MD11G1076000.v1.1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
6463670 .. 6467467
3798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1076000.v1.1.491

Sequence Viewer

Length: 1230 bp
ATGAATCCGCTAACCCTAGTGAAACGCATTCAGAACATCAATTCCAGAGAAGCCCAATTAGGGATTTCGGAGGAGGCTTCGTGGCACGCCAAGTACAAAGACTCCGCCTACGTCTACGTCGGCGGCGTTCCCTTCGATCTCACCGAAGGCGATCTCCTCGCCGTTTTCGCACAATACGGTGAGATCGTGGATGTGAATCTTGTTCGCGATAAGGCGACTGGGAAATCCAAGGCGTTTGCGTTTGTGGCGTACGAGGACCAGAGGAGCACTATTCTTTCTGTGGATAATTTGAACGGAGCTCAAATTTTAGGGCGGACAATTAGGGTTGATCATGTGACTAAGTACAAGAAGAAGGAGGAGGAAGATGAAGAGGAGGCGCAGCGGAAGAGGGAGGAGCGGGGTGTTTGCCGGGCTTTCCAGAAAGGCGAATGCACTCGTGGAGATTCGTGCAAGTTTTCGCACAATGAGCAAAGAGCTGCAAACACAGGTTGGGGTGAAAAAGACCCAAAATGGGGGCGTGACAGTTATGAGGGCCCAAAAAGGGGTGATAAAAGATCTAGCTTCATTCCGCCAAATCGTGTTCCAGGGCCAAAAGTTCAGGAAGAGTTCAGATCAGGGGGTAGGGACTTCGAAAGTCACACCAAGCGAAGTGATGGGAGGGAGCAAAAGAGACTGGGTATACAGGGGGGTGATGATGAAAAGTTTAAGCCTAGATCAAGAGATCATGATAGGGAGGAAGAAAATAGATCAAGAAGACGGAGTGAGGATGATGAATCGGGGCCCAATTCAAGAGAACGTTATGGTAGGAGAGAAGAACAGAGATCGAGAAGGCACAATGATGATGAGTTTCAGCCGAAGTCAAGAGAAGATTATGATAGAAAGAATGATAAAAGAGCCCAAAGGTGTGGTGATGATGAGGAACTTGAGCCAAAGCTAAATTCTAGAGAAGATCATGATAGGAGGGGAGATGATAGAAGGGAAAATAAGAAACTGAGAAGGCATAGCGATGATGGTGAATTTGAGCCCAAATCTCGTGGTAGGAGGGAAGATGATAGTAGGGAAGATAAGGAACTGAGAAGGCATGCTGGTGATGCTGATTTTGATCCAAAATCTAGAGACAATCATGATAGGATGGATGAAAAGAGATTGAGAAGGCACAGTGGTTATGAAAATCGTCCAAAGTCCAGAGAAGATTATGATAGGAGGGAAGAACAGAGGCAATGCCGATGA

Protein Analysis

410

Amino Acids

48.26

Weight (kDa)

8.4

Isoelectric Point (pI)

71.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 38 - 108 2.1e-19 RNA recognition motif
zf-CCCH PF00642 134 - 155 4.5e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 135 - 155 3.2e-07 CCCH-type zinc finger
zf_CCCH_4 PF18345 136 - 154 3e-06 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 397
AccI GTMKAC 2 cut(s) 114, 679
AccII CGCG 1 cut(s) 207
AciI CCGC 7 cut(s) 8, 105, 123, 313, 382, 397, 569
AclI AACGTT 1 cut(s) 796
AclWI GGATC 1 cut(s) 1097
AcsI RAATTY 3 cut(s) 303, 937, 1016
AfaI GTAC 3 cut(s) 95, 251, 344
AfiI CCNNNNNNNGG 5 cut(s) 60, 511, 512, 541, 542
AgsI TTSAA 2 cut(s) 292, 789
AjnI CCWGG 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 922, 954
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 4 cut(s) 299, 476, 561, 934
AluI AGCT 4 cut(s) 299, 476, 561, 934
Alw21I GWGCWC 2 cut(s) 269, 301
Alw26I GTCTC 2 cut(s) 664, 1110
AlwI GGATC 1 cut(s) 1097
AoxI GGCC 3 cut(s) 532, 587, 779
ApaI GGGCCC 2 cut(s) 536, 783
ApeKI GCWGC 2 cut(s) 379, 476
ApoI RAATTY 3 cut(s) 303, 937, 1016
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 6 cut(s) 256, 532, 533, 587, 779, 780
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 8 cut(s) 133, 191, 506, 557, 701, 920, 1025, 1100
AsuII TTCGAA 1 cut(s) 630
AvaII GGWCC 1 cut(s) 256
BaeGI GKGCMC 2 cut(s) 536, 783
BanII GRGCYC 5 cut(s) 301, 536, 783, 898, 1026
BauI CACGAG 2 cut(s) 435, 1032
BbsI GAAGAC 1 cut(s) 760
Bbv12I GWGCWC 2 cut(s) 269, 301
BbvI GCAGC 2 cut(s) 391, 463
BccI CCATC 3 cut(s) 647, 1004, 1126
BceAI ACGGC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 585
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 664, 1110
BfaI CTAG 5 cut(s) 17, 558, 711, 942, 1113
BglII AGATCT 1 cut(s) 554
BisI GCNGC 3 cut(s) 124, 380, 477
BlsI GCNGC 3 cut(s) 125, 381, 478
Bme1390I CCNGG 2 cut(s) 410, 585
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 6 cut(s) 256, 532, 533, 587, 779, 780
BmiI GGNNCC 3 cut(s) 534, 780, 781
BmrFI CCNGG 2 cut(s) 410, 585
BmrI ACTGGG 2 cut(s) 228, 683
BmsI GCATC 1 cut(s) 1081
BmuI ACTGGG 2 cut(s) 228, 683
BpiI GAAGAC 1 cut(s) 760
Bpu14I TTCGAA 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 944
BpuMI CCSGG 1 cut(s) 410
BsaBI GATNNNNATC 2 cut(s) 195, 1101
BsaJI CCNNGG 2 cut(s) 228, 584
BsaXI ACNNNNNCTCC 4 cut(s) 65, 86, 95, 116
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 511, 512, 541, 542
Bse1I ACTGG 2 cut(s) 223, 678
Bse3DI GCAATG 1 cut(s) 1226
Bse8I GATNNNNATC 2 cut(s) 195, 1101
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 2 cut(s) 228, 584
BseGI GGATG 4 cut(s) 196, 772, 1137, 1141
BseJI GATNNNNATC 2 cut(s) 195, 1101
BseLI CCNNNNNNNGG 5 cut(s) 60, 511, 512, 541, 542
BseMI GCAATG 1 cut(s) 1226
BseMII CTCAG 2 cut(s) 983, 1064
BseNI ACTGG 2 cut(s) 223, 678
BseRI GAGGAG 6 cut(s) 86, 146, 277, 371, 386, 407
BseSI GKGCMC 2 cut(s) 536, 783
BseXI GCAGC 2 cut(s) 391, 463
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 534, 589, 781
BsiHKAI GWGCWC 2 cut(s) 269, 301
BsiSI CCGG 1 cut(s) 409
BsiWI CGTACG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 5 cut(s) 60, 511, 512, 541, 542
BsmAI GTCTC 2 cut(s) 664, 1110
BsmFI GGGAC 1 cut(s) 638
BsmI GAATGC 2 cut(s) 27, 434
BsnI GGCC 3 cut(s) 534, 589, 781
Bsp119I TTCGAA 1 cut(s) 630
Bsp120I GGGCCC 2 cut(s) 532, 779
Bsp1286I GDGCHC 6 cut(s) 269, 301, 536, 783, 898, 1026
Bsp68I TCGCGA 1 cut(s) 207
BspACI CCGC 7 cut(s) 8, 105, 123, 313, 382, 397, 569
BspANI GGCC 3 cut(s) 534, 589, 781
BspCNI CTCAG 2 cut(s) 984, 1065
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 3 cut(s) 724, 952, 1123
BspLI GGNNCC 3 cut(s) 534, 780, 781
BspPI GGATC 1 cut(s) 1097
BspT104I TTCGAA 1 cut(s) 630
BsrBI CCGCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 1226
BsrI ACTGG 2 cut(s) 223, 678
BssECI CCNNGG 2 cut(s) 228, 584
BssNAI GTATAC 1 cut(s) 680
BssSI CACGAG 2 cut(s) 435, 1032
BssT1I CCWWGG 1 cut(s) 228
Bst1107I GTATAC 1 cut(s) 680
Bst2BI CACGAG 2 cut(s) 435, 1032
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 179, 524, 1160
Bst6I CTCTTC 3 cut(s) 363, 380, 597
BstBI TTCGAA 1 cut(s) 630
BstC8I GCNNGC 2 cut(s) 87, 1083
BstDEI CTNAG 3 cut(s) 339, 992, 1073
BstF5I GGATG 4 cut(s) 196, 772, 1137, 1141
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 379
BstMAI GTCTC 2 cut(s) 664, 1110
BstMWI GCNNNNNNNGC 4 cut(s) 167, 245, 466, 1091
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 1 cut(s) 1085
BstSCI CCNGG 2 cut(s) 408, 583
BstSLI GKGCMC 2 cut(s) 536, 783
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 391, 463
BstV2I GAAGAC 1 cut(s) 760
BstX2I RGATCY 1 cut(s) 554
BstXI CCANNNNNNTGG 1 cut(s) 905
BstYI RGATCY 1 cut(s) 554
BstZ17I GTATAC 1 cut(s) 680
BsuRI GGCC 3 cut(s) 534, 589, 781
BtgZI GCGATG 1 cut(s) 1020
BtsCI GGATG 4 cut(s) 196, 772, 1137, 1141
BtsIMutI CAGTG 1 cut(s) 1165
BtuMI TCGCGA 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 87, 1083
CciI TCATGA 3 cut(s) 724, 952, 1123
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 6 cut(s) 256, 532, 533, 587, 779, 780
Csp6I GTAC 3 cut(s) 94, 250, 343
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviAII CATG 5 cut(s) 332, 725, 953, 1082, 1124
CviQI GTAC 3 cut(s) 94, 250, 343
DdeI CTNAG 3 cut(s) 339, 992, 1073
Eam1104I CTCTTC 3 cut(s) 363, 380, 597
EarI CTCTTC 3 cut(s) 363, 380, 597
EciI GGCGGA 3 cut(s) 94, 328, 558
Ecl136II GAGCTC 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 5 cut(s) 301, 536, 783, 898, 1026
Eco47I GGWCC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 532, 779
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 5 cut(s) 301, 536, 783, 898, 1026
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 5 cut(s) 335, 728, 956, 1085, 1127
FaqI GGGAC 1 cut(s) 638
FatI CATG 5 cut(s) 331, 724, 952, 1081, 1123
FauI CCCGC 1 cut(s) 390
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 2 cut(s) 114, 679
Fnu4HI GCNGC 3 cut(s) 124, 380, 477
FokI GGATG 4 cut(s) 203, 779, 1144, 1148
FriOI GRGCYC 5 cut(s) 301, 536, 783, 898, 1026
Fsp4HI GCNGC 3 cut(s) 124, 380, 477
FspBI CTAG 5 cut(s) 17, 558, 711, 942, 1113
GlaI GCGC 1 cut(s) 378
GluI GCNGC 3 cut(s) 124, 380, 477
HaeIII GGCC 3 cut(s) 534, 589, 781
HapII CCGG 1 cut(s) 409
HhaI GCGC 1 cut(s) 379
Hin1II CATG 5 cut(s) 335, 728, 956, 1085, 1127
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 5 cut(s) 4, 101, 196, 443, 773
HpaII CCGG 1 cut(s) 409
HphI GGTGA 8 cut(s) 133, 191, 506, 557, 701, 920, 1025, 1100
Hpy166II GTNNAC 2 cut(s) 115, 680
Hpy188I TCNGA 3 cut(s) 33, 70, 611
Hpy8I GTNNAC 2 cut(s) 115, 680
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 8 cut(s) 140, 142, 346, 822, 969, 990, 1071, 1146
HpyCH4III ACNGT 3 cut(s) 179, 524, 1160
HpyCH4IV ACGT 3 cut(s) 111, 117, 796
HpyCH4V TGCA 3 cut(s) 432, 450, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 245, 466, 1091
HpyF3I CTNAG 3 cut(s) 339, 992, 1073
HpySE526I ACGT 3 cut(s) 111, 117, 796
Hsp92II CATG 5 cut(s) 335, 728, 956, 1085, 1127
HspAI GCGC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 328
LmnI GCTCC 4 cut(s) 264, 296, 394, 661
Lsp1109I GCAGC 2 cut(s) 391, 463
LweI GCATC 1 cut(s) 1081
MaeI CTAG 5 cut(s) 17, 558, 711, 942, 1113
MaeII ACGT 3 cut(s) 111, 117, 796
MaeIII GTNAC 3 cut(s) 334, 518, 635
MbiI CCGCTC 1 cut(s) 397
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 6 cut(s) 269, 301, 536, 783, 898, 1026
MluCI AATT 8 cut(s) 40, 56, 286, 303, 318, 784, 937, 1016
MlyI GAGTC 1 cut(s) 95
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 3 cut(s) 837, 1005, 1086
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 410, 585
Mva1269I GAATGC 2 cut(s) 27, 434
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 167, 245, 466, 1091
NciI CCSGG 1 cut(s) 410
NlaIII CATG 5 cut(s) 335, 728, 956, 1085, 1127
NlaIV GGNNCC 3 cut(s) 534, 780, 781
NmuCI GTSAC 3 cut(s) 334, 518, 635
NruI TCGCGA 1 cut(s) 207
NspI RCATGY 1 cut(s) 1085
NspV TTCGAA 1 cut(s) 630
PaeI GCATGC 1 cut(s) 1085
PagI TCATGA 3 cut(s) 724, 952, 1123
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 141, 183
PctI GAATGC 2 cut(s) 27, 434
PfeI GAWTC 4 cut(s) 4, 196, 443, 773
Pfl23II CGTACG 1 cut(s) 249
PkrI GCNGC 3 cut(s) 125, 381, 478
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 301
Psp1406I AACGTT 1 cut(s) 796
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 534, 780, 781
PspOMI GGGCCC 2 cut(s) 532, 779
PspPI GGNCC 6 cut(s) 256, 532, 533, 587, 779, 780
PsuI RGATCY 1 cut(s) 554
RruI TCGCGA 1 cut(s) 207
RsaI GTAC 3 cut(s) 95, 251, 344
RsaNI GTAC 3 cut(s) 94, 250, 343
RseI CAYNNNNRTG 3 cut(s) 837, 1005, 1086
SacI GAGCTC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 3 cut(s) 124, 380, 477
Sau96I GGNCC 6 cut(s) 256, 532, 533, 587, 779, 780
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 410, 585
SduI GDGCHC 6 cut(s) 269, 301, 536, 783, 898, 1026
SetI ASST 9 cut(s) 114, 120, 301, 478, 490, 563, 799, 905, 936
SfaNI GCATC 1 cut(s) 1081
SfuI TTCGAA 1 cut(s) 630
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 3 cut(s) 837, 1005, 1086
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
SphI GCATGC 1 cut(s) 1085
Sse9I AATT 8 cut(s) 40, 56, 286, 303, 318, 784, 937, 1016
SsiI CCGC 7 cut(s) 8, 105, 123, 313, 382, 397, 569
SspMI CTAG 5 cut(s) 17, 558, 711, 942, 1113
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 2 cut(s) 408, 583
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 3 cut(s) 179, 524, 1160
TaiI ACGT 3 cut(s) 114, 120, 799
TaqI TCGA 3 cut(s) 135, 630, 824
TasI AATT 8 cut(s) 40, 56, 286, 303, 318, 784, 937, 1016
TatI WGTACW 2 cut(s) 93, 342
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 4 cut(s) 4, 196, 443, 773
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 1 cut(s) 1165
TseFI GTSAC 3 cut(s) 334, 518, 635
TseI GCWGC 2 cut(s) 379, 476
Tsp45I GTSAC 3 cut(s) 334, 518, 635
TspDTI ATGAA 7 cut(s) 17, 381, 553, 711, 786, 1152, 1182
TspGWI ACGGA 2 cut(s) 309, 772
TspRI CASTG 1 cut(s) 1165
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 3 cut(s) 303, 937, 1016
XbaI TCTAGA 2 cut(s) 941, 1112
XceI RCATGY 1 cut(s) 1085
XmiI GTMKAC 2 cut(s) 114, 679
XspI CTAG 5 cut(s) 17, 558, 711, 942, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.