Rroxscaffold_7G00190960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017634
Physical Location & Seq
Reverse (-)
31417080 .. 31417539
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190960.1

Sequence Viewer

Length: 345 bp
ATGGAGAAAGCTACAGTATTTTCGAATACAGCTATCTTTGCCATCTTCTTGGTCGTCATTGCATCGTGTATTATATTCTCATCAGAAGCTAGGTCCATTCCGGAATCATGCTTTACAAGTAGTGACTGCAACAACGATTTATGTATATCCAAACTAGCTGTTTGTATTAAGCACAAGTGCACATGCATGGACGTTTTTCCATCAACGAAATGGAGTAGTACTAATGCTCCTCCTCAGGAGGAATATTTATGTTCCCCTGTAGGGGACTGCTATCTATTTCCTTGTCCCTGGGGATATTGCCCCGTCCAAGTTGGTGCCAAATGCAAATGTGTAAAGCATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.52

Weight (kDa)

6.67

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccIII TCCGGA 1 cut(s) 100
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 261, 262
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 4 cut(s) 11, 32, 89, 158
AluI AGCT 4 cut(s) 11, 32, 89, 158
Alw21I GWGCWC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 93
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 93
AxyI CCTNAGG 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 182
BccI CCATC 2 cut(s) 50, 208
BciT130I CCWGG 1 cut(s) 289
BfaI CTAG 2 cut(s) 90, 155
BfmI CTRYAG 2 cut(s) 12, 258
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 287, 288
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 262
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 57
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 287, 288
BseLI CCNNNNNNNGG 2 cut(s) 261, 262
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 2 cut(s) 219, 222
BseSI GKGCMC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 2 cut(s) 270, 278
BslI CCNNNNNNNGG 2 cut(s) 261, 262
BsmFI GGGAC 2 cut(s) 270, 278
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 316
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 287, 288
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 16
BstBI TTCGAA 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 2 cut(s) 12, 258
BstSLI GKGCMC 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 219
CviAII CATG 3 cut(s) 108, 183, 187
CviJI RGCY 4 cut(s) 11, 32, 89, 158
CviKI_1 RGCY 4 cut(s) 11, 32, 89, 158
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 188
FaeI CATG 3 cut(s) 111, 186, 190
FaiI YATR 8 cut(s) 74, 109, 142, 146, 184, 188, 250, 339
FaqI GGGAC 2 cut(s) 270, 278
FatI CATG 3 cut(s) 107, 182, 186
FspBI CTAG 2 cut(s) 90, 155
HapII CCGG 1 cut(s) 101
Hin1II CATG 3 cut(s) 111, 186, 190
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 101, 236
Hpy8I GTNNAC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 5 cut(s) 62, 129, 180, 186, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 3 cut(s) 111, 186, 190
Kpn2I TCCGGA 1 cut(s) 100
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 5 cut(s) 114, 221, 270, 274, 301
LweI GCATC 1 cut(s) 71
MaeI CTAG 2 cut(s) 90, 155
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 122
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 1 cut(s) 340
MnlI CCTC 3 cut(s) 232, 240, 243
Mph1103I ATGCAT 1 cut(s) 188
MroI TCCGGA 1 cut(s) 100
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 38
NlaIII CATG 3 cut(s) 111, 186, 190
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 188
NspI RCATGY 1 cut(s) 186
NspV TTCGAA 1 cut(s) 23
PasI CCCWGGG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 93
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 93
ScaI AGTACT 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 182
SetI ASST 6 cut(s) 13, 34, 91, 95, 160, 195
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 2 cut(s) 12, 258
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 1 cut(s) 340
SspI AATATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 90, 155
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 23
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 93
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XspI CTAG 2 cut(s) 90, 155
ZrmI AGTACT 1 cut(s) 220
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.