Prupe.1G297800_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017634
Physical Location & Seq
Forward (+)
29370937 .. 29372120
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G297800.1

Sequence Viewer

Length: 390 bp
ATGGAGAAGGCTACATCTAAGATAGCTGTCATCAGCTTTGTCGTCTTATTGGTCATTGCATCTTGTGCACCATTATTCTCAAGGGTACCAGCAGGAGCTGAAGCAGCCAAGCCCGTCAAAAGATGTAACAGTAATGACGACTGCAAGTTATTTCCATGCACCTCAAGCTTTGGTCTTTGCGTTAACCAATTGTGCACATGCCAAGTCGCAGATATTAGTATCAATGACTACCCTGCGCCCTGCAGAAGTAGCACTGACTGCAGAGACACTGCAGAAGACTGTCCATGGGGCAAGGCTGTATGTCATAACGGGAAATGCATATGCATACACATGAACCCAGCAACATCATCAGACAAGTCCGGCTCTCGCCTCCAAAATCAAAACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos_2 RVT_1 RVT_3

Protein Analysis

130

Amino Acids

13.78

Weight (kDa)

7.42

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 87
AluBI AGCT 4 cut(s) 26, 36, 98, 168
AluI AGCT 4 cut(s) 26, 36, 98, 168
Alw21I GWGCWC 2 cut(s) 70, 197
Alw26I GTCTC 1 cut(s) 258
Alw44I GTGCAC 2 cut(s) 66, 193
AlwNI CAGNNNCTG 1 cut(s) 98
ApaLI GTGCAC 2 cut(s) 66, 193
ApeKI GCWGC 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 238
BaeGI GKGCMC 2 cut(s) 70, 197
BanI GGYRCC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 70, 197
BbvI GCAGC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 258
BfmI CTRYAG 3 cut(s) 241, 259, 270
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 87
BmsI GCATC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 64, 148
BsaJI CCNNGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 54
BseSI GKGCMC 2 cut(s) 70, 197
BseXI GCAGC 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 70, 197
BsiSI CCGG 1 cut(s) 360
BsmAI GTCTC 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 70, 197
Bsp19I CCATGG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 3 cut(s) 245, 263, 274
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 131, 281
BstAPI GCANNNNNTGC 2 cut(s) 65, 258
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 258
BstMWI GCNNNNNNNGC 5 cut(s) 65, 104, 165, 249, 258
BstNSI RCATGY 1 cut(s) 201
BstSFI CTRYAG 3 cut(s) 241, 259, 270
BstSLI GKGCMC 2 cut(s) 70, 197
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 284
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 252, 267
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 86
CviAII CATG 4 cut(s) 156, 198, 285, 331
CviJI RGCY 9 cut(s) 11, 26, 36, 98, 107, 112, 168, 296, 363
CviKI_1 RGCY 9 cut(s) 11, 26, 36, 98, 107, 112, 168, 296, 363
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 284
EcoT22I ATGCAT 2 cut(s) 320, 326
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 4 cut(s) 159, 201, 288, 334
FaiI YATR 9 cut(s) 157, 199, 286, 301, 306, 320, 322, 326, 332
FatI CATG 4 cut(s) 155, 197, 284, 330
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 341
HapII CCGG 1 cut(s) 360
HhaI GCGC 1 cut(s) 238
Hin1II CATG 4 cut(s) 159, 201, 288, 334
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 166
HpaI GTTAAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 360
Hpy166II GTNNAC 3 cut(s) 68, 184, 195
Hpy188I TCNGA 1 cut(s) 352
Hpy8I GTNNAC 3 cut(s) 68, 184, 195
HpyCH4III ACNGT 2 cut(s) 131, 281
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 104, 165, 249, 258
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 4 cut(s) 159, 201, 288, 334
HspAI GCGC 1 cut(s) 236
KpnI GGTACC 1 cut(s) 89
KspAI GTTAAC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 6 cut(s) 78, 102, 246, 253, 351, 373
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 125
MboII GAAGA 1 cut(s) 287
MfeI CAATTG 1 cut(s) 188
MhlI GDGCHC 2 cut(s) 70, 197
MluCI AATT 1 cut(s) 188
MnlI CCTC 2 cut(s) 172, 380
Mph1103I ATGCAT 2 cut(s) 320, 326
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 329
MspI CCGG 1 cut(s) 360
MunI CAATTG 1 cut(s) 188
MwoI GCNNNNNNNGC 5 cut(s) 65, 104, 165, 249, 258
NcoI CCATGG 1 cut(s) 284
NdeI CATATG 1 cut(s) 320
NlaIII CATG 4 cut(s) 159, 201, 288, 334
NlaIV GGNNCC 1 cut(s) 87
NsiI ATGCAT 2 cut(s) 320, 326
NspI RCATGY 1 cut(s) 201
PkrI GCNGC 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 87
PstI CTGCAG 3 cut(s) 245, 263, 274
PstNI CAGNNNCTG 1 cut(s) 98
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 105
SduI GDGCHC 2 cut(s) 70, 197
SetI ASST 5 cut(s) 28, 38, 100, 164, 170
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 3 cut(s) 241, 259, 270
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 79, 163
SmoI CTYRAG 2 cut(s) 79, 163
Sse9I AATT 1 cut(s) 188
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 131, 281
TasI AATT 1 cut(s) 188
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 259, 274
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 2 cut(s) 259, 274
VneI GTGCAC 2 cut(s) 66, 193
XceI RCATGY 1 cut(s) 201
Zsp2I ATGCAT 2 cut(s) 320, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.