Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008422

Physical Location & Seq

Genomic Coordinates Reverse (-)

75108313 .. 75110625

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG472000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAACCCACTAACCCTAGTGAAGCGGATTCAGAACATCAATGCGAGAGAAGCTCAATTAGGGATTTCAGAGGACGCTTCATGGCACGCCAAGTACAAAGACTCCGCTTACGTTTACGCCGGCGGCATTCCCTTTGATCTCACCGAAGGCGATCTCCTCGCCATCTTCGCACAGTACGGAGAGGTCGTCGATGTCAACCTCGTTCGCGATAAAGGGACCGGGAAATCCAAAGGGTTCGCCTTTGTTGCGTATGAGGACCAGAGGAGTACCAATCTCGCTGTGGATAATTTGAACGGAGCCCAAGTGGTGGGTCGGACTATCAGGGTTGATCATGTGGATAAGTACAAGAAGAAAGAAGAGGAAGATGAAGAGGAGGAGCAGAGGAAGAGGGAGGAGCGTGGTGTTTGCCGTGCTTTCCAGAGAGGTGAATGTACTCGTGGAGCTGGATGTAGATTTTCTCACAATGAACAGAGAGCTGCAAACACAGGGTGGGGTGCTGAGGACAAGAAATGGGGACACGAAAACTATGATGGTCCGAGAAAGAGTGACAAAAGACCTGGCACCATCCCCTCAAATCGTGTTCCAGAGCCTAGAGTGCGAGAAGATTTCAGCACTAAAGATAAGTTCAAGACAGTACCGGACAGGAGGGCCCTGGAGGAAGAAAAGAGGACATCAAGAAGACGTGGTGAGGATGATGAGTTGGAGCCAAGATCAAGAGAAGATTATGATAGGAGGGAAGAAAAGAGACCAAGAAGACATGATGATTATGAATTTCAGCCGAAGGCAAGAGAATATCATGATAGAAGGGAAGATAGGAGACCCAGAAGGCAAGGCGACGATGAATTTGAACCGAAGCTAAAGTCTGTAGAAGATAAGAGACCCAGAAGGCGTGGTGATGATGCTGCATATGAGCCCAAGTCTAGAGAAGATCATGTCAGGAGTGAATATGATAGAAGAGAAGATAGGAGACCAAAAAGACGTGATGATGATTTGGAAGCTCATGACATAAGGGAAGATCGTGATAAGATGGAAGAAAAGAGATCAAGGCGACCCAATCATGATGAATTAGAGCCACAACCACGAGCAAGTCGGGATAGGAGGGAAGGAGAGAGATTGAGAAGGCATCATGATGATGAAGTGCCTCCAAAGTCCAGAGAAGTTCGCCAAAAGGGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070274 GO:0070727 GO:0071011 GO:0071013 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

392

Amino Acids

46.6

Weight (kDa)

8.22

Isoelectric Point (pI)

70.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	38 - 108	6.5e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47120 AT3G47120 AT5G58790
fragaria_vesca	FvH4_3g38440
malus_domestica	MD03G1072000.v1.1 MD11G1076000.v1.1
prunus_persica	Prupe.6G058600_v2.0.a1 Prupe.6G058600_v2.0.a1
pyrus_communis	pycom03g05820 pycom11g06370
rosa_chinensis	RchiOBHm_Chr5g0069091
rosa_laevigata	RLG00000036037
rosa_multiflora	Rmu_sc0000853.1_g000035 Rmu_sc0000936.1_g000010
rosa_roxburghii	Rroxscaffold_1G00011660
rosa_rugosa	Rorug05G0396200 Rorug05G0396200
rosa_samantha	Rh5AG453000 Rh5BG472000 Rh5CG494400 Rh5DG484500
rosa_wichuraiana	Rw0G006060 Rw5G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	25, 105, 123
AcsI	RAATTY	2 cut(s)	770, 842
AdeI	CACNNNGTG	1 cut(s)	489
AfaI	GTAC	6 cut(s)	95, 176, 268, 344, 433, 636
AfiI	CCNNNNNNNGG	2 cut(s)	307, 1171
AgsI	TTSAA	3 cut(s)	292, 628, 848
AjiI	CACGTC	2 cut(s)	683, 980
AjnI	CCWGG	2 cut(s)	556, 651
AluBI	AGCT	5 cut(s)	53, 443, 476, 856, 998
AluI	AGCT	5 cut(s)	53, 443, 476, 856, 998
Alw26I	GTCTC	4 cut(s)	739, 811, 871, 961
AoxI	GGCC	1 cut(s)	648
ApaI	GGGCCC	1 cut(s)	652
ApeKI	GCWGC	2 cut(s)	476, 902
ApoI	RAATTY	2 cut(s)	770, 842
ArsI	GACNNNNNNTTYG	4 cut(s)	827, 845, 859, 877
AspS9I	GGNCC	5 cut(s)	216, 256, 533, 648, 649
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	4 cut(s)	133, 437, 698, 905
AvaII	GGWCC	3 cut(s)	216, 256, 533
BaeGI	GKGCMC	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	3 cut(s)	301, 652, 915
BauI	CACGAG	2 cut(s)	435, 1080
BbsI	GAAGAC	2 cut(s)	685, 760
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	463, 889
BccI	CCATC	4 cut(s)	170, 524, 572, 1021
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	2 cut(s)	558, 653
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	4 cut(s)	739, 811, 871, 961
BfaI	CTAG	3 cut(s)	17, 591, 921
BfmI	CTRYAG	1 cut(s)	864
BisI	GCNGC	3 cut(s)	124, 477, 903
BlsI	GCNGC	3 cut(s)	125, 478, 904
Bme1390I	CCNGG	3 cut(s)	220, 558, 653
Bme18I	GGWCC	3 cut(s)	216, 256, 533
BmgBI	CACGTC	2 cut(s)	683, 980
BmgT120I	GGNCC	5 cut(s)	216, 256, 533, 648, 649
BmiI	GGNNCC	5 cut(s)	217, 298, 562, 650, 705
BmrFI	CCNGG	3 cut(s)	220, 558, 653
BmsI	GCATC	2 cut(s)	889, 1132
BpiI	GAAGAC	2 cut(s)	685, 760
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	674
Bpu10I	CCTNAGC	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	220
BsaI	GGTCTC	4 cut(s)	739, 811, 871, 961
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	637
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 171, 201, 288, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 1171
Bse118I	RCCGGY	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	558, 653
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	3 cut(s)	452, 564, 697
BseLI	CCNNNNNNNGG	2 cut(s)	307, 1171
BseMII	CTCAG	1 cut(s)	489
BseRI	GAGGAG	5 cut(s)	146, 277, 386, 389, 407
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	2 cut(s)	463, 889
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	650
BshNI	GGYRCC	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	120, 219, 638
BslFI	GGGAC	2 cut(s)	229, 528
BslI	CCNNNNNNNGG	2 cut(s)	307, 1171
BsmAI	GTCTC	4 cut(s)	739, 811, 871, 961
BsmFI	GGGAC	2 cut(s)	229, 528
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	650
Bso31I	GGTCTC	4 cut(s)	739, 811, 871, 961
Bsp120I	GGGCCC	1 cut(s)	648
Bsp1286I	GDGCHC	3 cut(s)	301, 652, 915
Bsp143I	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	3 cut(s)	25, 105, 123
BspANI	GGCC	1 cut(s)	650
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	4 cut(s)	796, 1000, 1057, 1126
BspLI	GGNNCC	5 cut(s)	217, 298, 562, 650, 705
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	4 cut(s)	739, 811, 871, 961
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
BssSI	CACGAG	2 cut(s)	435, 1080
Bst2BI	CACGAG	2 cut(s)	435, 1080
Bst2UI	CCWGG	2 cut(s)	558, 653
Bst4CI	ACNGT	2 cut(s)	174, 634
Bst6I	CTCTTC	4 cut(s)	351, 363, 380, 949
BstC8I	GCNNGC	2 cut(s)	87, 121
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	3 cut(s)	452, 564, 697
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	7 cut(s)	139, 154, 331, 713, 931, 1018, 1043
BstMAI	GTCTC	4 cut(s)	739, 811, 871, 961
BstMBI	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 167, 245, 595
BstNI	CCWGG	2 cut(s)	558, 653
BstSCI	CCNGG	3 cut(s)	218, 556, 651
BstSFI	CTRYAG	1 cut(s)	864
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	463, 889
BstV2I	GAAGAC	2 cut(s)	685, 760
BsuRI	GGCC	1 cut(s)	650
BtrI	CACGTC	2 cut(s)	683, 980
BtsCI	GGATG	3 cut(s)	452, 564, 697
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	87, 121
CciI	TCATGA	4 cut(s)	796, 1000, 1057, 1126
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	5 cut(s)	216, 256, 533, 648, 649
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	6 cut(s)	94, 175, 267, 343, 432, 635
CviAII	CATG	8 cut(s)	81, 332, 758, 797, 932, 1001, 1058, 1127
CviQI	GTAC	6 cut(s)	94, 175, 267, 343, 432, 635
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	7 cut(s)	138, 153, 330, 712, 930, 1017, 1042
DpnII	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
DraIII	CACNNNGTG	1 cut(s)	489
Eam1104I	CTCTTC	4 cut(s)	351, 363, 380, 949
EarI	CTCTTC	4 cut(s)	351, 363, 380, 949
Eco24I	GRGCYC	3 cut(s)	301, 652, 915
Eco31I	GGTCTC	4 cut(s)	739, 811, 871, 961
Eco47I	GGWCC	3 cut(s)	216, 256, 533
EcoO109I	RGGNCCY	2 cut(s)	648, 649
EcoRII	CCWGG	2 cut(s)	556, 651
EcoT38I	GRGCYC	3 cut(s)	301, 652, 915
FaeI	CATG	8 cut(s)	84, 335, 761, 800, 935, 1004, 1061, 1130
FaqI	GGGAC	2 cut(s)	229, 528
FatI	CATG	8 cut(s)	80, 331, 757, 796, 931, 1000, 1057, 1126
FauNDI	CATATG	1 cut(s)	907
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	124, 477, 903
FokI	GGATG	3 cut(s)	459, 551, 704
FriOI	GRGCYC	3 cut(s)	301, 652, 915
Fsp4HI	GCNGC	3 cut(s)	124, 477, 903
FspBI	CTAG	3 cut(s)	17, 591, 921
GluI	GCNGC	3 cut(s)	124, 477, 903
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	3 cut(s)	120, 219, 638
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	8 cut(s)	84, 335, 761, 800, 935, 1004, 1061, 1130
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	28, 101
HpaII	CCGG	3 cut(s)	120, 219, 638
HphI	GGTGA	4 cut(s)	133, 437, 698, 905
Hpy166II	GTNNAC	2 cut(s)	115, 196
Hpy188I	TCNGA	4 cut(s)	33, 70, 315, 537
Hpy8I	GTNNAC	2 cut(s)	115, 196
Hpy99I	CGWCG	2 cut(s)	191, 839
HpyAV	CCTTC	7 cut(s)	140, 775, 798, 819, 879, 1097, 1113
HpyCH4III	ACNGT	2 cut(s)	174, 634
HpyCH4IV	ACGT	3 cut(s)	111, 682, 979
HpyCH4V	TGCA	2 cut(s)	479, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 167, 245, 595
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	3 cut(s)	111, 682, 979
Hsp92II	CATG	8 cut(s)	84, 335, 761, 800, 935, 1004, 1061, 1130
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
LmnI	GCTCC	5 cut(s)	296, 376, 394, 440, 703
Lsp1109I	GCAGC	2 cut(s)	463, 889
LweI	GCATC	2 cut(s)	889, 1132
MaeI	CTAG	3 cut(s)	17, 591, 921
MaeII	ACGT	3 cut(s)	111, 682, 979
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	7 cut(s)	138, 153, 330, 712, 930, 1017, 1042
MboI	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
MhlI	GDGCHC	3 cut(s)	301, 652, 915
MluCI	AATT	5 cut(s)	56, 286, 770, 842, 1064
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	293, 681
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	1128, 1131
MspI	CCGG	3 cut(s)	120, 219, 638
MspR9I	CCNGG	3 cut(s)	220, 558, 653
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	2 cut(s)	558, 653
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	50, 167, 245, 595
NaeI	GCCGGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	8 cut(s)	84, 335, 761, 800, 935, 1004, 1061, 1130
NlaIV	GGNNCC	5 cut(s)	217, 298, 562, 650, 705
NmuCI	GTSAC	1 cut(s)	545
NruI	TCGCGA	1 cut(s)	207
PagI	TCATGA	4 cut(s)	796, 1000, 1057, 1126
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	125, 478, 904
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	556, 651
PspGI	CCWGG	2 cut(s)	556, 651
PspN4I	GGNNCC	5 cut(s)	217, 298, 562, 650, 705
PspOMI	GGGCCC	1 cut(s)	648
PspPI	GGNCC	5 cut(s)	216, 256, 533, 648, 649
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	6 cut(s)	95, 176, 268, 344, 433, 636
RsaNI	GTAC	6 cut(s)	94, 175, 267, 343, 432, 635
RseI	CAYNNNNRTG	2 cut(s)	1128, 1131
SatI	GCNGC	3 cut(s)	124, 477, 903
Sau3AI	GATC	7 cut(s)	136, 151, 328, 710, 928, 1015, 1040
Sau96I	GGNCC	5 cut(s)	216, 256, 533, 648, 649
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	220, 558, 653
SduI	GDGCHC	3 cut(s)	301, 652, 915
SfaNI	GCATC	2 cut(s)	889, 1132
SfcI	CTRYAG	1 cut(s)	864
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	3 cut(s)	216, 256, 533
SmiMI	CAYNNNNRTG	2 cut(s)	1128, 1131
Sse9I	AATT	5 cut(s)	56, 286, 770, 842, 1064
SsiI	CCGC	3 cut(s)	25, 105, 123
SspMI	CTAG	3 cut(s)	17, 591, 921
StyD4I	CCNGG	3 cut(s)	218, 556, 651
TaaI	ACNGT	2 cut(s)	174, 634
TaiI	ACGT	3 cut(s)	114, 685, 982
TaqI	TCGA	1 cut(s)	189
TasI	AATT	5 cut(s)	56, 286, 770, 842, 1064
TatI	WGTACW	3 cut(s)	93, 342, 431
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	476, 902
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	8 cut(s)	17, 69, 381, 480, 783, 855, 1077, 1149
TspGWI	ACGGA	2 cut(s)	192, 309
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	216, 256, 533
XapI	RAATTY	2 cut(s)	770, 842
XbaI	TCTAGA	1 cut(s)	920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	3 cut(s)	17, 591, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.