FvH4_3g38820

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
33102441 .. 33103159
719 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38820.t1

Sequence Viewer

Length: 321 bp
ATGGAGAAGGCTATTAGCTGGATGCTGGTTTTCCTTGTCATTGCATCCTGTTTGTCCCAATTCCCAGAAGCAAAATCTGTGGAGACTTGCCACAAAAACTCAGACTGCATAAGAACTTCATGCGCCGGAAGCTTTGTTTTGTGTGTCAATGGCATATGCACTTGCGAAGTATCCGGCACTAGCCGAGACGAGTCTGCACCGGTAACTGACGGTGGTGTGGTCCAGCCAACGTGTACCGTCTCTAGTCAGTGCGAAAGCCTCCGCCCATGGTGCGTATCTGGAAAGCCTACTTGTTTTAACGGCAAATGCGTCTGCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.26

Weight (kDa)

5.7

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 262
AfaI GTAC 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 230
AgeI ACCGGT 1 cut(s) 199
AluBI AGCT 2 cut(s) 18, 132
AluI AGCT 2 cut(s) 18, 132
Alw26I GTCTC 3 cut(s) 77, 180, 244
AsiGI ACCGGT 1 cut(s) 199
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 316
BciVI GTATCC 1 cut(s) 181
BcoDI GTCTC 3 cut(s) 77, 180, 244
BfaI CTAG 3 cut(s) 180, 243, 319
BfuI GTATCC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmsI GCATC 2 cut(s) 12, 53
BsaJI CCNNGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 27, 44
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 199
BsiSI CCGG 3 cut(s) 126, 174, 200
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 3 cut(s) 77, 180, 244
BsmBI CGTCTC 2 cut(s) 180, 244
BsmFI GGGAC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 212, 238
BstDEI CTNAG 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 27, 44
BstHHI GCGC 1 cut(s) 125
BstMAI GTCTC 3 cut(s) 77, 180, 244
BstMWI GCNNNNNNNGC 2 cut(s) 129, 270
BsuI GTATCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 266
BtsCI GGATG 2 cut(s) 27, 44
BtsIMutI CAGTG 1 cut(s) 254
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 234
CspAI ACCGGT 1 cut(s) 199
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 2 cut(s) 120, 267
CviJI RGCY 7 cut(s) 11, 18, 132, 183, 226, 258, 286
CviKI_1 RGCY 7 cut(s) 11, 18, 132, 183, 226, 258, 286
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 100
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
Esp3I CGTCTC 2 cut(s) 180, 244
FaeI CATG 2 cut(s) 123, 270
FaiI YATR 5 cut(s) 110, 121, 155, 157, 268
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 119, 266
FauNDI CATATG 1 cut(s) 155
FokI GGATG 2 cut(s) 31, 34
FspBI CTAG 3 cut(s) 180, 243, 319
GlaI GCGC 1 cut(s) 124
HapII CCGG 3 cut(s) 126, 174, 200
HgaI GACGC 1 cut(s) 298
HhaI GCGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 123, 270
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 1 cut(s) 191
HpaII CCGG 3 cut(s) 126, 174, 200
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 234
HpyCH4III ACNGT 2 cut(s) 212, 238
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 4 cut(s) 44, 108, 159, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 270
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 2 cut(s) 123, 270
HspAI GCGC 1 cut(s) 123
LpnPI CCDG 9 cut(s) 4, 11, 61, 78, 139, 187, 213, 236, 264
LweI GCATC 2 cut(s) 12, 53
MaeI CTAG 3 cut(s) 180, 243, 319
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 202
MluCI AATT 1 cut(s) 59
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 1 cut(s) 269
MseI TTAA 1 cut(s) 297
MspI CCGG 3 cut(s) 126, 174, 200
MwoI GCNNNNNNNGC 2 cut(s) 129, 270
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 1 cut(s) 155
NlaIII CATG 2 cut(s) 123, 270
NmeAIII GCCGAG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 199
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 200
SetI ASST 3 cut(s) 20, 134, 233
SfaNI GCATC 2 cut(s) 12, 53
SinI GGWCC 1 cut(s) 220
Sse9I AATT 1 cut(s) 59
SsiI CCGC 1 cut(s) 262
SspMI CTAG 3 cut(s) 180, 243, 319
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 2 cut(s) 212, 238
TaiI ACGT 1 cut(s) 233
TasI AATT 1 cut(s) 59
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 220
XspI CTAG 3 cut(s) 180, 243, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.