Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008422

Physical Location & Seq

Genomic Coordinates Reverse (-)

75016881 .. 75018964

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAACCCACTAACCCTAGTGAAGCGGATTCAGAACATCAATGCGAGAGAAGCTCAATTAGGGATTTCAGAGGACGCTTCATGGCACGCCAAGTACAAAGACTCCGCTTACGTTTACGCCGGCGGCATTCCCTTTGATCTCACCGAAGGCGATCTCCTCGCCATCTTCGCACAGTACGGAGAGGTCGTCGATGTCAACCTCGTTCGCGATAAAGGGACCGGGAAATCCAAAGGGTTCGCCTTTGTTGCGTATGAGGACCAGAGGAGTACCAATCTCGCTGTGGATAATTTGAACGGAGCCCAAGTGGTGGGTCGAACTATCAGGGTTGATCATGTGGATAAGTACAAGAAGAAAGAAGAGGAAGATGAAGAGGAGGAGCAGAGGAAGAGGGAGGAGCGTGGCGTTTGCCGAGCTTTCCAGAGAGGTGAATGTACTCGTGGAGCTGGATGTAGATTTTCTCACAATGAACAGAGAGCTGCAAACACAGGGTGGGGTGCTGAGGACAAGAAATGGGGACACGAAAACTATGATGGTCCGAGAAAGAGTGACAAAAGACCTGGCACCATCCCCTCAAATCGTGTTCCAGAGCCTAGAGAAGAAAAGAGGACATCAAGAAGACGTGGTGAGAATGATGAGTTGGAGCCAAGATCAAGAGAAGATTATGATAGGAGGGAAGAAAAGAGACCAAGAAGACATGATGATTTTGAATTTCAGCCGAAGGCAAGAGAATATCATGATAGAAGGGAAGATAGGAGACCCAGAAGGCAAGGCGACGATGAATTTGAACCGAAGCTAAAGTCTGTAGAAGATAAGAGACCCAGAAGGCGTGGTGATGATGCTGCATATGAGCCCAAGTCTAGAGAAGATCATGTCAGGAGTGAATATGATAGAAGAGAAGATAGGAGACCAAAAAGACGTGGTGATGATTTGGAAGCTCATGACATGAGGGAAGATCGTGATAGGATGGAAGAAAAGAGATCAAGGCGACCCAATCATGACGAATTAGAGCCACAGCCACGAGCAAGTCGGGGTAAGGAGAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070274 GO:0070727 GO:0071011 GO:0071013 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

348

Amino Acids

41.2

Weight (kDa)

8.26

Isoelectric Point (pI)

67.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	38 - 108	5.4e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008422)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47120 AT3G47120 AT5G58790
fragaria_vesca	FvH4_3g38440
malus_domestica	MD03G1072000.v1.1 MD11G1076000.v1.1
prunus_persica	Prupe.6G058600_v2.0.a1 Prupe.6G058600_v2.0.a1
pyrus_communis	pycom03g05820 pycom11g06370
rosa_chinensis	RchiOBHm_Chr5g0069091
rosa_laevigata	RLG00000036037
rosa_multiflora	Rmu_sc0000853.1_g000035 Rmu_sc0000936.1_g000010
rosa_roxburghii	Rroxscaffold_1G00011660
rosa_rugosa	Rorug05G0396200 Rorug05G0396200
rosa_samantha	Rh5AG453000 Rh5BG472000 Rh5CG494400 Rh5DG484500
rosa_wichuraiana	Rw0G006060 Rw5G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	25, 105, 123
AcsI	RAATTY	2 cut(s)	707, 779
AdeI	CACNNNGTG	1 cut(s)	489
AfaI	GTAC	5 cut(s)	95, 176, 268, 344, 433
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	292, 707, 785
AjiI	CACGTC	2 cut(s)	620, 917
AjnI	CCWGG	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	6 cut(s)	53, 413, 443, 476, 793, 935
AluI	AGCT	6 cut(s)	53, 413, 443, 476, 793, 935
Alw26I	GTCTC	4 cut(s)	676, 748, 808, 898
ApeKI	GCWGC	2 cut(s)	476, 839
ApoI	RAATTY	2 cut(s)	707, 779
ArsI	GACNNNNNNTTYG	4 cut(s)	764, 782, 796, 814
AspS9I	GGNCC	3 cut(s)	216, 256, 533
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	5 cut(s)	133, 437, 635, 842, 932
AvaII	GGWCC	3 cut(s)	216, 256, 533
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	2 cut(s)	301, 852
BauI	CACGAG	2 cut(s)	435, 1017
BbsI	GAAGAC	2 cut(s)	622, 697
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	463, 826
BccI	CCATC	4 cut(s)	170, 524, 572, 958
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	4 cut(s)	676, 748, 808, 898
BfaI	CTAG	3 cut(s)	17, 591, 858
BfmI	CTRYAG	1 cut(s)	801
BisI	GCNGC	3 cut(s)	124, 477, 840
BlsI	GCNGC	3 cut(s)	125, 478, 841
Bme1390I	CCNGG	2 cut(s)	220, 558
Bme18I	GGWCC	3 cut(s)	216, 256, 533
BmgBI	CACGTC	2 cut(s)	620, 917
BmgT120I	GGNCC	3 cut(s)	216, 256, 533
BmiI	GGNNCC	4 cut(s)	217, 298, 562, 642
BmrFI	CCNGG	2 cut(s)	220, 558
BmsI	GCATC	1 cut(s)	826
BpiI	GAAGAC	2 cut(s)	622, 697
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
Bpu10I	CCTNAGC	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	220
BsaI	GGTCTC	4 cut(s)	676, 748, 808, 898
BsaXI	ACNNNNNCTCC	6 cut(s)	86, 116, 171, 201, 288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	558
BseGI	GGATG	3 cut(s)	452, 564, 969
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	489
BseRI	GAGGAG	5 cut(s)	146, 277, 386, 389, 407
BseXI	GCAGC	2 cut(s)	463, 826
Bsh1236I	CGCG	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	560
BsiSI	CCGG	2 cut(s)	120, 219
BslFI	GGGAC	2 cut(s)	229, 528
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	4 cut(s)	676, 748, 808, 898
BsmFI	GGGAC	2 cut(s)	229, 528
BsmI	GAATGC	1 cut(s)	126
Bso31I	GGTCTC	4 cut(s)	676, 748, 808, 898
Bsp1286I	GDGCHC	2 cut(s)	301, 852
Bsp143I	GATC	7 cut(s)	136, 151, 328, 647, 865, 952, 977
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	3 cut(s)	25, 105, 123
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	3 cut(s)	733, 937, 994
BspLI	GGNNCC	4 cut(s)	217, 298, 562, 642
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	4 cut(s)	676, 748, 808, 898
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	7 cut(s)	136, 151, 328, 647, 865, 952, 977
BssSI	CACGAG	2 cut(s)	435, 1017
Bst2BI	CACGAG	2 cut(s)	435, 1017
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	4 cut(s)	351, 363, 380, 886
BstC8I	GCNNGC	2 cut(s)	87, 121
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	3 cut(s)	452, 564, 969
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	7 cut(s)	139, 154, 331, 650, 868, 955, 980
BstMAI	GTCTC	4 cut(s)	676, 748, 808, 898
BstMBI	GATC	7 cut(s)	136, 151, 328, 647, 865, 952, 977
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 167, 245
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	2 cut(s)	218, 556
BstSFI	CTRYAG	1 cut(s)	801
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	463, 826
BstV2I	GAAGAC	2 cut(s)	622, 697
BtrI	CACGTC	2 cut(s)	620, 917
BtsCI	GGATG	3 cut(s)	452, 564, 969
BtuMI	TCGCGA	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	87, 121
CciI	TCATGA	3 cut(s)	733, 937, 994
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	216, 256, 533
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	5 cut(s)	94, 175, 267, 343, 432
CviAII	CATG	8 cut(s)	81, 332, 695, 734, 869, 938, 943, 995
CviQI	GTAC	5 cut(s)	94, 175, 267, 343, 432
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	7 cut(s)	138, 153, 330, 649, 867, 954, 979
DpnII	GATC	7 cut(s)	136, 151, 328, 647, 865, 952, 977
DraIII	CACNNNGTG	1 cut(s)	489
Eam1104I	CTCTTC	4 cut(s)	351, 363, 380, 886
EarI	CTCTTC	4 cut(s)	351, 363, 380, 886
Eco24I	GRGCYC	2 cut(s)	301, 852
Eco31I	GGTCTC	4 cut(s)	676, 748, 808, 898
Eco47I	GGWCC	3 cut(s)	216, 256, 533
EcoRII	CCWGG	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	301, 852
FaeI	CATG	8 cut(s)	84, 335, 698, 737, 872, 941, 946, 998
FaqI	GGGAC	2 cut(s)	229, 528
FatI	CATG	8 cut(s)	80, 331, 694, 733, 868, 937, 942, 994
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	124, 477, 840
FokI	GGATG	3 cut(s)	459, 551, 976
FriOI	GRGCYC	2 cut(s)	301, 852
Fsp4HI	GCNGC	3 cut(s)	124, 477, 840
FspBI	CTAG	3 cut(s)	17, 591, 858
GluI	GCNGC	3 cut(s)	124, 477, 840
HapII	CCGG	2 cut(s)	120, 219
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	8 cut(s)	84, 335, 698, 737, 872, 941, 946, 998
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	28, 101
HpaII	CCGG	2 cut(s)	120, 219
HphI	GGTGA	5 cut(s)	133, 437, 635, 842, 932
Hpy166II	GTNNAC	2 cut(s)	115, 196
Hpy188I	TCNGA	3 cut(s)	33, 70, 537
Hpy8I	GTNNAC	2 cut(s)	115, 196
Hpy99I	CGWCG	2 cut(s)	191, 776
HpyAV	CCTTC	5 cut(s)	140, 712, 735, 756, 816
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	3 cut(s)	111, 619, 916
HpyCH4V	TGCA	2 cut(s)	479, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 167, 245
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	3 cut(s)	111, 619, 916
Hsp92II	CATG	8 cut(s)	84, 335, 698, 737, 872, 941, 946, 998
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	7 cut(s)	136, 151, 328, 647, 865, 952, 977
LmnI	GCTCC	5 cut(s)	296, 376, 394, 440, 640
Lsp1109I	GCAGC	2 cut(s)	463, 826
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	3 cut(s)	17, 591, 858
MaeII	ACGT	3 cut(s)	111, 619, 916
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	7 cut(s)	138, 153, 330, 649, 867, 954, 979
MboI	GATC	7 cut(s)	136, 151, 328, 647, 865, 952, 977
MhlI	GDGCHC	2 cut(s)	301, 852
MluCI	AATT	5 cut(s)	56, 286, 707, 779, 1001
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	618
MreI	CGCCGGCG	1 cut(s)	119
MroNI	GCCGGC	1 cut(s)	119
MspI	CCGG	2 cut(s)	120, 219
MspR9I	CCNGG	2 cut(s)	220, 558
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	50, 167, 245
NaeI	GCCGGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	7 cut(s)	136, 151, 328, 647, 865, 952, 977
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	8 cut(s)	84, 335, 698, 737, 872, 941, 946, 998
NlaIV	GGNNCC	4 cut(s)	217, 298, 562, 642
NmeAIII	GCCGAG	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	545
NruI	TCGCGA	1 cut(s)	207
PagI	TCATGA	3 cut(s)	733, 937, 994
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	125, 478, 841
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	4 cut(s)	217, 298, 562, 642
PspPI	GGNCC	3 cut(s)	216, 256, 533
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	5 cut(s)	95, 176, 268, 344, 433
RsaNI	GTAC	5 cut(s)	94, 175, 267, 343, 432
SatI	GCNGC	3 cut(s)	124, 477, 840
Sau3AI	GATC	7 cut(s)	136, 151, 328, 647, 865, 952, 977
Sau96I	GGNCC	3 cut(s)	216, 256, 533
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	220, 558
SduI	GDGCHC	2 cut(s)	301, 852
SfaNI	GCATC	1 cut(s)	826
SfcI	CTRYAG	1 cut(s)	801
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	3 cut(s)	216, 256, 533
Sse9I	AATT	5 cut(s)	56, 286, 707, 779, 1001
SsiI	CCGC	3 cut(s)	25, 105, 123
SspMI	CTAG	3 cut(s)	17, 591, 858
StyD4I	CCNGG	2 cut(s)	218, 556
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	3 cut(s)	114, 622, 919
TaqI	TCGA	2 cut(s)	189, 313
TasI	AATT	5 cut(s)	56, 286, 707, 779, 1001
TatI	WGTACW	3 cut(s)	93, 342, 431
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	476, 839
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	5 cut(s)	17, 69, 381, 480, 792
TspGWI	ACGGA	2 cut(s)	192, 309
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	216, 256, 533
XapI	RAATTY	2 cut(s)	707, 779
XbaI	TCTAGA	1 cut(s)	857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	3 cut(s)	17, 591, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.