGAGGCGTCGTGGCACGCCAAGTACAAAGACTCCGCCTACGTCTACGTCGGCGGCATTCCCTTCGATCTCACAGAAGGCGATCTCCTCGCTGTTTTCGCACAATACGGAGAGATTGTGGATGTGAATCTTGTTCGCGATAAGGCGACTGGGAAATCCAAAGGGTTTGCGTTTGTGGCGTACGAGGACCAGAGGAGCACGATTCTTGCTGTGGATAATTTGAACGGAGCTCAAATTTTGGGGCGGACTATTAGGGTTGATCATGTGACCAAGTACAAGAAGAAGGAGGAGGAAGATGAAGAGGAGGCGCAGAGGAAGAGGGAGGAGCGGGGCGTTTGCCGGGCTTTCCAGAAAGGCGAATGTACACGCGGAGATTCGTGCAAGTTTTCACACAATGAGCAGAGAGCTGCAAACACAGGTTGGGGTGAAAAAGACCCGAAATGGGGGCGTGACAGTTATGAGGGCCCAAAAAGGGGTGAGAAAAGATCTAGTACCATTCCGCCAAATCGTGTTCCAGAGCCAAAAGGTCAAGAAGAGTTCAGATCAGGTGATAGAGAATTGGACTCCAGAAGAAAGGGCAACGGGAGGGACTTCGAAAGTCGCCCCAAGCAAGGTGATGGGAGAGAGCAAAAGAGACTGGGAAGACAGGGGGGTGATGATGAAAAGTTTGAGCCTAGATCAAGAGATCATGATAGGGGAGAAGAAAATAGATCAAGAAGATGGAGTGAGGATGCTGAATTGGGGCCCAATTCAAGAGAAATTTATGGCAGGAGAGAAGAACAGAGGTCGAGAAGGCACAATGATGATGAATTTCAGCCAAAGTCAAGAGAAGATTATGATAAAAGGGAAGATAAAAGACCCAGAGGGAGTGGTGGTGATCAGGAATTTGAGCCAAAGCTGAAATCTGGAGAAGATCACGATAGGAGGGGAGACGATAGAAGGGAAAATAAGAGACTAAGAAGGCATAGCGATGATGGTGAAATTGAGCCCAAATCTAAAGATGATCGTGGTAGGAGAGAAAATGATAGTAGGGAAGATAAGGGACTGAGAAGGCATGCTGGTGATGCTGATTTTGATCCAAAATCTAGAGACAATCATGATAGGATGGATGAAAAGAGATTAAGAAGGCACATCGATTATGAAAATCGGCCGAAGTCTAGAGAAGATTATGATAGGAGGGAAGATCAGAAGTCAAGAAGACGCAATGACAATGAATTTGATCTGAGGTCGAGAGCAGGCAAGGATAAGAGGGAAGGAGAGAGACTGAGAAGGGATGGAGATGATGAGATTCAGCCAAAGTCTAGACAAAGTCGTCATAGGAGTGAAAAGGGAGAGTGA

Protein Analysis

469

Amino Acids

55.04

Weight (kDa)

8.9

Isoelectric Point (pI)

77.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1380
AccBSI CCGCTC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 114
AccII CGCG 2 cut(s) 207, 438
AciI CCGC 7 cut(s) 8, 105, 123, 313, 397, 438, 569
AclWI GGATC 1 cut(s) 1139
AcoI YGGCCR 1 cut(s) 1217
AcsI RAATTY 5 cut(s) 303, 828, 878, 953, 1283
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 5 cut(s) 95, 251, 344, 433, 562
AfiI CCNNNNNNNGG 6 cut(s) 60, 511, 512, 541, 542, 680
AgsI TTSAA 2 cut(s) 292, 822
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 299, 476, 967
AluI AGCT 3 cut(s) 299, 476, 967
Alw21I GWGCWC 2 cut(s) 269, 301
Alw26I GTCTC 5 cut(s) 697, 993, 1015, 1152, 1324
AlwI GGATC 1 cut(s) 1139
AoxI GGCC 3 cut(s) 532, 812, 1217
ApaI GGGCCC 2 cut(s) 536, 816
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 5 cut(s) 303, 828, 878, 953, 1283
ArsI GACNNNNNNTTYG 2 cut(s) 1268, 1300
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 5 cut(s) 256, 532, 533, 812, 813
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 8 cut(s) 506, 557, 629, 695, 734, 956, 1058, 1142
AsuII TTCGAA 1 cut(s) 663
AvaII GGWCC 1 cut(s) 256
BaeGI GKGCMC 2 cut(s) 536, 816
BanII GRGCYC 4 cut(s) 301, 536, 816, 1059
BbsI GAAGAC 2 cut(s) 718, 1273
Bbv12I GWGCWC 2 cut(s) 269, 301
BbvI GCAGC 1 cut(s) 463
BccI CCATC 5 cut(s) 680, 783, 1037, 1168, 1337
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BclI TGATCA 2 cut(s) 328, 946
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 5 cut(s) 697, 993, 1015, 1152, 1324
BfaI CTAG 6 cut(s) 17, 558, 744, 1155, 1227, 1371
BglII AGATCT 1 cut(s) 554
BisI GCNGC 2 cut(s) 124, 477
BlsI GCNGC 2 cut(s) 125, 478
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 5 cut(s) 256, 532, 533, 812, 813
BmiI GGNNCC 3 cut(s) 534, 813, 814
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 2 cut(s) 228, 716
BmsI GCATC 2 cut(s) 790, 1123
BmuI ACTGGG 2 cut(s) 228, 716
BpiI GAAGAC 2 cut(s) 718, 1273
BpmI CTGGAG 2 cut(s) 619, 996
Bpu14I TTCGAA 1 cut(s) 663
BpuMI CCSGG 1 cut(s) 410
Bsa29I ATCGAT 1 cut(s) 1203
BsaBI GATNNNNATC 2 cut(s) 195, 1143
BsaHI GRCGYC 1 cut(s) 77
BsaXI ACNNNNNCTCC 8 cut(s) 65, 86, 95, 116, 171, 201, 928, 958
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 511, 512, 541, 542, 680
Bse1I ACTGG 2 cut(s) 223, 711
Bse3DI GCAATG 1 cut(s) 1279
Bse8I GATNNNNATC 2 cut(s) 195, 1143
BseCI ATCGAT 1 cut(s) 1203
BseGI GGATG 5 cut(s) 196, 805, 1179, 1183, 1348
BseJI GATNNNNATC 2 cut(s) 195, 1143
BseLI CCNNNNNNNGG 6 cut(s) 60, 511, 512, 541, 542, 680
BseMI GCAATG 1 cut(s) 1279
BseMII CTCAG 3 cut(s) 1106, 1283, 1325
BseNI ACTGG 2 cut(s) 223, 711
BseRI GAGGAG 6 cut(s) 86, 146, 277, 371, 386, 407
BseSI GKGCMC 2 cut(s) 536, 816
BseX3I CGGCCG 1 cut(s) 1217
BseXI GCAGC 1 cut(s) 463
Bsh1236I CGCG 2 cut(s) 207, 438
Bsh1285I CGRYCG 1 cut(s) 1220
BshFI GGCC 3 cut(s) 534, 814, 1219
BshVI ATCGAT 1 cut(s) 1203
BsiEI CGRYCG 1 cut(s) 1220
BsiHKAI GWGCWC 2 cut(s) 269, 301
BsiSI CCGG 1 cut(s) 409
BsiWI CGTACG 1 cut(s) 249
BslFI GGGAC 2 cut(s) 671, 1125
BslI CCNNNNNNNGG 6 cut(s) 60, 511, 512, 541, 542, 680
BsmAI GTCTC 5 cut(s) 697, 993, 1015, 1152, 1324
BsmBI CGTCTC 1 cut(s) 993
BsmFI GGGAC 2 cut(s) 671, 1125
BsmI GAATGC 2 cut(s) 27, 126
BsnI GGCC 3 cut(s) 534, 814, 1219
Bsp119I TTCGAA 1 cut(s) 663
Bsp120I GGGCCC 2 cut(s) 532, 812
Bsp1286I GDGCHC 5 cut(s) 269, 301, 536, 816, 1059
Bsp1407I TGTACA 1 cut(s) 431
Bsp68I TCGCGA 1 cut(s) 207
BspACI CCGC 7 cut(s) 8, 105, 123, 313, 397, 438, 569
BspANI GGCC 3 cut(s) 534, 814, 1219
BspCNI CTCAG 3 cut(s) 1107, 1284, 1326
BspDI ATCGAT 1 cut(s) 1203
BspFNI CGCG 2 cut(s) 207, 438
BspHI TCATGA 2 cut(s) 757, 1165
BspLI GGNNCC 3 cut(s) 534, 813, 814
BspPI GGATC 1 cut(s) 1139
BspT104I TTCGAA 1 cut(s) 663
BsrBI CCGCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 1279
BsrGI TGTACA 1 cut(s) 431
BsrI ACTGG 2 cut(s) 223, 711
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 3 cut(s) 363, 380, 597
BstACI GRCGYC 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 663
BstC8I GCNNGC 3 cut(s) 87, 1125, 1306
BstDEI CTNAG 4 cut(s) 1025, 1115, 1292, 1334
BstF5I GGATG 5 cut(s) 196, 805, 1179, 1183, 1348
BstFNI CGCG 2 cut(s) 207, 438
BstHHI GCGC 1 cut(s) 379
BstMAI GTCTC 5 cut(s) 697, 993, 1015, 1152, 1324
BstMCI CGRYCG 1 cut(s) 1220
BstMWI GCNNNNNNNGC 3 cut(s) 167, 245, 1133
BstNSI RCATGY 1 cut(s) 1127
BstSCI CCNGG 1 cut(s) 408
BstSLI GKGCMC 2 cut(s) 536, 816
BstUI CGCG 2 cut(s) 207, 438
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 2 cut(s) 718, 1273
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BstZI CGGCCG 1 cut(s) 1217
Bsu15I ATCGAT 1 cut(s) 1203
BsuRI GGCC 3 cut(s) 534, 814, 1219
BsuTUI ATCGAT 1 cut(s) 1203
BtgZI GCGATG 1 cut(s) 1053
BtsCI GGATG 5 cut(s) 196, 805, 1179, 1183, 1348
BtuMI TCGCGA 1 cut(s) 207
Cac8I GCNNGC 3 cut(s) 87, 1125, 1306
CciI TCATGA 2 cut(s) 757, 1165
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 5 cut(s) 256, 532, 533, 812, 813
ClaI ATCGAT 1 cut(s) 1203
CseI GACGC 2 cut(s) 66, 1278
Csp6I GTAC 5 cut(s) 94, 250, 343, 432, 561
CviAII CATG 4 cut(s) 332, 758, 1124, 1166
CviQI GTAC 5 cut(s) 94, 250, 343, 432, 561
DdeI CTNAG 4 cut(s) 1025, 1115, 1292, 1334
DrdI GACNNNNNNGTC 1 cut(s) 1380
DseDI GACNNNNNNGTC 1 cut(s) 1380
EaeI YGGCCR 1 cut(s) 1217
EagI CGGCCG 1 cut(s) 1217
Eam1104I CTCTTC 3 cut(s) 363, 380, 597
EarI CTCTTC 3 cut(s) 363, 380, 597
EciI GGCGGA 3 cut(s) 94, 328, 558
Ecl136II GAGCTC 1 cut(s) 299
EclXI CGGCCG 1 cut(s) 1217
Eco24I GRGCYC 4 cut(s) 301, 536, 816, 1059
Eco47I GGWCC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 1217
Eco53kI GAGCTC 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 532, 812
EcoT38I GRGCYC 4 cut(s) 301, 536, 816, 1059
Esp3I CGTCTC 1 cut(s) 993
FaeI CATG 4 cut(s) 335, 761, 1127, 1169
FaqI GGGAC 2 cut(s) 671, 1125
FatI CATG 4 cut(s) 331, 757, 1123, 1165
FauI CCCGC 2 cut(s) 15, 390
FbaI TGATCA 2 cut(s) 328, 946
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 124, 477
FokI GGATG 5 cut(s) 203, 812, 1186, 1190, 1355
FriOI GRGCYC 4 cut(s) 301, 536, 816, 1059
Fsp4HI GCNGC 2 cut(s) 124, 477
FspBI CTAG 6 cut(s) 17, 558, 744, 1155, 1227, 1371
GlaI GCGC 1 cut(s) 378
GluI GCNGC 2 cut(s) 124, 477
GsuI CTGGAG 2 cut(s) 619, 996
HaeIII GGCC 3 cut(s) 534, 814, 1219
HapII CCGG 1 cut(s) 409
HgaI GACGC 2 cut(s) 66, 1278
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 4 cut(s) 335, 761, 1127, 1169
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 6 cut(s) 101, 196, 271, 443, 632, 1357
HpaII CCGG 1 cut(s) 409
HphI GGTGA 8 cut(s) 506, 557, 629, 695, 734, 956, 1058, 1142
Hpy166II GTNNAC 2 cut(s) 115, 434
Hpy188I TCNGA 5 cut(s) 33, 70, 611, 1257, 1293
Hpy8I GTNNAC 2 cut(s) 115, 434
Hpy99I CGWCG 2 cut(s) 82, 122
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 2 cut(s) 111, 117
HpyCH4V TGCA 2 cut(s) 450, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 245, 1133
HpyF3I CTNAG 4 cut(s) 1025, 1115, 1292, 1334
HpySE526I ACGT 2 cut(s) 111, 117
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 4 cut(s) 335, 761, 1127, 1169
HspAI GCGC 1 cut(s) 377
Ksp22I TGATCA 2 cut(s) 328, 946
LmnI GCTCC 3 cut(s) 264, 296, 394
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 2 cut(s) 790, 1123
MaeI CTAG 6 cut(s) 17, 558, 744, 1155, 1227, 1371
MaeII ACGT 2 cut(s) 111, 117
MaeIII GTNAC 2 cut(s) 334, 518
MbiI CCGCTC 1 cut(s) 397
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 5 cut(s) 269, 301, 536, 816, 1059
MlyI GAGTC 2 cut(s) 95, 626
MseI TTAA 1 cut(s) 1190
MslI CAYNNNNRTG 4 cut(s) 870, 1038, 1128, 1389
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 410
Mva1269I GAATGC 2 cut(s) 27, 126
MvnI CGCG 2 cut(s) 207, 438
MwoI GCNNNNNNNGC 3 cut(s) 167, 245, 1133
NciI CCSGG 1 cut(s) 410
NlaIII CATG 4 cut(s) 335, 761, 1127, 1169
NlaIV GGNNCC 3 cut(s) 534, 813, 814
NmuCI GTSAC 2 cut(s) 334, 518
NruI TCGCGA 1 cut(s) 207
NspI RCATGY 1 cut(s) 1127
NspV TTCGAA 1 cut(s) 663
PaeI GCATGC 1 cut(s) 1127
PagI TCATGA 2 cut(s) 757, 1165
PctI GAATGC 2 cut(s) 27, 126
PfeI GAWTC 4 cut(s) 196, 271, 443, 1357
Pfl23II CGTACG 1 cut(s) 249
PflFI GACNNNGTC 1 cut(s) 1377
PkrI GCNGC 2 cut(s) 125, 478
PleI GAGTC 2 cut(s) 95, 626
PpsI GAGTC 2 cut(s) 95, 626
Psp124BI GAGCTC 1 cut(s) 301
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 534, 813, 814
PspOMI GGGCCC 2 cut(s) 532, 812
PspPI GGNCC 5 cut(s) 256, 532, 533, 812, 813
PsuI RGATCY 1 cut(s) 554
PsyI GACNNNGTC 1 cut(s) 1377
RruI TCGCGA 1 cut(s) 207
RsaI GTAC 5 cut(s) 95, 251, 344, 433, 562
RsaNI GTAC 5 cut(s) 94, 250, 343, 432, 561
RseI CAYNNNNRTG 4 cut(s) 870, 1038, 1128, 1389
SacI GAGCTC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 1190
SatI GCNGC 2 cut(s) 124, 477
Sau96I GGNCC 5 cut(s) 256, 532, 533, 812, 813
SchI GAGTC 2 cut(s) 95, 626
ScrFI CCNGG 1 cut(s) 410
SduI GDGCHC 5 cut(s) 269, 301, 536, 816, 1059
SfaNI GCATC 2 cut(s) 790, 1123
SfuI TTCGAA 1 cut(s) 663
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 4 cut(s) 870, 1038, 1128, 1389
SphI GCATGC 1 cut(s) 1127
SsiI CCGC 7 cut(s) 8, 105, 123, 313, 397, 438, 569
SspMI CTAG 6 cut(s) 17, 558, 744, 1155, 1227, 1371
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 2 cut(s) 114, 120
TaqI TCGA 5 cut(s) 135, 663, 857, 1203, 1298
TatI WGTACW 3 cut(s) 93, 342, 431
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 4 cut(s) 196, 271, 443, 1357
Tru1I TTAA 1 cut(s) 1190
Tru9I TTAA 1 cut(s) 1190
TseFI GTSAC 2 cut(s) 334, 518
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 2 cut(s) 334, 518
TspDTI ATGAA 7 cut(s) 17, 381, 744, 891, 1194, 1224, 1296
TspGWI ACGGA 2 cut(s) 192, 309
Tth111I GACNNNGTC 1 cut(s) 1377
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 5 cut(s) 303, 828, 878, 953, 1283
XbaI TCTAGA 3 cut(s) 1154, 1226, 1370
XceI RCATGY 1 cut(s) 1127
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 6 cut(s) 17, 558, 744, 1155, 1227, 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.